Nucleotide Global Alignment
Description
- Query:
- TRCN0000469592
- Subject:
- XR_001784730.1
- Aligned Length:
- 4303
- Identities:
- 2472
- Gaps:
- 1530
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGTCTCGCGGCCTCGCGCTCGCTCGCTCGCCGCGCTCTCCGGCCCCAGCTCCGGGCCGCTCGTGCAGGCGCGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCGCGGGGCGCCGGGGCCTGAGGCGGCGGGCGACGCCCGGGGGGCGGGTGGGGGCCGAGGGAGGACCGCCAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCATGGTGTGAGCTCCGCGGCCAGCGCTCTCCGCGCCGCGCTCCGCTCCGACCGGACGACAAGCCGCCCGGGCG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCGGCGGCCTGCCCGTGCGGCCCGAGCCCCGGCGCCGCCGAGCCCCTGCCCGTCTCTCGCTCTCTCGCCCGCTC 296
Query 1 ----------------------ATGGCGAACGACTCCCCTGCAAAAAGTCTGGTGGACATCGACCTCTCCTCCC 52
||||||||||||||.||.||.||.||.|||||||||||.|||||.||.||||
Sbjct 297 CCGGAGCGGCGACCCGGGGAAGATGGCGAACGACTCTCCCGCGAAGAGCCTGGTGGACATTGACCTGTCGTCCC 370
Query 53 TGCGGGATCCTGCTGGGATTTTTGAGCTGGTGGAAGTGGTTGGAAATGGCACCTATGGACAAGTCTATAAGGGT 126
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TGCGGGACCCTGCTGGGATTTTTGAGCTGGTGGAAGTGGTTGGAAATGGCACCTATGGACAAGTCTATAAGGGT 444
Query 127 CGACATGTTAAAACGGGTCAGTTGGCAGCCATCAAAGTTATGGATGTCACTGAGGATGAAGAGGAAGAAATCAA 200
|||||||||||||||||||||.||||.||||||||.||||||||.|||||.|||||||||||||||||||||||
Sbjct 445 CGACATGTTAAAACGGGTCAGCTGGCCGCCATCAAGGTTATGGACGTCACCGAGGATGAAGAGGAAGAAATCAA 518
Query 201 ACTGGAGATAAATATGCTAAAGAAATACTCTCATCACAGAAACATTGCAACATATTATGGTGCTTTCATCAAAA 274
||||||||||||||||||.|||||.||.||||||||..||||.|||||.||.||.||||||||||||||.||.|
Sbjct 519 ACTGGAGATAAATATGCTGAAGAAGTATTCTCATCATCGAAATATTGCCACGTACTATGGTGCTTTCATTAAGA 592
Query 275 AGAGCCCTCCAGGACATGATGACCAACTCTGGCTTGTTATGGAGTTCTGTGGGGCTGGGTCCATTACAGACCTT 348
||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||||||
Sbjct 593 AGAGCCCTCCAGGACATGATGACCAACTCTGGCTTGTTATGGAGTTTTGTGGGGCTGGGTCCATCACAGACCTT 666
Query 349 GTGAAGAACACCAAAGGGAACACACTCAAAGAAGACTGGATCGCTTACATCTCCAGAGAAATCCTGAGGGGACT 422
|||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.||||||||.||||||.|
Sbjct 667 GTGAAGAACACCAAAGGGAACACTCTCAAAGAAGACTGGATTGCTTACATCTCCAGGGAAATCCTCAGGGGATT 740
Query 423 GGCACATCTTCACATTCATCATGTGATTCACCGGGATATCAAGGGCCAGAATGTGTTGCTGACTGAGAATGCAG 496
|||||||||.||.|||||.||.||.||||||||.||||||||||||||.||||||.|||||||.||||||||.|
Sbjct 741 GGCACATCTCCATATTCACCACGTTATTCACCGAGATATCAAGGGCCAAAATGTGCTGCTGACCGAGAATGCTG 814
Query 497 AGGTGAAACTTGTTGACTTTGGTGTGAGTGCTCAGCTGGACAGGACTGTGGGGCGGAGAAATACGTTCATAGGC 570
||||||||||||||||.||||||||.||.|||||||||||||||||.||.||.|||||||||||||||||||||
Sbjct 815 AGGTGAAACTTGTTGATTTTGGTGTAAGCGCTCAGCTGGACAGGACGGTTGGACGGAGAAATACGTTCATAGGC 888
Query 571 ACTCCCTACTGGATGGCTCCTGAGGTCATCGCCTGTGATGAGAACCCAGATGCCACCTATGATTACAGAAGTGA 644
||.|||||||||||||||||.|||||||||||||||||||||||||||||.|||||.||.||.|||||||||||
Sbjct 889 ACACCCTACTGGATGGCTCCAGAGGTCATCGCCTGTGATGAGAACCCAGACGCCACTTACGACTACAGAAGTGA 962
Query 645 TCTTTGGTCTTGTGGCATTACAGCCATTGAGATGGCAGAA-GTGCTCCCCCTCTCTGTGACATGCATCCAATGA 717
.||.|||||.||||||||.||||||||.||||||||.||| |.||.||||||||||||||||||||||||||||
Sbjct 963 CCTCTGGTCCTGTGGCATCACAGCCATCGAGATGGCTGAAGGGGCCCCCCCTCTCTGTGACATGCATCCAATGA 1036
Query 718 GAGCACTGTTTCTCATTCCCAGAAACCCTCCTCCCCGGCTGAAGTCAAAAAAATGGTCGAAGAAGTTTTTTAGT 791
||||.|||||||||||.||||||||||||||||||.||||||||||||||||||||||.|||||.|||||.||.
Sbjct 1037 GAGCGCTGTTTCTCATCCCCAGAAACCCTCCTCCCAGGCTGAAGTCAAAAAAATGGTCAAAGAAATTTTTCAGC 1110
Query 792 TTTATAGAAGGGTGCCTGGTGAAGAATTACATGCAGCGGCCCTCTACAGAGCAGCTTTTGAAACATCCTTTTAT 865
|||||||||||.||.||||||||||||||||||||||||||||||||||||||.|||||.|||||.|||||.||
Sbjct 1111 TTTATAGAAGGCTGTCTGGTGAAGAATTACATGCAGCGGCCCTCTACAGAGCAACTTTTAAAACACCCTTTCAT 1184
Query 866 AAGGGATCAGCCAAATGAAAGGCAAGTTAGAATCCAGCTTAAGGATCATATAGATCGTACCAGGAAGAAGAGAG 939
||||||||||||.|||||||||||.|||.|||||||||||||||||||.|||||.||.|||||.||||||||||
Sbjct 1185 AAGGGATCAGCCCAATGAAAGGCAGGTTCGAATCCAGCTTAAGGATCACATAGACCGGACCAGAAAGAAGAGAG 1258
Query 940 GCGAGAAAGATGAAACTGAGTATGAGTACAGTGGGAGTGAGGAAGAAGAGGAGGAAGTGCCTGAACAGGAAGGA 1013
|||||||||||||.||.|||||.||||||||.|||||.|||||.||.|||||||||||||||||.|||||.|||
Sbjct 1259 GCGAGAAAGATGAGACGGAGTACGAGTACAGCGGGAGCGAGGAGGAGGAGGAGGAAGTGCCTGAGCAGGAGGGA 1332
Query 1014 GAGCCAAGTTCCATTGTGAACGTGCCTGGTGAGTCTACTCTTCGCCGAGATTTCCTGAGACTGCAGCAGGAGAA 1087
||||||||||||||.||.||.||||||||.|||||.|||||.||.||.||||||||||||||||||||||||||
Sbjct 1333 GAGCCAAGTTCCATCGTCAATGTGCCTGGAGAGTCAACTCTGCGACGTGATTTCCTGAGACTGCAGCAGGAGAA 1406
Query 1088 CAAGGAACGTTCCGAGGCTCTTCGGAGACAACAGTTACTACAGGAGCAACAGCTCCGGGAGCAGGAAGAATATA 1161
||||||.||.||.||||||||.||||||||.|||.|.||.||||||||.|||||||||||||||||.||.||||
Sbjct 1407 CAAGGAGCGGTCTGAGGCTCTGCGGAGACAGCAGCTTCTGCAGGAGCAGCAGCTCCGGGAGCAGGAGGAGTATA 1480
Query 1162 AAAGGCAACTGCTGGCAGAGAGACAGAAGCGGATTGAGCAGCAGAAAGAACAGAGGCGACGGCTAGAAGAGCAA 1235
|.|||||.||||||||.|||||.||||||||||||||.||||||||||||||||||.|.|||||.|||||||||
Sbjct 1481 AGAGGCAGCTGCTGGCTGAGAGGCAGAAGCGGATTGAACAGCAGAAAGAACAGAGGAGGCGGCTGGAAGAGCAA 1554
Query 1236 CAAAGGAGAGAGCGGGAAGCTAGAAGGCAGCAGGAACGTGAACAGCGAAGGAGAGAACAAGAAGAAAAGAGGCG 1309
|||||.|||||.||||||||.||.|||||||||||.|||||.|||||..||.|.||||||||.||.||||||||
Sbjct 1555 CAAAGAAGAGAACGGGAAGCCAGGAGGCAGCAGGAGCGTGAGCAGCGGCGGCGTGAACAAGAGGAGAAGAGGCG 1628
Query 1310 TCTAGAGGAGTTGGAGAGAAGGCGCAAAGAAGAAGAGGAGAGGAGACGGGCAGAAGAAGAAAAGAGGAGAGTTG 1383
|||.|||||..||||.||..||||.||||||||.||.||||||||||||||||||||.||.|||||||||||.|
Sbjct 1629 TCTCGAGGAACTGGAAAGGCGGCGTAAAGAAGAGGAAGAGAGGAGACGGGCAGAAGAGGAGAAGAGGAGAGTGG 1702
Query 1384 AAAGAGAACAGGAGTATATCAGGCGACAGCTAGAAGAGGAGCAGCGGCACTTGGAAGTCCTTCAGCAGCAGCTG 1457
|.||.|||||||||||.||||||||.||||||||.|||||||||||||||.||||..||||.||||||||||||
Sbjct 1703 AGAGGGAACAGGAGTACATCAGGCGGCAGCTAGAGGAGGAGCAGCGGCACCTGGAGATCCTGCAGCAGCAGCTG 1776
Query 1458 CTCCAGGAGCAGGCCATGTTACT--------------------------------------------------- 1480
|||||||||||||||||||||||
Sbjct 1777 CTCCAGGAGCAGGCCATGTTACTGGAGTGCCGATGGCGGGAGATGGAGGAGCACCGGCAGGCAGAGAGGCTCCA 1850
Query 1481 ------------------------------------------GCATGACCATAGGAGGCCGCACCCGCAGCACT 1512
|||.|||||.||||||||||||.|.|||||
Sbjct 1851 GAGGCAGTTGCAACAAGAACAAGCATATCTCCTGTCTCTACAGCACGACCACAGGAGGCCGCACGCACAGCA-- 1922
Query 1513 CGCAGCAGCCGCCACCACCGCAGCAGGAAAGGAGCAAGCCAAGCTTCCATGCTCCCGAGCCCAAAGCC-CACTA 1585
|||||.||||||.||.|.|||||||||.||||||||.||.|||||.||||||||.|||||| ||||| |||||
Sbjct 1923 -GCAGCCGCCGCCCCCGCAGCAGCAGGACAGGAGCAAACCGAGCTTTCATGCTCCAGAGCCC-AAGCCTCACTA 1994
Query 1586 CGAGCCTGCTGACCGAGCGCGAGA-------------------------------------------------- 1609
.||.|||||||||.||||.||.||
Sbjct 1995 TGACCCTGCTGACAGAGCTCGGGAGGTGGAAGATAGATTTAGAAAGACTAACCACAGCTCCCCTGAGGCCCAGG 2068
Query 1610 -------------------------------------------------------------------------- 1609
Sbjct 2069 CTAAGCAAACGGGCAGAGGACTGGAGCCACCCGTGCCTTCCCGGTCAGAGTCTTTTTCCAATGGCAACTCCGAG 2142
Query 1610 -------------------------------------------------------------------------- 1609
Sbjct 2143 TCTGTGCACCCTGCCCTGCAGAGACCAGCGGAGCCACAGGTACAGTGGTCCCACCTGGCATCTCTCAAGAACAA 2216
Query 1610 -------------------------------------------------------------------------- 1609
Sbjct 2217 TGTCTCCCCTGTCTCGAGATCCCATTCCTTCAGTGACCCTTCTCCCAAATTCGCACACCACCATCTCCGCTCTC 2290
Query 1610 -------------------------------------------------------------------------- 1609
Sbjct 2291 AGGACCCATGTCCACCTTCCCGCAGTGAGGGGCTCAGTCAGAGCTCTGACTCTAAGTCGGAGGTGCCCGAGCCC 2364
Query 1610 -----------------------------------------------GGTTCCTGTGAGAACAACATCTCGCTC 1636
||||||.||||||||.||.|||||.||
Sbjct 2365 ACCCAAAAGGCTTGGTCTAGATCAGACAGTGACGAGGTGCCTCCAAGGGTTCCCGTGAGAACGACCTCTCGTTC 2438
Query 1637 CCCTGTTCTGTCCCGTCGAGATTCCCCACTGCAGGGCAGTGGGCAGCAGAATAGCCAGGCAGGACAGAGAAACT 1710
||||||.||.||||||||.||||||||||||||||||.||||.||||||||||||||.||||||||||||||.|
Sbjct 2439 CCCTGTCCTCTCCCGTCGGGATTCCCCACTGCAGGGCGGTGGACAGCAGAATAGCCAAGCAGGACAGAGAAATT 2512
Query 1711 CCACCAGCAGTATTGAGCCCAGGCTTCTGTGGGAGAGAGTGGAGAAGCTGGTGCCCAGACCTGGCAGTGGCAGC 1784
||||||||||||||||||||.|||||||.||||||||||||||.||||||||.|||||.||.||||||||||||
Sbjct 2513 CCACCAGCAGTATTGAGCCCCGGCTTCTTTGGGAGAGAGTGGAAAAGCTGGTCCCCAGGCCAGGCAGTGGCAGC 2586
Query 1785 TCCTCAGGGTCCAGCAACTCAGGATCCCAGCCCGGGTCTCACCCTGGGTCTCAGAGTGGCTCCGGGGAACGCTT 1858
||.|||||||||||||||||||||||||||||.||.||.||.||||||||||||||.||||||||.||||||||
Sbjct 2587 TCTTCAGGGTCCAGCAACTCAGGATCCCAGCCTGGCTCCCATCCTGGGTCTCAGAGCGGCTCCGGTGAACGCTT 2660
Query 1859 CAGAGTGAGATCATCATCCAAGTCTGAAGGCTCTCCATCTCAGCGCCTGGAAAATGCAGTGAAAAAACCTGAAG 1932
||||||||||||||||||||||||||||||.||||||||.|..||||.|||||.|||||..|||||.|||||.|
Sbjct 2661 CAGAGTGAGATCATCATCCAAGTCTGAAGGTTCTCCATCGCCACGCCAGGAAAGTGCAGCCAAAAAGCCTGACG 2734
Query 1933 ATAAAAAGGAAGTTTTCAGACCCCTCAAGCCTGCTGGCGAAGTGGATCTGACCGCACTGGCCAAAGAGCTTCGA 2006
||||.||.|||||.|||.|.||.|||||||||||.||.||||||||..||||.||..|||||||||||||||||
Sbjct 2735 ATAAGAAAGAAGTATTCCGGCCTCTCAAGCCTGCGGGAGAAGTGGACTTGACTGCGTTGGCCAAAGAGCTTCGA 2808
Query 2007 GCAGTGGAAGATGTACGGCCACCTCACAAAGTAACGGACTACTCCTCATCCAGTGAGGAGTCGGGGACGACGGA 2080
||||||||||||||.||||||||||||||||||||.||||||||.||.||||||||||||||.|||||.||.||
Sbjct 2809 GCAGTGGAAGATGTTCGGCCACCTCACAAAGTAACAGACTACTCATCCTCCAGTGAGGAGTCTGGGACCACAGA 2882
Query 2081 TGAGGAGGACGACGATGTGGAGCAGGAAGGGGCTGACGAGTCCACCTCAGGACCAGAGGACACCAGAGCAGCGT 2154
|||||||||.||.||.|||||.|||||.||||||||.||.||.|||||.||||||||.||||||||||||||||
Sbjct 2883 TGAGGAGGAGGAGGACGTGGAACAGGAGGGGGCTGATGATTCTACCTCGGGACCAGAAGACACCAGAGCAGCGT 2956
Query 2155 CATCTCTGAATTTGAGCAATGGTGAAACGGAATCTGTGAAAACCATGATTGTCCATGATGATGTAGAAAGTGAG 2228
||||||.|||..|||||||.||||||||.||||||||||||||.|||||.||.|||||||||||||||||||||
Sbjct 2957 CATCTCCGAACCTGAGCAACGGTGAAACAGAATCTGTGAAAACAATGATCGTTCATGATGATGTAGAAAGTGAG 3030
Query 2229 CCGGCCATGACCCCATCCAAGGAGGGCACTCTAATCGTCCGCCAGACTCAGTCCGCTAGTAGCACACTCCAGAA 2302
||.|||||||||||.||||||||||||||.||.||||||||||
Sbjct 3031 CCAGCCATGACCCCGTCCAAGGAGGGCACCCTCATCGTCCGCC------------------------------- 3073
Query 2303 ACACAAATCTTCCTCCTCCTTTACACCTTTTATAGACCCCAGATTACTACAGATTTCTCCATCTAGCGGAACAA 2376
|||||||||.|||||||||||.|||||||||||.||.||.|
Sbjct 3074 ---------------------------------AGACCCCAGGTTACTACAGATCTCTCCATCTAGTGGGACGA 3114
Query 2377 CAGTGACATCTGTGGTGGGATTTTCCTGTGATGGGATGAGACCAGAAGCCATAAGGCAAGATCCTACCCGGAAA 2450
|||||||.||.||||||||||||||||||||||||.|||||||||||||||||||||||||||||||.||||||
Sbjct 3115 CAGTGACTTCCGTGGTGGGATTTTCCTGTGATGGGCTGAGACCAGAAGCCATAAGGCAAGATCCTACTCGGAAA 3188
Query 2451 GGCTCAGTGGTCAATGTGAATCCTACCAACACTAGGCCACAGAGTGACACCCCGGAGATTCGTAAATACAAGAA 2524
||||||||||||||||||||.||.||.||||||||||||||||||||.|||||.||||||||||||||||||||
Sbjct 3189 GGCTCAGTGGTCAATGTGAACCCCACGAACACTAGGCCACAGAGTGATACCCCCGAGATTCGTAAATACAAGAA 3262
Query 2525 GAGGTTTAACTCTGAGATTCTGTGTGCTGCCTTATGGGGAGTGAATTTGCTAGTGGGTACAGAGAGTGGCCTGA 2598
|||.||||||||.|||||.||||||||||||||||||||||||||.|||||.||.|||||||||||.||.||||
Sbjct 3263 GAGATTTAACTCAGAGATCCTGTGTGCTGCCTTATGGGGAGTGAACTTGCTGGTTGGTACAGAGAGCGGTCTGA 3336
Query 2599 TGCTGCTGGACAGAAGTGGCCAAGGGAAGGTCTATCCTCTTATCAACCGAAGACGATTTCAACAAATGGACGTA 2672
||||..||||||||||||||||||||||.||.||.|||||.||||.|||||||||.||.||.||||||||.||.
Sbjct 3337 TGCTCTTGGACAGAAGTGGCCAAGGGAAAGTATACCCTCTGATCAGCCGAAGACGGTTCCAGCAAATGGATGTG 3410
Query 2673 CTTGAGGGCTTGAATGTCTTGGTGACAATATCTGGCAAAAAGGATAAGTTACGTGTCTACTATTTGTCCTGGTT 2746
||.||.|||.|.||||||.||||||||||||||||||||||||||||||||||||||||||||||.||||||.|
Sbjct 3411 CTCGAAGGCCTAAATGTCCTGGTGACAATATCTGGCAAAAAGGATAAGTTACGTGTCTACTATTTATCCTGGCT 3484
Query 2747 AAGAAATAAAATACTTCACAATGATCCAGAAGTTGAGAAGAAGCAGGGATGGACAACCGTAGGGGATTTGGAAG 2820
|||||||||.||.|||||.|||||||||||.|||||||||||||||||.|||||.||.||.||.||.|||||||
Sbjct 3485 AAGAAATAAGATTCTTCATAATGATCCAGAGGTTGAGAAGAAGCAGGGGTGGACCACTGTGGGCGACTTGGAAG 3558
Query 2821 GATGTGTACATTATAAAGTTGTAAAATATGAAAGAATCAAATTTCTGGTGATTGCTTTGAAGAGTTCTGTGGAA 2894
|.||.||.||.||||||||.|
Sbjct 3559 GGTGCGTGCACTATAAAGTCG----------------------------------------------------- 3579
Query 2895 GTCTATGCGTGGGCACCAAAGCCATATCACAAATTTATGGCCTTTAAGTCATTTGGAGAATTGGTACATAAGCC 2968
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 2969 ATTACTGGTGGATCTCACTGTTGAGGAAGGCCAGAGGTTGAAAGTGATCTATGGATCCTGTGCTGGATTCCATG 3042
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3043 CTGTTGATGTGGATTCAGGATCAGTCTATGACATTTATCTACCAACACATGTAAGAAAGAACCCACACTCTATG 3116
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3117 ATCCAGTGTAGCATCAAACCCCATGCAATCATCATCCTCCCCAATACAGATGGAATGGAGCTTCTGGTGTGCTA 3190
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3191 TGAAGATGAGGGGGTTTATGTAAACACATATGGAAGGATCACCAAGGATGTAGTTCTACAGTGGGGAGAGATGC 3264
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3265 CTACATCAGTAGCATATATTCGATCCAATCAGACAATGGGCTGGGGAGAGAAGGCCATAGAGATCCGATCTGTG 3338
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3339 GAAACTGGTCACTTGGATGGTGTGTTCATGCACAAAAGGGCTCAAAGACTAAAATTCTTGTGTGAACGCAATGA 3412
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3413 CAAGGTGTTCTTTGCCTCTGTTCGGTCTGGTGGCAGCAGTCAGGTTTATTTCATGACCTTAGGCAGGACTTCTC 3486
Sbjct 3580 -------------------------------------------------------------------------- 3579
Query 3487 TTCTGAGCTGG 3497
Sbjct 3580 ----------- 3579
