Nucleotide Global Alignment
Description
- Query:
- TRCN0000471001
- Subject:
- XM_011537684.3
- Aligned Length:
- 3572
- Identities:
- 1607
- Gaps:
- 1951
Alignment
Query 1 ATGGGGCCACGAAAGAAAAGTGTGAAAACATGTATCATGAATAATGAAATTCCAGAAGAAATGACAGCAGATGA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AACAAAGGACTATATGAATCAACTTTCACATGAAGTACTTTGCCATATTTTTAGGTACCTCCCTCTGCAGGATA 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCATGTGTATGGAATGTCTTTCCCGGAAGCTAAAGGAAGCAGTGACCCTATATCTGCGAGTTGTGAGAGTTGTA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GATCTCTGTGCAGGGCGGTGGTGGGAATACATGCCAAGTGGCTTTACAGATGCCAGTTTTCTAACACTATTAAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GAAGATGCCAGATGTTGAACAGCTATATGGCCTTCACCCTCGATACCTTGAGAGGCGAAGAGTAAGGGGCCATG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 AGGCTTTTAGCATTCCAGGAGTCCTAGAAGCTTTGCAGGCATGCCCAAACTTAGTGGGTGTGGAAACTTCTCAT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TTGGAGTTGGTAGAATCCATTTGGACATATATGCCCCATGTTCATATTTTGGGGAAATTTCGTAATCGTAATGG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 AGCTTTTCCAATTCCTCCTGAAAATAAACTGAAAATTCCTATAGGAGCCAAAATTCAAACTTTACATTTAGTTG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GGGTGAATGTTCCTGAAATTCCTTGTATCCCAATGCTAAGGCACCTTTATATGAAGTGGGTAAGACTCACTAAA 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 CCACAGCCATTTAAAGACTTCCTTTGTATCAGCTTAAGAACTTTCGTCATGAGGAACTGTGCAGGACCCACAAA 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TTCCTTGAAATATGTCCCTTTAGTAACAGGCTTAGCCTCTGCCCGAAACTTGGAACACTTAGAAATGGTTCGAG 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TTCCTTTCCTTGGAGGTCTTATCCAACATGTTGTTGAAGACAGTTGGAGATCAGGTGGTTTTAGAAATTTGCAC 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 ACTATTGTTCTGGGAGCTTGCAAAAATGCTCTTGAAGTAGATCTTGGTTACCTCATCATTACTGCTGCCCGTAG 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 GTTACATGAAGTTCGGATCCAGCCTTCCCTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAGTTGG 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 AGTTTCCCCAGTTTGAAACCCTTCATCTAGGATATGTAGATGAGTTTTTGCTACAGAGCAGAATGGCTAATGCG 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 GATCTGGTGAAGTATGGTTTGGCTGATGTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAAAGCAGT 1184
|.|||.|
Sbjct 1 -------------------------------------------------------------------ATGCACT 7
Query 1185 CAATGAAGTTTTTTC---CTGTATCAAATATCTGGCAATTTAC-AATTG----CCCTCATCTACACAACCCATA 1250
..||.|| |||| |.||| || |.||..||| ||.|| |.|||.|||.|.|||
Sbjct 8 TGATAAA----TTTCAAACAGTA-CA--------GAAAGGTACAAAATGAAAACTCTCCTCTTCTCAA------ 62
Query 1251 CAATTGGATCTCAGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGC 1324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 ------------AGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGC 124
Query 1325 TGGACTCTTTTGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAA 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 TGGACTCTTTTGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAA 198
Query 1399 CCACCCAAGGGTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGCAA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 CCACCCAAGGGTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGCAA 272
Query 1473 CCAGAACTCCAACAATGACGATAATAATGCCCAGAATAACAATGCCAACATCCACGACAACAATCACCATCATC 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 CCAGAACTCCAACAATGACGATAATAATGCCCAGAATAACAATGCCAACATCCACGACAACAATCACCATCATC 346
Query 1547 CAGATGACTCAGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGAGCAGCAGTTTGCAGCTGACGCA 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 CAGATGACTCAGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGAGCAGCAGTTTGCAGCTGACGCA 420
Query 1621 TTAAATGAGATGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAATAATACTCCAGCTCA 1694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTAAATGAGATGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAATAATACTCCAGCTCA 494
Query 1695 CAGCCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTCTTCAGCGTGTAGTAAAAC 1768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 CAGCCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTCTTCAGCGTGTAGTAAAAC 568
Query 1769 CAACCTCAATTACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCTAGAACTCCAAGAAGTCTGGATT 1842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 CAACCTCAATTACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCTAGAACTCCAAGAAGTCTGGATT 642
Query 1843 CCTAAGAACGGTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGAGAGTCAGTGCAGTCCAGAGAATT--- 1913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CCTAAGAACGGTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGAGAGTCAGTGCAGTCCAGAGAATTGTC 716
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 717 AGTAAGTGGAAAAGGCAAGACTCCACTTCGAAAGAGGTACAACTCCCATCAGATGGGCCAGTCGAAGCAGTTTC 790
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 791 CCCTCGAGGAAAGCAGCTGTGAGAAAGGCTGTCAGGTCACCAGTGAGCAGATCAAAGCCGATATGAAAGCAGCT 864
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 865 AGGGATATTCCTGAAAAGAAAAAAAACAAGGATGTTTATCCCAGCTGCAGCAGCACCACCGCCAGCACAGTGGG 938
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 939 AAACTCCAGCTCACACAACACTGCTTCTCAAAGCCCCGACTTTGTAAGGACGGTGAACAGCGGCGGCTCTTCCG 1012
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1013 AGCCTAGCCCTACAGAAGTGGATGTGTCCAGGCAGTGTGCCTGCTCCCCCGGTGGGTCAGAGGACTCTGAGGCC 1086
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1087 ATGGAGGAGGGAGATGCAGAGAGTTCTGTCTGCCCCAGATGCTGCTGTCACAGGCCCCAGGAATCCCAAAGGAG 1160
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1161 AACTAGCAGGTGTTCTGATGAGGAACGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCCCGGATGGTACGA 1234
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1235 GATCCGCCTTTTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGATGAGAGGACTAATGGG 1308
Query 1914 -------------------------------------------------------------------------- 1913
Sbjct 1309 AGTGGCTCTGGGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGACGTGCAGTCTAATGA 1382
Query 1914 ------------------------------------------------------------------GTCAGAAG 1921
||||||||
Sbjct 1383 AGACTACCCTCGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACTGCTGGTATCTGAGTCAGAAG 1456
Query 1922 TAGCCAAAACAAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACTAGTACAAGTGATCCT 1995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1457 TAGCCAAAACAAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACTAGTACAAGTGATCCT 1530
Query 1996 GTGATCGAGGATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGTCACTATGACCAATTG 2069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1531 GTGATCGAGGATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGTCACTATGACCAATTG 1604
Query 2070 TGGAATCACAGATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCATGCTACCAGGTGCAGGGTACTAA 2143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 TGGAATCACAGATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCATGCTACCAGGTGCAGGGTACTAA 1678
Query 2144 AACATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAACTGAACATGGAT 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 AACATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAACTGAACATGGAT 1752
Query 2218 CAGGTACTAGACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACGCCCAATGCAGCAGGT 2291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 CAGGTACTAGACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACGCCCAATGCAGCAGGT 1826
Query 2292 GGACACTCTAACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCATGAATTCA 2365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1827 GGACACTCTAACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCATGAATTCA 1900
Query 2366 GTAACCCTCCCAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAACATCAATCAAGAG 2439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1901 GTAACCCTCCCAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAACATCAATCAAGAG 1974
Query 2440 CTCATTAAATATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCCCAAGTACCCCTG 2513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1975 CTCATTAAATATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCCCAAGTACCCCTG 2048
Query 2514 GGGGAGAGAAATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTGACTTCCCTTGGC 2587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 GGGGAGAGAAATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTGACTTCCCTTGGC 2122
Query 2588 TGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAAGAAAGCACTATC 2661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2123 TGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAAGAAAGCACTATC 2196
Query 2662 TATGCTCCTAGAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGAAATTTCAGAGAT 2735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2197 TATGCTCCTAGAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGAAATTTCAGAGAT 2270
Query 2736 GCGTCAGATGAAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATGTCAATGGAGAGC 2809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2271 GCGTCAGATGAAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATGTCAATGGAGAGC 2344
Query 2810 CAGTTGAAGATGACTACATT 2829
||||||||||||||||||||
Sbjct 2345 CAGTTGAAGATGACTACATT 2364
