Nucleotide Global Alignment

Description

Query:
TRCN0000469018
Subject:
XR_001780819.1
Aligned Length:
2767
Identities:
1295
Gaps:
1322

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TAGCCTCACACCCACGGAAGTGGCTTTAGAGAACGCCTTGCGGCTCCTCCTCTCTGCGTGGCGTGGGGTCGCTG  74

Query    1  -------------------------------ATGGGTGTGATAGGTATAC------AGCTGGTTG---TTACCA  34
                                           |||.|   |..|||..|.|      |||.||..|   ||.||.
Sbjct   75  GCGGTCCGGAGAGGGAGGAACTTCCTGTCCCATGCG---GGCAGGACTTCCGGCCGAGCCGGAAGACCTTTCCC  145

Query   35  T----GGT---GATGGC-CAGTGTCATGCAGA-----------AGATTAT--AC-----------CTC---ACT  73
            |    |||   ||..|| |.||.|  ||||||           |||||.|  ||           |||   |||
Sbjct  146  TTCGCGGTTTCGAGAGCTCCGTTT--TGCAGAACCTGAAGGGGAGATTCTGGACGGTCCCGGGGACTCTAGACT  217

Query   74  ATTCTCTTGCTCGA--------TGGCTACTCTGTAATGGCAGTTTGAGGTGGTATCAACATCCTACAGAAGAAG  139
             .|||.|..|.|||        ||||      ||.||    |||||||.|||||||||||||||.|.|||||||
Sbjct  218  -GTCTGTCCCACGACCTGTTCTTGGC------GTTAT----GTTTGAGATGGTATCAACATCCTTCCGAAGAAG  280

Query  140  AATTAAGAATTCTTGCAGGGAAACAACAAAAAGGGAAAACCAAAAAAGATAGGAAATATAATGGTCACATTGAA  213
            ||||||||||.|||||||||||.||.||.|||||.||||..||||||||.||.|||||.|||||.||.||||||
Sbjct  281  AATTAAGAATCCTTGCAGGGAAGCAGCAGAAAGGAAAAAGTAAAAAAGACAGAAAATACAATGGCCATATTGAA  354

Query  214  AGTAAGCCATTAACCATTCCAAAGGATATTGACCTTCATCTAGAAACAAAGTCAGTTACAGAAGTGGATACTTT  287
            |.|||||||.|||||||||||||.||.||||||||||||||||||||.|||||.||||||||||||||.|||||
Sbjct  355  AATAAGCCACTAACCATTCCAAAAGACATTGACCTTCATCTAGAAACCAAGTCTGTTACAGAAGTGGACACTTT  428

Query  288  AGCATTGCATTACTTTCCAGAATACCAGTGGCTGGTGGATTTCACAGTGGCTGCTACAGTTGTGTATCTAGTAA  361
            ||||.||||||||||.|||||||||||||||||||||||.|||||.|||||||||||..||||.|||.||||||
Sbjct  429  AGCACTGCATTACTTCCCAGAATACCAGTGGCTGGTGGACTTCACGGTGGCTGCTACCATTGTCTATTTAGTAA  502

Query  362  CTGAAGTCTACTACAATTTTATGAAGCCTACACAGGAAATGAATATCAGCTTAGTCTGGTGCCTACTTGTTTTG  435
            ||||.|||||.||||..||.|||||||||||||||||||||||||||||||||||.||||||||.||.||||||
Sbjct  503  CTGAGGTCTATTACAGCTTCATGAAGCCTACACAGGAAATGAATATCAGCTTAGTTTGGTGCCTCCTGGTTTTG  576

Query  436  TCTTTTGCAATCAAAGTTCTATTTTCATTAACTACACACTATTTTAAAGTAGAAGATGGTGGTGAAAGATCTGT  509
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||.||
Sbjct  577  TCTTTTGCAATCAAAGTTCTATTTTCATTAACTACACACTATTTTAAAGTAGAAGATGGAGGTGAAAGGTCAGT  650

Query  510  TTGTGTCACCTTTGGATTTTTTTTCTTTGTCAAAGCAATGGCAGTGTTGATTGTAACAGAAAATTATCTGGAAT  583
            |||||||||||||||||||||||||||.||.||||||||||||||.|||||.||||||||.||.||.|||||.|
Sbjct  651  TTGTGTCACCTTTGGATTTTTTTTCTTCGTTAAAGCAATGGCAGTTTTGATCGTAACAGAGAACTACCTGGAGT  724

Query  584  TTGGACTTGAAACAGGGTTTACAAATTTTTCAGACAGTGCGATGCAGTTTCTTGAAAAGCAAGGTTTAGAATCT  657
            ||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||
Sbjct  725  TTGGCCTTGAAACAGGGTTTACAAATTTTTCAGACAGTGCAATGCAGTTTCTTGAAAAGCAGGGTTTAGAATCT  798

Query  658  CAGAGTCCTGTTTCAAAACTTACTTTCAAATTTTTCCTGGCTATTTTCTGTTCATTCATTGGGGCTTTTTTGAC  731
            |||.|.||||||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||
Sbjct  799  CAGGGCCCTGTTTCAAAACTTACTTTCAAATTTTTCCTGGCTGTTTTCTGTTCACTCATTGGGGCTTTTTTGAC  872

Query  732  ATTTCCTGGATTACGACTGGCTCAAATGCATCTGGATGCCCTGAATTTGGCAACAGAAAAAATTACACA-----  800
            |||||||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||||||||     
Sbjct  873  ATTTCCTGGATTACGGCTGGCTCAAATGCATCTGGATGCCCTGAATATGGCAACAGAAAAAATTACACAGTAAG  946

Query  801  -------------------------------------------------------AACTTTACTTCATATCAAC  819
                                                                   |||.|||||||||||||||
Sbjct  947  CGGAAAATGTACATAAGCACATGCAGATAAATATATGTTTTCCATCTTAATTAAGAACATTACTTCATATCAAC  1020

Query  820  TTCTTGGCACCTTTATTTATGGTTTTGCTCTGGGTAAAACCAATCACCAAAGACTACATTATGAACCCACCACT  893
            ||||||||||||||||||||||||.||||||||||.||||||||||||||||||||.||.|||||||||||..|
Sbjct 1021  TTCTTGGCACCTTTATTTATGGTTCTGCTCTGGGTGAAACCAATCACCAAAGACTATATCATGAACCCACCGTT  1094

Query  894  GGGCAAAGAAAGTATCCCTTTAATGACAGAAGCCACATTCGATACTCTGCGACTCTGGTTAATAATCCTGCTGT  967
            |||.|.|||.|||.|||||.|||||||||||||||||||.||||||||.|||||||||||||||||||||||.|
Sbjct 1095  GGGTAGAGAGAGTGTCCCTCTAATGACAGAAGCCACATTTGATACTCTTCGACTCTGGTTAATAATCCTGCTCT  1168

Query  968  GTGCTTTGCGGTTGGCCATGATGCGTAGTCACCTGCAAGCTTATTTAAATTTAGCCCAAAAATGTGTGGATCAG  1041
            |||.|||||||||||||||||||||.||||||||||||||.|||||||||||.|||||.||||||||||||||.
Sbjct 1169  GTGTTTTGCGGTTGGCCATGATGCGAAGTCACCTGCAAGCATATTTAAATTTGGCCCAGAAATGTGTGGATCAA  1242

Query 1042  ATGAAGAAAGAAGCGGGGCGAATAAGCACGGTTGAGCTACAGAAAATGGTGGCTCGAGTCTTTTATTATCTTTG  1115
            ||||||||||||||.||.||||||||.||.|||||||||||||||||||||||.|||||||||||.||.||.||
Sbjct 1243  ATGAAGAAAGAAGCTGGCCGAATAAGTACAGTTGAGCTACAGAAAATGGTGGCGCGAGTCTTTTACTACCTGTG  1316

Query 1116  TGTCATTGCACTGCAGTATGTGGCGCCTCTGGTAATGCTGCTTCACACAACTCTGCTTTTGAAAACACTAGGTA  1189
            |||||||||.||||||||||||||.||||||||||||||||||||.|..|||||||||.|||||||||||||||
Sbjct 1317  TGTCATTGCCCTGCAGTATGTGGCACCTCTGGTAATGCTGCTTCATATGACTCTGCTTCTGAAAACACTAGGTA  1390

Query 1190  ATCATTCCTGGGGTATTTATCCAGAATCTATCTCTACCTTACCAGTGGATAATAGTCTACTGTCCAATTCTGTT  1263
            |||||||||||||.||||||||||||.|...||.|.||||.|||||||||||||.|||.|...||||.||.|.|
Sbjct 1391  ATCATTCCTGGGGAATTTATCCAGAAGCCGCCTTTCCCTTGCCAGTGGATAATAATCTCCCCGCCAACTCGGCT  1464

Query 1264  TACTCTGAATTACCATCAGCTGAAGGGAAAATGAAGGTAACTGTTACACAAATAACAGTGGCACTGAGCAGCTT  1337
            |||.|||||.||||||||.||||.|||||.|||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 1465  TACCCTGAACTACCATCACCTGATGGGAAGATGAAGGTAACTGTTACACAAATCACAGTGGCCCTGAGCAGCTT  1538

Query 1338  AAAAAATATTTTTACTCCTCTTCTTTTTCGAGGACTTCTGTCTTTTCTGACCTGGTGGATTGCTGCTTGCCTCT  1411
            ||||||.||.||.||.|||||.||||||||||||||||||||.|||.||||.|||||||||||.||||||||||
Sbjct 1539  AAAAAACATCTTCACGCCTCTCCTTTTTCGAGGACTTCTGTCATTTTTGACATGGTGGATTGCAGCTTGCCTCT  1612

Query 1412  TTTCTACAAGCCTTTTTGGGCTTTTCTATCACCAGTATCTGACTGTGGCA------------------------  1461
            |||||||||||||||||||||||||||||||.||||||.||||.||||||                        
Sbjct 1613  TTTCTACAAGCCTTTTTGGGCTTTTCTATCATCAGTATTTGACAGTGGCATGAATTTCAGTCAAAAACGGATAT  1686

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 1687  CCAAGTCACACTTTAAATTCAAATATCTGTGCCCTTGAAGGATTGACAAAAGAAGAATGCAAATAGAACGGAGA  1760

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 1761  AAAAAATTATTGGAGTGTTTTGTTTTGAATGCTTCCTCTGTACTCTCAGGGTGAATTAATGTTGTAATATTTAA  1834

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 1835  AACTCATGAGATAGGTTGTTACACTGTTACACACTGTGGCATTGGAATTGTAACTCATTGAGAGAACTAATGTG  1908

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 1909  AGAGGGCTCTCTGCAGGGGTAATCCTTCTGATTATCTTGGTTTACAGTTGCAAACCTCCAACAGTCTGTTAGAC  1982

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 1983  TTCTTCTAGGACTCCAGTTACTGACTGCTTTTCATGGTGTTGTGGTACTGTTACTACTCATAGTTGCTGCCTAC  2056

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 2057  AGAACAATCTTCAAACTGAGCCATGCTCGAGGGAAGGGAAAGGAACGAAAATTACTTCTGTTGGTAATGTATTA  2130

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 2131  GTCTTAAAAAAAAATCCAACAGAAAGGAAGAGAAAGCTACTGTATATTACAGTAAGAAAAGCTGCATAGTCATT  2204

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 2205  TTAAATTGAATGGAGATATAAATTACCTATTGTCTACAAGTACTGTTACTTGAGAGTAGCAGGAATATTCTTTT  2278

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 2279  AAAGTGAATGCCACCCAGCTTGAAAGTTCTTTTTAAATGATTGGCCATATGAACATCAGCGGTCTCACTGTTAG  2352

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 2353  TTTTGGGCCTTGCTGTATTTTATTTTTTCTTTGATTTTAAATAGTTATGTTTAATCTAAAAATATTTATCAATA  2426

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 2427  CTGATCAAATTTGAGAATTACTTTGCAATCCTGCTGACTACGTGTATGTATTGTGTATATATTATATATTAAAT  2500

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 2501  ATATAATATATTGAGGTTATAAAAGATGAAAATATTGAATCCTTATAATATTTTAAGTTTCAGAACGTACGTTA  2574

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 2575  AACAATGATTTGAATGAGATGTATTTGTATCTGGAAATTTCTGTTTGGAATGAGATTAAAATACATTTTTTTAA  2648

Query 1462  --------------------------------------------------------------------------  1461
                                                                                      
Sbjct 2649  AGCTCAACAGAGTGTAATTTATTTGTTGTACATATATGATAATAGTACTTAAAATGTCATGAAGATTAGTTGAT  2722

Query 1462  -----------------------------  1461
                                         
Sbjct 2723  TTCTCACAAATTAAATTTCATTTTCTGTT  2751

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