Nucleotide Global Alignment

Description

Query:
TRCN0000469583
Subject:
XR_001748803.2
Aligned Length:
4215
Identities:
1462
Gaps:
2748

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGTCGTCACTAGATCTCTTAAAAAGATGGACCCTCAGCGGCGCTTCCTCGTAGCGAGCCTAGTGGCGGGTGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGCATTGAAACGTGAGCGCGACCCGACCTTAAAGAGTGGGGAGCAAAGGGAGGACAGAGCCCTTTAAAACGAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGGGTGGTGCCTGCCCCTTTAAGGGCGGGGCGTCCGGACGACTGTATCTGAGCCCCAGACTGCCCCGAGTTTCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTCGCAGGCTGCGAGGAAAGGCCCCTAGGCTGGGTCTGGGTGCTTGGCGGCGGCGGCTTCCTCCCCGCTCGTCC  296

Query    1  ----------------------------------------------ATGGAAGCACCTGACTACGAAGTGCTAT  28
                                                          ||||||||||||||||||||||||||||
Sbjct  297  TCCCCGGGCCCAGAGGCACCTCGGCTTCAGTCATGCTGAGCAGAGTATGGAAGCACCTGACTACGAAGTGCTAT  370

Query   29  CCGTGCGAGAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTAC  102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCGTGCGAGAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTAC  444

Query  103  ATCCTCTGCCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACC-----------------------  153
            |||||||||||||||||||||||||||||||||||||||||||||||||||                       
Sbjct  445  ATCCTCTGCCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTTTCATCCTACAAAATGGG  518

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct  519  CGTAACAATGTCTACCTACTCCATTGTGTGGACCAAAGGAGATGGTTAATGTGAAAGCCCTTTGTGAACCTGAA  592

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct  593  GTGAGCAACTGCTGGATGAATGTCATTACGGGCACAGGCTCTGTGTCATCTCCTCTCCTAGTGCTTCCACAGCC  666

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct  667  AGGACCAGAGACCTCCCTGATGACTGGGGAACCTGGTGATGGTGGCCTTTCTCTTTATGGGGAGCCTGAGTATG  740

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct  741  CTCAGATCGCAGCTTTCCTTCCCTAGACATTGTGTAATTGGGGGTGGGGGCACACTTGCCCCAGTTCCTAGCTC  814

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct  815  CAGCCTTTCCTCCTCTTAGGATGGCTCAGGATGAGTCCCCCCTCAACAAGGCAGCTACCCAAGAGTAATTCCCC  888

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct  889  TGGGGACTTTCTGTGTGAATCTCCCCTTCCCCCTCCTCTCTTTTCCCTTTCCTGGACCCAGCCACTGATGTAAC  962

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct  963  CAACCTCACAGACTAGTTGTTTATTATATTAATAGTTTGAGCATATAAAGAGGAACTTGTGATGGGAGAGATCT  1036

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 1037  AGGGAGGAGTAAAGAAGTATAGGAATGTCTGGCCTGTATTCTCTTCACCTGGGACCACTGATTTTTAAGCTGCC  1110

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 1111  ACCTTGGCTGGAGAACAGGCTATGGAGTTCATAATGTGTGGTCTCCTGGAGCCTCCTGTTCAGCTCTGCCTTCT  1184

Query  154  --------------------------------------------------------------------------  153
                                                                                      
Sbjct 1185  TTGAGGGGGCAGGGATGGGGCAGGGAGCACATTGTAATACTAACGGCCTCAGAGCTGCCCCCTGATGTCCTCCT  1258

Query  154  --------------------------ACAGTGGATGATGAAGATGCCACCGTCAACAAGATTGCGCTCGAGCTG  201
                                      ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GCCTGTTCCCCGTGCCTCTGTCTCTTACAGTGGATGATGAAGATGCCACCGTCAACAAGATTGCGCTCGAGCTG  1332

Query  202  TGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATCATCAGCAATGAGGTGCT  275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATCATCAGCAATGAGGTGCT  1406

Query  276  GCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGGCCTCTGGAACCTTGTTT  349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGGCCTCTGGAACCTTGTTT  1480

Query  350  TTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTGAGTCTGAGGGCTTTGCT  423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTGAGTCTGAGGGCTTTGCT  1554

Query  424  GGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTCCTCACTCTGCTGGTGCT  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTCCTCACTCTGCTGGTGCT  1628

Query  498  AGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTCACTCTATGACTTTTGGG  571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  AGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTCACTCTATGACTTTTGGG  1702

Query  572  AGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCCTGGTGTGTACTCCACTG  645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCCTGGTGTGTACTCCACTG  1776

Query  646  GGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTGGAAGACCTGGAGGAGCA  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTGGAAGACCTGGAGGAGCA  1850

Query  720  GCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTACTTCCTGCTGGCTGCCTT  793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTACTTCCTGCTGGCTGCCTT  1924

Query  794  TAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGCTGGAGAAGAGGCGGAAG  867
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGCTGGAGAAGAGGCGGAAG  1998

Query  868  GCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTGCTGACGGGCCTGTCTGT  941
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTGCTGACGGGCCTGTCTGT  2072

Query  942  GCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCGAGGCATGCAGGGTAC--  1013
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||...||  
Sbjct 2073  GCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCGAGGCATGCAGCAAACCT  2146

Query 1014  --CTCCT-------TAGGCC-AG---------------GTCTCCTT-----CTC----CAA-GCTG--------  1044
              |||||       |||.|| ||               ||||||||     |||    ||| ||||        
Sbjct 2147  GTCTCCTGGGACTCTAGACCGAGCACTTCTTGGACTTTGTCTCCTTTGGGACTCTGAGCAACGCTGATGGGAAG  2220

Query 1045  --------------------------------------------------------------------------  1044
                                                                                      
Sbjct 2221  TGGGGCAAGTTTTCATCAACCTCAGGTTCAGAAAGAAGGAAAAGACTTAATTTGAAAGGAGGGCTGGTGGTTCA  2294

Query 1045  -------------------------------------------GGCTC------------------CTTTGG--  1055
                                                       |||||                  ||||||  
Sbjct 2295  GTAGAATCTGATCAGAAGAAAATAAAAAGAGGCCAGGTGCAGTGGCTCACACCTGTAATCCTAGCACTTTGGGA  2368

Query 1056  -----------------TGC------------------------------------------------------  1058
                             |||                                                      
Sbjct 2369  GGCTGAGGCGGGTAGATTGCTTGAGTTTAGGATTTCAAGACCAGCCTGAGCAACATGGTGAAACCCGGCCTCTA  2442

Query 1059  -------------------------CGT---------------CATTC--------------------------  1066
                                     |||               |||||                          
Sbjct 2443  CAAAAAGTACAAAAAATTAGCCAGACGTGGTGGTGCGTGCTTGCATTCCCAGCTACGTGGGAGGCTGACGTGGG  2516

Query 1067  -------------------------AGGTTGTA-----------------------------------------  1074
                                     ||||||.|                                         
Sbjct 2517  AAGATCGCTTAAGCCCAGAAGGTCAAGGTTGCAGTGAGCTGAAATCGCACCACTGCACTCCAGCCTGGGTGACA  2590

Query 1075  --------------CTCA--------------------------------------------------------  1078
                          ||||                                                        
Sbjct 2591  AAGTGAGACCCTGTCTCAAAAAAAAAAAAAGAAGTGGGCTGGGAGAGAGCTCTGTTCCCTTTGAGATGAGTTAT  2664

Query 1079  ----TCTT----------------------------------TTACCTAATGGTGTCCTCAGTTGTGGGCTTCT  1114
                ||||                                  ||||||||||||||||||||||||||||||||
Sbjct 2665  TAATTCTTGGAGCCAGCCAGTTCTTCCTTAATGCAGTGGCAGTTACCTAATGGTGTCCTCAGTTGTGGGCTTCT  2738

Query 1115  ATAGCTCTCCACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGT  1188
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  ATAGCTCTCCACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGT  2812

Query 1189  GTCTGTCTCCTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCT  1262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  GTCTGTCTCCTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCT  2886

Query 1263  GGGTGACTTTGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCC  1336
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  GGGTGACTTTGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCC  2960

Query 1337  TCACCACACTCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGAC  1410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961  TCACCACACTCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGAC  3034

Query 1411  AGACTGCCGCTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAG-----------------  1467
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 3035  AGACTGCCGCTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAGTGACCTCCAGCTGGGGG  3108

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3109  TGGGAAGGAAAAAACTGGACACTGCCATCTGCTGCCTAGGCCTGGAGGGAAGCCCAAGGCTACTTGGACCTCAG  3182

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3183  GACCTGGAATCTGAGAGGGTGGGTGGCAGAGGGGAGCAGAGCCATCTGCACTATTGCATAATCTGAGCCAGAGT  3256

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3257  TTGGGACCAGGACCTCCTGCTTTTCCATACTTAACTGTGGCCTCAGCATGGGGTAGGGCTGGGTGACTGGGTCT  3330

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3331  AGCCCCTGATCCCAAATCTGTTTACACATCAATCTGCCTCACTGCTGTTCTGGGCCATCCCCATAGCCATGTTT  3404

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3405  ACATGATTTGATGTGCAATAGGGTGGGGTAGGGGCAGGGAAAGGACTGGGCCAGGGCAGGCTCGGGAGATAGAT  3478

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3479  TGTCTCCCTTGCCTCTGGCCCAGCAGAGCCTAAGCACTGTGCTATCCTGGAGGGGCTTTGGACCACCTGAAAGA  3552

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3553  CCAAGGGGATAGGGAGGAGGAGGCTTCAGCCATCAGCAATAAAGTTGATCCCAGGGTTTGCTTTGTTTTTTTAA  3626

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3627  AGCACCTGTCTCTGTGTATATTTGAACAGCCTTGCTCCCACCAGCCCGGCGTCTGCCCAGTAAGAGAAGCAGAG  3700

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3701  GGGTCCTGCCCACCATCCTTTTCCTTCCCCTTCATCTATATTATTACCATCCTTTGGGGACTTGGATCTGGTGT  3774

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3775  TAGGCCATGCAGTTGGGCAGTGGGAAACTCCTCCATCCTCAGTCTTGCTTAAAGCTGGCTTGTCCCCTGACTCC  3848

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3849  TCCTTATATTCATGGCCTTGTTTCTGTACCTTGAGTATTGGGGGTAGGACATGGGCATAGGAGTAGGCTAACCT  3922

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3923  CCCCGATACACTCATACCTTCAGCCCTATCCTCCCTGGCTTAACTATTGGATATAGAGTAAAATAAGTGGCTGG  3996

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 3997  CTGACAAGGATTTTCATTTCCTACCTGAGAGAAGAATCTAGCTTTTTACTAGAGGCCATCAGTTTCTTGAAAAG  4070

Query 1468  --------------------------------------------------------------------------  1467
                                                                                      
Sbjct 4071  CCCATGTGCTATGTTGGGAGTAAGAGCGCAAAACTTAGGCTTATACAGATTGTGTATTGCACAGCTTCCAGGGA  4144

Query 1468  -----------------------------------------------------------------------  1467
                                                                                   
Sbjct 4145  CACCATTCACCTCATAGTCATTGTGTGGATAGTTACTATGATAGTTTTCTAATAAATGTCAGTCATCTTGA  4215

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.