Nucleotide Global Alignment
Description
- Query:
- TRCN0000469018
- Subject:
- XR_001780819.1
- Aligned Length:
- 2767
- Identities:
- 1295
- Gaps:
- 1322
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TAGCCTCACACCCACGGAAGTGGCTTTAGAGAACGCCTTGCGGCTCCTCCTCTCTGCGTGGCGTGGGGTCGCTG 74
Query 1 -------------------------------ATGGGTGTGATAGGTATAC------AGCTGGTTG---TTACCA 34
|||.| |..|||..|.| |||.||..| ||.||.
Sbjct 75 GCGGTCCGGAGAGGGAGGAACTTCCTGTCCCATGCG---GGCAGGACTTCCGGCCGAGCCGGAAGACCTTTCCC 145
Query 35 T----GGT---GATGGC-CAGTGTCATGCAGA-----------AGATTAT--AC-----------CTC---ACT 73
| ||| ||..|| |.||.| |||||| |||||.| || ||| |||
Sbjct 146 TTCGCGGTTTCGAGAGCTCCGTTT--TGCAGAACCTGAAGGGGAGATTCTGGACGGTCCCGGGGACTCTAGACT 217
Query 74 ATTCTCTTGCTCGA--------TGGCTACTCTGTAATGGCAGTTTGAGGTGGTATCAACATCCTACAGAAGAAG 139
.|||.|..|.||| |||| ||.|| |||||||.|||||||||||||||.|.|||||||
Sbjct 218 -GTCTGTCCCACGACCTGTTCTTGGC------GTTAT----GTTTGAGATGGTATCAACATCCTTCCGAAGAAG 280
Query 140 AATTAAGAATTCTTGCAGGGAAACAACAAAAAGGGAAAACCAAAAAAGATAGGAAATATAATGGTCACATTGAA 213
||||||||||.|||||||||||.||.||.|||||.||||..||||||||.||.|||||.|||||.||.||||||
Sbjct 281 AATTAAGAATCCTTGCAGGGAAGCAGCAGAAAGGAAAAAGTAAAAAAGACAGAAAATACAATGGCCATATTGAA 354
Query 214 AGTAAGCCATTAACCATTCCAAAGGATATTGACCTTCATCTAGAAACAAAGTCAGTTACAGAAGTGGATACTTT 287
|.|||||||.|||||||||||||.||.||||||||||||||||||||.|||||.||||||||||||||.|||||
Sbjct 355 AATAAGCCACTAACCATTCCAAAAGACATTGACCTTCATCTAGAAACCAAGTCTGTTACAGAAGTGGACACTTT 428
Query 288 AGCATTGCATTACTTTCCAGAATACCAGTGGCTGGTGGATTTCACAGTGGCTGCTACAGTTGTGTATCTAGTAA 361
||||.||||||||||.|||||||||||||||||||||||.|||||.|||||||||||..||||.|||.||||||
Sbjct 429 AGCACTGCATTACTTCCCAGAATACCAGTGGCTGGTGGACTTCACGGTGGCTGCTACCATTGTCTATTTAGTAA 502
Query 362 CTGAAGTCTACTACAATTTTATGAAGCCTACACAGGAAATGAATATCAGCTTAGTCTGGTGCCTACTTGTTTTG 435
||||.|||||.||||..||.|||||||||||||||||||||||||||||||||||.||||||||.||.||||||
Sbjct 503 CTGAGGTCTATTACAGCTTCATGAAGCCTACACAGGAAATGAATATCAGCTTAGTTTGGTGCCTCCTGGTTTTG 576
Query 436 TCTTTTGCAATCAAAGTTCTATTTTCATTAACTACACACTATTTTAAAGTAGAAGATGGTGGTGAAAGATCTGT 509
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||.||
Sbjct 577 TCTTTTGCAATCAAAGTTCTATTTTCATTAACTACACACTATTTTAAAGTAGAAGATGGAGGTGAAAGGTCAGT 650
Query 510 TTGTGTCACCTTTGGATTTTTTTTCTTTGTCAAAGCAATGGCAGTGTTGATTGTAACAGAAAATTATCTGGAAT 583
|||||||||||||||||||||||||||.||.||||||||||||||.|||||.||||||||.||.||.|||||.|
Sbjct 651 TTGTGTCACCTTTGGATTTTTTTTCTTCGTTAAAGCAATGGCAGTTTTGATCGTAACAGAGAACTACCTGGAGT 724
Query 584 TTGGACTTGAAACAGGGTTTACAAATTTTTCAGACAGTGCGATGCAGTTTCTTGAAAAGCAAGGTTTAGAATCT 657
||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||||||.||||||||||||
Sbjct 725 TTGGCCTTGAAACAGGGTTTACAAATTTTTCAGACAGTGCAATGCAGTTTCTTGAAAAGCAGGGTTTAGAATCT 798
Query 658 CAGAGTCCTGTTTCAAAACTTACTTTCAAATTTTTCCTGGCTATTTTCTGTTCATTCATTGGGGCTTTTTTGAC 731
|||.|.||||||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||||||||||
Sbjct 799 CAGGGCCCTGTTTCAAAACTTACTTTCAAATTTTTCCTGGCTGTTTTCTGTTCACTCATTGGGGCTTTTTTGAC 872
Query 732 ATTTCCTGGATTACGACTGGCTCAAATGCATCTGGATGCCCTGAATTTGGCAACAGAAAAAATTACACA----- 800
|||||||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 873 ATTTCCTGGATTACGGCTGGCTCAAATGCATCTGGATGCCCTGAATATGGCAACAGAAAAAATTACACAGTAAG 946
Query 801 -------------------------------------------------------AACTTTACTTCATATCAAC 819
|||.|||||||||||||||
Sbjct 947 CGGAAAATGTACATAAGCACATGCAGATAAATATATGTTTTCCATCTTAATTAAGAACATTACTTCATATCAAC 1020
Query 820 TTCTTGGCACCTTTATTTATGGTTTTGCTCTGGGTAAAACCAATCACCAAAGACTACATTATGAACCCACCACT 893
||||||||||||||||||||||||.||||||||||.||||||||||||||||||||.||.|||||||||||..|
Sbjct 1021 TTCTTGGCACCTTTATTTATGGTTCTGCTCTGGGTGAAACCAATCACCAAAGACTATATCATGAACCCACCGTT 1094
Query 894 GGGCAAAGAAAGTATCCCTTTAATGACAGAAGCCACATTCGATACTCTGCGACTCTGGTTAATAATCCTGCTGT 967
|||.|.|||.|||.|||||.|||||||||||||||||||.||||||||.|||||||||||||||||||||||.|
Sbjct 1095 GGGTAGAGAGAGTGTCCCTCTAATGACAGAAGCCACATTTGATACTCTTCGACTCTGGTTAATAATCCTGCTCT 1168
Query 968 GTGCTTTGCGGTTGGCCATGATGCGTAGTCACCTGCAAGCTTATTTAAATTTAGCCCAAAAATGTGTGGATCAG 1041
|||.|||||||||||||||||||||.||||||||||||||.|||||||||||.|||||.||||||||||||||.
Sbjct 1169 GTGTTTTGCGGTTGGCCATGATGCGAAGTCACCTGCAAGCATATTTAAATTTGGCCCAGAAATGTGTGGATCAA 1242
Query 1042 ATGAAGAAAGAAGCGGGGCGAATAAGCACGGTTGAGCTACAGAAAATGGTGGCTCGAGTCTTTTATTATCTTTG 1115
||||||||||||||.||.||||||||.||.|||||||||||||||||||||||.|||||||||||.||.||.||
Sbjct 1243 ATGAAGAAAGAAGCTGGCCGAATAAGTACAGTTGAGCTACAGAAAATGGTGGCGCGAGTCTTTTACTACCTGTG 1316
Query 1116 TGTCATTGCACTGCAGTATGTGGCGCCTCTGGTAATGCTGCTTCACACAACTCTGCTTTTGAAAACACTAGGTA 1189
|||||||||.||||||||||||||.||||||||||||||||||||.|..|||||||||.|||||||||||||||
Sbjct 1317 TGTCATTGCCCTGCAGTATGTGGCACCTCTGGTAATGCTGCTTCATATGACTCTGCTTCTGAAAACACTAGGTA 1390
Query 1190 ATCATTCCTGGGGTATTTATCCAGAATCTATCTCTACCTTACCAGTGGATAATAGTCTACTGTCCAATTCTGTT 1263
|||||||||||||.||||||||||||.|...||.|.||||.|||||||||||||.|||.|...||||.||.|.|
Sbjct 1391 ATCATTCCTGGGGAATTTATCCAGAAGCCGCCTTTCCCTTGCCAGTGGATAATAATCTCCCCGCCAACTCGGCT 1464
Query 1264 TACTCTGAATTACCATCAGCTGAAGGGAAAATGAAGGTAACTGTTACACAAATAACAGTGGCACTGAGCAGCTT 1337
|||.|||||.||||||||.||||.|||||.|||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 1465 TACCCTGAACTACCATCACCTGATGGGAAGATGAAGGTAACTGTTACACAAATCACAGTGGCCCTGAGCAGCTT 1538
Query 1338 AAAAAATATTTTTACTCCTCTTCTTTTTCGAGGACTTCTGTCTTTTCTGACCTGGTGGATTGCTGCTTGCCTCT 1411
||||||.||.||.||.|||||.||||||||||||||||||||.|||.||||.|||||||||||.||||||||||
Sbjct 1539 AAAAAACATCTTCACGCCTCTCCTTTTTCGAGGACTTCTGTCATTTTTGACATGGTGGATTGCAGCTTGCCTCT 1612
Query 1412 TTTCTACAAGCCTTTTTGGGCTTTTCTATCACCAGTATCTGACTGTGGCA------------------------ 1461
|||||||||||||||||||||||||||||||.||||||.||||.||||||
Sbjct 1613 TTTCTACAAGCCTTTTTGGGCTTTTCTATCATCAGTATTTGACAGTGGCATGAATTTCAGTCAAAAACGGATAT 1686
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1687 CCAAGTCACACTTTAAATTCAAATATCTGTGCCCTTGAAGGATTGACAAAAGAAGAATGCAAATAGAACGGAGA 1760
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1761 AAAAAATTATTGGAGTGTTTTGTTTTGAATGCTTCCTCTGTACTCTCAGGGTGAATTAATGTTGTAATATTTAA 1834
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1835 AACTCATGAGATAGGTTGTTACACTGTTACACACTGTGGCATTGGAATTGTAACTCATTGAGAGAACTAATGTG 1908
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1909 AGAGGGCTCTCTGCAGGGGTAATCCTTCTGATTATCTTGGTTTACAGTTGCAAACCTCCAACAGTCTGTTAGAC 1982
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 1983 TTCTTCTAGGACTCCAGTTACTGACTGCTTTTCATGGTGTTGTGGTACTGTTACTACTCATAGTTGCTGCCTAC 2056
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2057 AGAACAATCTTCAAACTGAGCCATGCTCGAGGGAAGGGAAAGGAACGAAAATTACTTCTGTTGGTAATGTATTA 2130
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2131 GTCTTAAAAAAAAATCCAACAGAAAGGAAGAGAAAGCTACTGTATATTACAGTAAGAAAAGCTGCATAGTCATT 2204
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2205 TTAAATTGAATGGAGATATAAATTACCTATTGTCTACAAGTACTGTTACTTGAGAGTAGCAGGAATATTCTTTT 2278
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2279 AAAGTGAATGCCACCCAGCTTGAAAGTTCTTTTTAAATGATTGGCCATATGAACATCAGCGGTCTCACTGTTAG 2352
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2353 TTTTGGGCCTTGCTGTATTTTATTTTTTCTTTGATTTTAAATAGTTATGTTTAATCTAAAAATATTTATCAATA 2426
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2427 CTGATCAAATTTGAGAATTACTTTGCAATCCTGCTGACTACGTGTATGTATTGTGTATATATTATATATTAAAT 2500
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2501 ATATAATATATTGAGGTTATAAAAGATGAAAATATTGAATCCTTATAATATTTTAAGTTTCAGAACGTACGTTA 2574
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2575 AACAATGATTTGAATGAGATGTATTTGTATCTGGAAATTTCTGTTTGGAATGAGATTAAAATACATTTTTTTAA 2648
Query 1462 -------------------------------------------------------------------------- 1461
Sbjct 2649 AGCTCAACAGAGTGTAATTTATTTGTTGTACATATATGATAATAGTACTTAAAATGTCATGAAGATTAGTTGAT 2722
Query 1462 ----------------------------- 1461
Sbjct 2723 TTCTCACAAATTAAATTTCATTTTCTGTT 2751
