Nucleotide Global Alignment

Description

Query:
TRCN0000469087
Subject:
XM_011527286.2
Aligned Length:
2223
Identities:
1760
Gaps:
207

Alignment

Query    1  ATGACCACGTTCAAGGAGGCAATGACCTTCAAGGACGTGGCTGTGGTCTTCACTGAGGAAGAGCTGGGGCTGCT  74
            |||||||||||.|||||||||.||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct    1  ATGACCACGTTGAAGGAGGCAGTGACCTTCAAGGACGTGGCTGTGGTCTTCACTGAGGAAGAGCTGAGGCTGCT  74

Query   75  GGACCTTGCTCAGAGGAAGCTGTATCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTCAGTGGGACATC  148
            |||||||||.||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.||||
Sbjct   75  GGACCTTGCCCAGAGGAAACTGTACCGAGAAGTGATGCTGGAGAACTTCAGGAACCTGCTCTCAGTGGGGCATC  148

Query  149  AAGCATTCCACAGGGATACTTTCCACTTCCTAAGGGAAGAAAAGATTTGGATGATGAAGACAGCAATCCAAAGG  222
            ||.||.|||||||.|||||||||||||||||||.||||||||||.|||||||||||.|||||||||.||||||.
Sbjct  149  AATCACTCCACAGAGATACTTTCCACTTCCTAAAGGAAGAAAAGTTTTGGATGATGGAGACAGCAACCCAAAGA  222

Query  223  GAAGGGAATTCAGGAGACAAGATCCAAACTGAGATGGAGACTGTTTCAGAAGCAGGAACACATCAAGAGTGGTC  296
            ||||||||||.|||||.|||||||||||..|||||||||||||||||||||.|||||||||||.|||..|.||.
Sbjct  223  GAAGGGAATTTAGGAGGCAAGATCCAAATGGAGATGGAGACTGTTTCAGAATCAGGAACACATGAAGGCTTGTT  296

Query  297  CTTCCAGCAAATCTGGGAAAAAATTGCAAGTGATTTAACCAGGTCTCAAGACTTGGTGATAAATAGCTCTCAGT  370
            |...||.||||.|||||||.|||||.|||||||.||||||||||.||||||||...||.||||.||||.|||||
Sbjct  297  CAGTCATCAAACCTGGGAACAAATTTCAAGTGACTTAACCAGGTTTCAAGACTCCATGGTAAACAGCTTTCAGT  370

Query  371  TCTCCAAAGAAGGTGATTTCCCCTGCCAGACTGAGGCAGGACTATCTGTAATTCACACAAGACAGAAATCTTCC  444
            ||||||||.|||.||||.|.|||||||||..|||.||||||||||||.||||||||..||||||||||.||||.
Sbjct  371  TCTCCAAACAAGATGATATGCCCTGCCAGGTTGATGCAGGACTATCTATAATTCACGTAAGACAGAAACCTTCT  444

Query  445  CAGGGCAATGGA--TATAAACCATCCTTCAGTGATGTCTCCCTCTTTGATTTTCATCAACAATTACACTCAGGA  516
            .||||.|  |||  |.||||...|||||.||||||||||||.||.|||||.|||||||||||.||||.|||.||
Sbjct  445  GAGGGTA--GGACGTGTAAAAAGTCCTTTAGTGATGTCTCCGTCCTTGATCTTCATCAACAACTACAGTCAAGA  516

Query  517  GAGAAATCTCATACGTGTGATGAGTGTGGAAAGAACTTTTGTTACATCTCAGCCCTTCGTATTCATCAGAGAGT  590
            |||||.||||||||.||||||||.||||||||||..||.|||||.|.||||||.||||||||||||||||||||
Sbjct  517  GAGAAGTCTCATACATGTGATGAATGTGGAAAGAGTTTCTGTTATAGCTCAGCTCTTCGTATTCATCAGAGAGT  590

Query  591  CCACATGGGAGAGAAATGCTATAAGTGTGACGTGTGTGGTAAGGAATTCAGTCAGAGTTCACATCTGCAAACTC  664
            .||||||||.||||||..||||||.|||||.|||||||||||||||||||.||||||.|||||||||||||.||
Sbjct  591  TCACATGGGGGAGAAACTCTATAATTGTGATGTGTGTGGTAAGGAATTCAATCAGAGCTCACATCTGCAAATTC  664

Query  665  ATCAGAGAGTCCACACTGGAGAGAAACCGTTCAAATGTGTGGAATGTGGGAAAGGCTTCAGTCGTAGATCAGCA  738
            ||||||||.|||||||||||||||||||.||||||||||.|.|.||||||||||||||.|||||||||||||.|
Sbjct  665  ATCAGAGAATCCACACTGGAGAGAAACCATTCAAATGTGAGCAGTGTGGGAAAGGCTTTAGTCGTAGATCAGGA  738

Query  739  CTTAATGTTCATCACAAATTACACACAGGAGAGAAACCTTATAATTGTGAGGAATGCGGGAAGGCCTTCATTCA  812
            |||.|||||||||..||||||||||||||||.|||||||.|||.|||||||.||||.|||||||||||||||||
Sbjct  739  CTTTATGTTCATCGTAAATTACACACAGGAGTGAAACCTCATATTTGTGAGAAATGTGGGAAGGCCTTCATTCA  812

Query  813  CGATTCCCAGCTTCAAGAACATCAGAGAATCCATACGGGGGAGAAGCCATTCAAATGTGATATATGTGGTAAGA  886
            .||||||||||||||.||||||||.|||||||||||.||||||||||||||||||||||||||||||.||||||
Sbjct  813  TGATTCCCAGCTTCAGGAACATCAAAGAATCCATACTGGGGAGAAGCCATTCAAATGTGATATATGTTGTAAGA  886

Query  887  GCTTCTGTGGTAGATCAAGACTTAATAGGCATTCCATGGTTCACACGGCAGAGAAACCATTCCGATGTGATACG  960
            |||||.||.|||||.|||..|||||||||||||||||||||||||.|..|||||||||||||.||||||||||.
Sbjct  887  GCTTCCGTAGTAGAGCAAATCTTAATAGGCATTCCATGGTTCACATGCGAGAGAAACCATTCAGATGTGATACA  960

Query  961  TGTGATAAGAGCTTTCGTCAGAGATCAGCACTTAATAGTCATCGCATGATCCACACAGGAGAGAAACCATACAA  1034
            ||||.||||||||||.|||.||.|||||||||||||||||||||||||.||||||||||||||||||..|||||
Sbjct  961  TGTGGTAAGAGCTTTGGTCTGAAATCAGCACTTAATAGTCATCGCATGGTCCACACAGGAGAGAAACGGTACAA  1034

Query 1035  ATGTGAGGAGTGTGGAAAAGGCTTTATTTGTAGGCGAGATCTTTATACGCATCATATGGTCCACACGGGAGAAA  1108
            |||||||||.|||||||||.||||.||||.|||||.|||||||||||.||||||.||.|.||||||.||.||.|
Sbjct 1035  ATGTGAGGAATGTGGAAAACGCTTCATTTATAGGCAAGATCTTTATAAGCATCAGATAGACCACACAGGGGAGA  1108

Query 1109  AGCCATATAATTGTAAAGAGTGTGGGAAGAGCTTCAGATGGGCCTCGTGTCTTTTGAAACATCAGCGAGTCCAC  1182
            |||||||||||||||||||.|||||.||||||||||||||||||||..||||||..|.||||..||||||||||
Sbjct 1109  AGCCATATAATTGTAAAGAATGTGGAAAGAGCTTCAGATGGGCCTCAGGTCTTTCAAGACATGTGCGAGTCCAC  1182

Query 1183  AGTGGAGAAAAACCATTCAAATGTGAAGAATGTGGGAAAGGATTTTACACAAATTCACAATGCTATTCCCACCA  1256
            ||||||||.|.|.|||||||||||||||||||||||||.||||||||.||||||||||||.|.|||||.|||||
Sbjct 1183  AGTGGAGAGACAACATTCAAATGTGAAGAATGTGGGAAGGGATTTTATACAAATTCACAACGTTATTCTCACCA  1256

Query 1257  GAGATCCCATAGTGGAGAAAAACCATACAAATGTGTGGAGTGTGGGAAGGGCTACAAAAGGAGGTTGGATCTTG  1330
            ||||.|.||.|||||||||||.|||||.|.|||||.||||||||||||||||||||||||||||||||||||||
Sbjct 1257  GAGAGCGCACAGTGGAGAAAAGCCATATAGATGTGAGGAGTGTGGGAAGGGCTACAAAAGGAGGTTGGATCTTG  1330

Query 1331  ACTTTCACCAGCGCGTCCATACAGGAGAGAAACTGTATAATTGTAAGGAATGTGGGAAGAGCTTTAGTCGGGCC  1404
            |||||||.|||.|.|||||.|.|||||||||||..||||||||||||||||||||||||||||||.|..|||||
Sbjct 1331  ACTTTCATCAGAGGGTCCACAGAGGAGAGAAACCCTATAATTGTAAGGAATGTGGGAAGAGCTTTGGCTGGGCC  1404

Query 1405  CCATGTCTTTTGAAACATGAG-----------------------------------------------------  1425
            .|.|||||||||||.|||.||                                                     
Sbjct 1405  TCGTGTCTTTTGAATCATCAGAGAATCCACAGTGGAGAAAAACCATTTAAATGTGAAGAATGTGGGAAAAGATT  1478

Query 1426  -------------------------------AGACTCCACAGTGGAGAAAAACCATTCCAATGTGAAGAGTGTG  1468
                                           |||.|||||||||||||||||||||||.|||||||||||||||
Sbjct 1479  TACTCAGAATTCACAACTTTATACCCATCGTAGAGTCCACAGTGGAGAAAAACCATTCAAATGTGAAGAGTGTG  1552

Query 1469  GGAAGAGATTTACTCAAAATTCACATCTTCATTCCCATCAGAGAGTTCACACTGGAGAAAAGCCATACAAATGT  1542
            ||||.|||||||||||.||||||||.|||.||||.||||..|||||.||||||||||.||||||||||||||||
Sbjct 1553  GGAAAAGATTTACTCAGAATTCACAACTTTATTCTCATCGCAGAGTCCACACTGGAGTAAAGCCATACAAATGT  1626

Query 1543  GAGAAGTGTGGAAAGGGCTACAATAGTAAGTTTAATCTTGATATGCACCAGAAGGTCCACACAGGAGAGAGACC  1616
            ||..|||||||.|||||||.|||.|||||||||||||||||.||||||||||.|||||||||.|||||||||||
Sbjct 1627  GAAGAGTGTGGGAAGGGCTTCAACAGTAAGTTTAATCTTGACATGCACCAGAGGGTCCACACCGGAGAGAGACC  1700

Query 1617  ATACAATTGTAAGGAATGTGGGAAGAGCTTTGGCTGGGCCTCGTGTCTTTTGAAACATCAGAGACTGCACAGTG  1690
            .||.||||||||.||||||||||||||||||.||.|||||||..||.|||||||.|||.|||||||.||..|||
Sbjct 1701  TTATAATTGTAAAGAATGTGGGAAGAGCTTTAGCCGGGCCTCAAGTATTTTGAATCATAAGAGACTCCATGGTG  1774

Query 1691  GAGAAAAACCATTCAAATGTGAAGAGTGTGGGAAAAGATTTACTCAGAATTCACAGCTTCATTCTCATCAAAGA  1764
            ..|||||.||||||||||||||||||||||||||.|||||||||.|||||||||||||||||||.|||||.||.
Sbjct 1775  ATGAAAAGCCATTCAAATGTGAAGAGTGTGGGAAGAGATTTACTGAGAATTCACAGCTTCATTCCCATCAGAGG  1848

Query 1765  GTGCACACTGGAGAAAAGCCATACAAATGTGATGAGTGTGGGAAGGGCTTCAGCTGGTCCTCAACTCGTCTGAC  1838
            ||.||||||||.||||||||||||||||||||..|||||||.|||.|||||||.|||.|||||||||.|||.||
Sbjct 1849  GTTCACACTGGGGAAAAGCCATACAAATGTGAGAAGTGTGGAAAGAGCTTCAGATGGGCCTCAACTCATCTAAC  1922

Query 1839  CCATCAGAGACGCCACAGCAGAGAAACACCTCTCAAATGTGAGCAGCATGGGAAGAACATTGTACAGAATTCAT  1912
            |||||||||||.||||||.|||||||.||..||..||||||||.|...||||||||.||||||.||.|.|||||
Sbjct 1923  CCATCAGAGACTCCACAGTAGAGAAAAACTACTTCAATGTGAGGACTGTGGGAAGAGCATTGTGCACAGTTCAT  1996

Query 1913  TCTCTAAAGTGCAAGAAAAAGTTCACAGTGTAGAAAAGCCATACAAATGTGAGGACTGTGGGAAGGGCTACAAC  1986
            .|..|||||..|||.|||.||..||.||||.|||.||..|||..|||||||||||||||||||||.|||||||.
Sbjct 1997  GCCTTAAAGACCAACAAAGAGACCAAAGTGGAGAGAAAACATCTAAATGTGAGGACTGTGGGAAGCGCTACAAG  2070

Query 1987  AGGCGCTTGAATCTTGATATGC----ATCA------------GAGGGTCCACATGGGAGAGAAAACATGGAAGT  2044
            |||||||||||||||||||.||    .|||            ||     ||||                     
Sbjct 2071  AGGCGCTTGAATCTTGATACGCTTTTGTCATTATTTTTAAATGA-----CACA---------------------  2118

Query 2045  GTAGGGAGTGTGATATGTGCTTTAGTCAGGCCTCAAGCCTTCGACTTCATCAGAATGTTCATGTTGGAGAAAAA  2118
                                                                                      
Sbjct 2119  --------------------------------------------------------------------------  2118

Query 2119  CCT  2121
               
Sbjct 2119  ---  2118

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