Nucleotide Global Alignment

Description

Query:
TRCN0000469087
Subject:
XM_011527278.3
Aligned Length:
2178
Identities:
1377
Gaps:
588

Alignment

Query    1  ATGACCA-----------------------CGTTCA----------AGGAGGCAATGACCTTCAAGGACGTGGC  41
            ||||..|                       .|||||          ||||||||.|||||||||||||.|||||
Sbjct    1  ATGATAAAGAGAAGCAAAGTACTTGTATTCTGTTCAAAGATTATGGAGGAGGCAGTGACCTTCAAGGATGTGGC  74

Query   42  TGTGGTCTTCACTGAGGAAGAGCTGGGGCTGCTGGACCTTGCTCAGAGGAAGCTGTATCGAGATGTGATGCTGG  115
            ||||||||||||||||||.|||||||||||||||||||.|||.||||||||||||||.||||||||||||||||
Sbjct   75  TGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGG  148

Query  116  AGAACTTCAGGAACCTGCTCTCAGTGGGACATCAAGCATTCCACAGGGATACTTTCCACTTCCTAAGGGAAGAA  189
            ||||||||||||||||||||||||||||.||||||.|.||||||...|||||||.|||||||||||||||||||
Sbjct  149  AGAACTTCAGGAACCTGCTCTCAGTGGGGCATCAACCGTTCCACCAAGATACTTGCCACTTCCTAAGGGAAGAA  222

Query  190  AAGATTTGGATGATGAAGACAGCAATCCAAAGGGAAGGGAATTCAGGAGACAAGATCCAAACTGAGATGGAGAC  263
            |||.|||||||||||..||||||||.||||||.||||||||||||||||.||||||||||||||||.|||||.|
Sbjct  223  AAGTTTTGGATGATGGGGACAGCAACCCAAAGAGAAGGGAATTCAGGAGGCAAGATCCAAACTGAGTTGGAGTC  296

Query  264  TGTTTCAGAAGCAGGAACACATCAAGAGTGGTCCTTCCAGCAAATCTGGGAAAAAATTGCAAGTGATTTAACCA  337
            ||||.|||||||||||.|||||.||||||||||||.||||||||||||||||.|||||||||..||.|||||||
Sbjct  297  TGTTCCAGAAGCAGGAGCACATGAAGAGTGGTCCTGCCAGCAAATCTGGGAACAAATTGCAAAAGACTTAACCA  370

Query  338  GGTCTCAAGACTTGGTGATAAATAGCTCTCAGTTCTCCAAAGAAGGTGATTTCCCCTGCCAGACTGAGGCAGGA  411
            |||||||.||||...|.|||||||.|||||||||||...||.|.||||||.||||||.||||..|||.||||||
Sbjct  371  GGTCTCAGGACTCTATCATAAATAACTCTCAGTTCTTTGAAAATGGTGATGTCCCCTCCCAGGTTGAAGCAGGA  444

Query  412  CTATCTGTAATTCACACAAGACAGAAATCTTCCCAGGGCAATGG---ATATAAACCATCCTTCAGTGATGTCTC  482
            |||.|...||||||.|||.||||||||.||||||||||   |||   .|.|||||..|||.|||||||||| ||
Sbjct  445  CTACCCACAATTCATACAGGACAGAAACCTTCCCAGGG---TGGGAAGTGTAAACAGTCCATCAGTGATGT-TC  514

Query  483  CC-TCTTTGATTTTCATCAACAATTACACTCAGGAGAGAAATCTCATACGTGTGATGAGTGTGGAAAGAACTTT  555
            || ||||||||.|||.|||.||.|||.||||||.||||||.|||.||||.|||||||||||||||||.|.|.|.
Sbjct  515  CCATCTTTGATCTTCCTCAGCAGTTATACTCAGAAGAGAAGTCTTATACATGTGATGAGTGTGGAAAAAGCATC  588

Query  556  TGTTACATCTCAGCCCTTCGTATTCATCAGAGAGTCCACATGGGAGAGAAATGCTATAAGTGTGACGTGTGTGG  629
            ||||||||||||||.||||.|.|||||||||||||||||.|||||||||||..||.||.||||||.||||||||
Sbjct  589  TGTTACATCTCAGCTCTTCATGTTCATCAGAGAGTCCACGTGGGAGAGAAACTCTTTATGTGTGATGTGTGTGG  662

Query  630  TAAGGAATTCAGTCAGAGTTCACATCTGCAAACTCATCAGAGAGTCCACACTGGAGAGAAACCGTTCAAATGTG  703
            .||||||||.|||||.||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct  663  CAAGGAATTTAGTCAAAGCTCACATCTGCAAACTCATCAGAGAGTCCACACTGGAGAGAAACCATTCAAATGTG  736

Query  704  TGGAATGTGGGAAAGGCTTCAGTCGTAGATCAGCACTTAATGTTCATCACAAATTACACACAGGAGAGAAACCT  777
            .|.|||||||||||||.|||||||||||||||||||||||||||||||..||||||||||||||||||||||||
Sbjct  737  AGCAATGTGGGAAAGGTTTCAGTCGTAGATCAGCACTTAATGTTCATCGTAAATTACACACAGGAGAGAAACCT  810

Query  778  TATAATTGTGAGGAATGCGGGAAGGCCTTCATTCACGATTCCCAGCTTCAAGAACATCAGAGAATCCATACGGG  851
            ||.|.||||||||.|||.|||||||||||||||||.||||||||||||.|.||||||.|||||||||||||.||
Sbjct  811  TACATTTGTGAGGCATGTGGGAAGGCCTTCATTCATGATTCCCAGCTTAAGGAACATAAGAGAATCCATACTGG  884

Query  852  GGAGAAGCCATTCAAATGTGATATATGTGGTAAGAGCTTCTGTGGTAGATCAAGACTTAATAGGCATTCCATGG  925
            ||||||.||||||||||||||||||||||||||||.|||||.|..|||.|||||||||||.||.||||||||||
Sbjct  885  GGAGAAACCATTCAAATGTGATATATGTGGTAAGACCTTCTATTTTAGGTCAAGACTTAAGAGCCATTCCATGG  958

Query  926  TTCACACGGCAGAGAAACCATTCCGATGTGATACGTGTGATAAGAGCTTTCGTCAGAGATCAGCACTTAATAGT  999
            |||||||.|.|||.||||||||..|.||||||||.||||||||||||||||.|||||||||||||||||||||.
Sbjct  959  TTCACACAGGAGAAAAACCATTTAGGTGTGATACATGTGATAAGAGCTTTCATCAGAGATCAGCACTTAATAGG  1032

Query 1000  CATCGCATGATCCACACAGGAGAGAAACCATACAAATGTGAGGAGTGTGGAAAAGGCTTTATTTGTAGGCGAGA  1073
            |||.|||||.|||||||||||||||||||.||||.|||||||.||||||||||||||||||||.||||||.|||
Sbjct 1033  CATTGCATGGTCCACACAGGAGAGAAACCGTACAGATGTGAGCAGTGTGGAAAAGGCTTTATTGGTAGGCTAGA  1106

Query 1074  TCTTTATACGCATCATATGGTCCACACGGGAGAAAAGCCATATAATTGTAAAGAGTGTGGGAAGAGCTTCAGAT  1147
            |.||||||.||||||..||||||||||.||||||||.|||||||||||||||||.|||||||||||||||||||
Sbjct 1107  TTTTTATAAGCATCAGGTGGTCCACACAGGAGAAAAACCATATAATTGTAAAGAATGTGGGAAGAGCTTCAGAT  1180

Query 1148  GGGCCTCGTGTCTTTTGAAACATCAGCGAGTCCACAGTGGAGAAAAACCATTCAAATGTGAAGAATGTGGGAAA  1221
            ||.||||.||.||||||||.|||||||||||||||||||||||||||...||||||||||||||||||||.||.
Sbjct 1181  GGTCCTCATGCCTTTTGAACCATCAGCGAGTCCACAGTGGAGAAAAAAGCTTCAAATGTGAAGAATGTGGAAAG  1254

Query 1222  GGATTTTACACAAATTCACAA-TGCTATTCCCACCAGAGATCCCATAGTGGAGAAAAACCATACAAATGTGTGG  1294
            ||||||||.|||||||||||| || |.||||||.|||||||||||.|||||.|||||.|||||.|||||||.||
Sbjct 1255  GGATTTTATACAAATTCACAACTG-TCTTCCCATCAGAGATCCCACAGTGGTGAAAAGCCATATAAATGTGAGG  1327

Query 1295  AGTGTGGGAAGGGC-----TACAAAAGGAGGTTGGATCTTGACTTTCACCAGCGCGTCCATACAGGAGAGAAAC  1363
            ||||||||||||||     |||.||     |||..||||||||||.||||||.|.|||||.||.|||||||.||
Sbjct 1328  AGTGTGGGAAGGGCTATGTTACTAA-----GTTTAATCTTGACTTGCACCAGAGGGTCCACACGGGAGAGAGAC  1396

Query 1364  TGTATAATTGTAAGGAATGTGGGAAGAGCTTTAGTCGGGCCCCATGTCTTTTGAAACATGAGAGACTCCACAGT  1437
            ..|||||||||||||||||||||||||.||||||.||||||.||.||.|||||||.|||.|||||||||||  |
Sbjct 1397  CTTATAATTGTAAGGAATGTGGGAAGAACTTTAGCCGGGCCTCAAGTATTTTGAATCATAAGAGACTCCAC--T  1468

Query 1438  G---GAGAAAAACCATTCCAATGTGAAGAGTGTGGGAAGAG--ATTTACTCAAAATTCACATCTTCATTCCCAT  1506
            |   || |||||||||||.|||||||.||.|||||.|||||  .|.|||.||..|  ||.|.|.|.|...|||.
Sbjct 1469  GCCAGA-AAAAACCATTCAAATGTGAGGACTGTGGAAAGAGGCTTGTACACAGGA--CATACCGTAAAGACCAG  1539

Query 1507  CAGAGAGTTCACACTGGAGAAAAGCCATACAAATGTGAGAAGTGTGGAAAGGGCTACAATAGTAAGTTTAATCT  1580
            |.|||||...|.|.|||.|||||.||||.||||||||||.|.|||||.|...|||||||.||....||.|||||
Sbjct 1540  CCGAGAGACTATAGTGGGGAAAACCCATCCAAATGTGAGGATTGTGGGAGACGCTACAAGAGGCGCTTGAATCT  1613

Query 1581  TGATATGC----ACCAGAAGGTC-----CACACAGGAGAGAGACCATACAATTGTAAGGAATGTGGGAAGAGCT  1645
            .|||||.|    |.||..|..||     .|||||                                        
Sbjct 1614  GGATATACTTTTATCATTATTTCTAAATGACACA----------------------------------------  1647

Query 1646  TTGGCTGGGCCTCGTGTCTTTTGAAACATCAGAGACTGCACAGTGGAGAAAAACCATTCAAATGTGAAGAGTGT  1719
                                                                                      
Sbjct 1648  --------------------------------------------------------------------------  1647

Query 1720  GGGAAAAGATTTACTCAGAATTCACAGCTTCATTCTCATCAAAGAGTGCACACTGGAGAAAAGCCATACAAATG  1793
                                                                                      
Sbjct 1648  --------------------------------------------------------------------------  1647

Query 1794  TGATGAGTGTGGGAAGGGCTTCAGCTGGTCCTCAACTCGTCTGACCCATCAGAGACGCCACAGCAGAGAAACAC  1867
                                                                                      
Sbjct 1648  --------------------------------------------------------------------------  1647

Query 1868  CTCTCAAATGTGAGCAGCATGGGAAGAACATTGTACAGAATTCATTCTCTAAAGTGCAAGAAAAAGTTCACAGT  1941
                                                                                      
Sbjct 1648  --------------------------------------------------------------------------  1647

Query 1942  GTAGAAAAGCCATACAAATGTGAGGACTGTGGGAAGGGCTACAACAGGCGCTTGAATCTTGATATGCATCAGAG  2015
                                                                                      
Sbjct 1648  --------------------------------------------------------------------------  1647

Query 2016  GGTCCACATGGGAGAGAAAACATGGAAGTGTAGGGAGTGTGATATGTGCTTTAGTCAGGCCTCAAGCCTTCGAC  2089
                                                                                      
Sbjct 1648  --------------------------------------------------------------------------  1647

Query 2090  TTCATCAGAATGTTCATGTTGGAGAAAAACCT  2121
                                            
Sbjct 1648  --------------------------------  1647

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