Nucleotide Global Alignment

Description

Query:
TRCN0000471001
Subject:
XM_017317780.1
Aligned Length:
3587
Identities:
1393
Gaps:
2002

Alignment

Query    1  ATGGGGCCACGAAAGAAAAGTGTGAAAACATGTATCATGAATAATGAAATTCCAGAAGAAATGACAGCAGATGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AACAAAGGACTATATGAATCAACTTTCACATGAAGTACTTTGCCATATTTTTAGGTACCTCCCTCTGCAGGATA  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TCATGTGTATGGAATGTCTTTCCCGGAAGCTAAAGGAAGCAGTGACCCTATATCTGCGAGTTGTGAGAGTTGTA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GATCTCTGTGCAGGGCGGTGGTGGGAATACATGCCAAGTGGCTTTACAGATGCCAGTTTTCTAACACTATTAAA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  GAAGATGCCAGATGTTGAACAGCTATATGGCCTTCACCCTCGATACCTTGAGAGGCGAAGAGTAAGGGGCCATG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  AGGCTTTTAGCATTCCAGGAGTCCTAGAAGCTTTGCAGGCATGCCCAAACTTAGTGGGTGTGGAAACTTCTCAT  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  TTGGAGTTGGTAGAATCCATTTGGACATATATGCCCCATGTTCATATTTTGGGGAAATTTCGTAATCGTAATGG  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  AGCTTTTCCAATTCCTCCTGAAAATAAACTGAAAATTCCTATAGGAGCCAAAATTCAAACTTTACATTTAGTTG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  GGGTGAATGTTCCTGAAATTCCTTGTATCCCAATGCTAAGGCACCTTTATATGAAGTGGGTAAGACTCACTAAA  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  CCACAGCCATTTAAAGACTTCCTTTGTATCAGCTTAAGAACTTTCGTCATGAGGAACTGTGCAGGACCCACAAA  740
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  741  TTCCTTGAAATATGTCCCTTTAGTAACAGGCTTAGCCTCTGCCCGAAACTTGGAACACTTAGAAATGGTTCGAG  814
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  815  TTCCTTTCCTTGGAGGTCTTATCCAACATGTTGTTGAAGACAGTTGGAGATCAGGTGGTTTTAGAAATTTGCAC  888
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  889  ACTATTGTTCTGGGAGCTTGCAAAAATGCTCTTGAAGTAGATCTTGGTTACCTCATCATTACTGCTGCCCGTAG  962
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  963  GTTACATGAAGTTCGGATCCAGCCTTCCCTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAGTTGG  1036
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1037  AGTTTCCCCAGTTTGAAACCCTTCATCTAGGATATGTAGATGAGTTTTTGCTACAGAGCAGAATGGCTAATGCG  1110
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query 1111  GATCTGGTGAAGTATGGTTTGGCTGATGTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAAAGCAGT  1184
                                                                           |||||||    
Sbjct    1  ---------------------------------------------------------------ATGAAAG----  7

Query 1185  CAATGAAGTTTTTTCCTGTATCAAATATCTGGCAATTTACAATTGCCCTCATCTACACAACCCATACAATTGGA  1258
                                       |||                ||||.||| ||                 
Sbjct    8  ---------------------------TCT----------------CCTCTTCT-CA-----------------  20

Query 1259  TCTCAGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGCTGGACTCT  1332
                |||||||||.||.||||..|||.||||||||||||||||.||.|||||||||||||||||||||||.|||
Sbjct   21  ----AGACCACTCGAGGTGGATGCGACTGGTTGATATCAACCTCGTGCGGTGCCATGCTTTGAAGCTGGATTCT  90

Query 1333  TTTGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAACCACCCAA  1406
            ||||||||||||.||||||||||.||||||||.||.||||||||.|||||.||||||||.|||||.||||||||
Sbjct   91  TTTGGCCAGTTTGTTGAATTATTGCCCAGCCTGGAATTTATTTCTCTGGACCAGATGTTCCGTGAGCCACCCAA  164

Query 1407  GGGTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGCAACCAGAACT  1480
            |||.||||||||||||||||||||||||||.||.||||||||.|||||.|||||.|||||.|||||||||||.|
Sbjct  165  GGGCTGTGCTCGAGTTGGTCTGAGTGCAGGAACTGGAATTGGGGTTTCCTCAGCGCTTGTCAGCAACCAGAATT  238

Query 1481  CCAACAATGAC---GATAATAATGC-CCAGAATAACAATGCCAACATCCACGACAACAATCACCATCATCCAGA  1550
            |||||||||||   ||.|||||||| ||| ||||||||.||||||.||||.||.||||||||||||||.|||||
Sbjct  239  CCAACAATGACAATGACAATAATGCTCCA-AATAACAACGCCAACCTCCATGATAACAATCACCATCACCCAGA  311

Query 1551  TGACTCAGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGA-GCAGCAGTTTGCAGCTGACGCATTA  1623
            |||.||.||.||.||.|||||||||||.|.|||.||.||..||||||| ||| ||.||||||||.||.||.||.
Sbjct  312  TGATTCGGATGACGACAATGACTTTCGTCCAGACCTACAAGCAGGAGAGGCA-CAATTTGCAGCCGATGCGTTG  384

Query 1624  AATGAGATGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAATAATACTCCAGCTCACAG  1697
            |||||||||||||||||.|||||.|||||||||||..||||.|||||||||||||||..||..||||||||||.
Sbjct  385  AATGAGATGGAAGACATGGTCCAGGAAGATGGAGAACTGGTAGCCGAGAGTGGAAATGGTATGCCAGCTCACAA  458

Query 1698  CCAGGCAATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTCTTCAGCGTGTAGTAAAACCAA  1771
            .|.||.|.||.||||||||||||.|||||||||||||||||||||.||||||||.||.||.||.||||||||.|
Sbjct  459  TCGGGAAGTTCTTCCTGTGGATGCTGATGAGGAACAAGCAGGACCTAGTGGTCTACAACGCGTGGTAAAACCTA  532

Query 1772  CCTCAATTACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCTAGAACTCCAAGAAGTCTGGATTCCT  1845
            |..|||||.|||.|||.|||||||||||.||||||||||||||||||.||||||||||||||||||||..||||
Sbjct  533  CACCAATTGCTGATCACGATTCAGAGAGCGATGATGAAGAAGATAGTTTAGAACTCCAAGAAGTCTGGGCTCCT  606

Query 1846  AAGAACGGTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGAGAGTCAGTGCAGTCCAGAGAA--------  1911
            |||||.||.||.|||||||||||.||.||.||||||||.||||||||.||||..||||||||.|||        
Sbjct  607  AAGAATGGCACCCGGCGTTACTCAGAGCGGGAAGAAAAGACTGGAGACTCAGGACAGTCCAGGGAAACGGCAGC  680

Query 1912  --------------------------TT----------------------------------------------  1913
                                      ||                                              
Sbjct  681  AGTAAGTGGGAAAGGCAAGACTCCACTTCGAAAGAGGTGCAACAACTCCCACCAGACGGGCCAGGCGAAGCCGT  754

Query 1914  --------------------------------------------------------------------------  1913
                                                                                      
Sbjct  755  TTCCCCTGGAGGAGAGCAGCTGTGAGAAAGGCTGTCAGGTGACCAGTGAGCAGATCAAAGCCGATATGAAAGCA  828

Query 1914  --------------------------------------------------------------------------  1913
                                                                                      
Sbjct  829  GCTAGGGATGTTTCTGAAAAGAAAAAATCCAAGGATGTCTATCCCAGCTGCAGCAGCAGCAGCAGCAGCACAGC  902

Query 1914  --------------------------------------------------------------------------  1913
                                                                                      
Sbjct  903  CGCCAGCACAGCGGGAAACGCCAGCTCACCCAGCACTGCTTCCCAGAGCCCGGACTTTGCAAGGACGGTGACCA  976

Query 1914  --------------------------------------------------------------------------  1913
                                                                                      
Sbjct  977  GCAGCGGCTCTTCCGAGCCGAGCCCTCCAGAAGTAGATGTATCCAGGCAGTGTGTCTGCTCCCCTGGTGGGTCA  1050

Query 1914  --------------------------------------------------------------------------  1913
                                                                                      
Sbjct 1051  GAGGACTCTGAGGCCATGGAGGAGGGAGATGCAGAGAGCTCTGTCTGCCCCAGATGCTGCTGTCTCAGGCCCCA  1124

Query 1914  --------------------------------------------------------------------------  1913
                                                                                      
Sbjct 1125  GGAGTCTCAAAGGAGAACTGGCAGGTGTTCTGATGAGGAGCGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATG  1198

Query 1914  --------------------------------------------------------------------------  1913
                                                                                      
Sbjct 1199  GCGCGGATGGTACGAGATCCGCCTTTTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGAT  1272

Query 1914  --------------------------------------------------------------------------  1913
                                                                                      
Sbjct 1273  GAGAGGACTAATGGGAGTGGCTGTGGGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGA  1346

Query 1914  --------------------------------------------------------------------------  1913
                                                                                      
Sbjct 1347  CGTGCAGTCTAATGAAGACTATCCTCGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACCGCTGA  1420

Query 1914  -------GTCAGAAGTAGCCAAAACAAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACT  1980
                   |||||||||.|||||||||||||||.|.||.|||||||||||.|||||.||.||||||||.||.||.
Sbjct 1421  TATCTGAGTCAGAAGTTGCCAAAACAAAGCCATGCCATGCCATGAAACGAAAGCGAACTGCAGATAAGTCTACC  1494

Query 1981  AGTACAAGTGATCCTGTGATCGAGGATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGT  2054
            ||.||.|||||.||||||||.||.||||||||.||.|||||||||||||||||||||||.||||||||||||||
Sbjct 1495  AGCACCAGTGACCCTGTGATTGAAGATGACCACGTACAGGTTCTTGTATTAAAATCCAAAAATCTTGTTGGAGT  1568

Query 2055  CACTATGACCAATTGTGGAATCACAGATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCATGCTACCA  2128
            |||.|||||||||||||||||||||||||||||.||.||||||||.||.|||||||||||||||||||||||||
Sbjct 1569  CACAATGACCAATTGTGGAATCACAGATCTAGTACTGAAAGACTGCCCCAAGATGATGTTCATCCATGCTACCA  1642

Query 2129  GGTGCAGGGTACTAAAACATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAG  2202
            |||||||||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643  GGTGCAGGGTACTGAAGCATTTAAAGGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAG  1716

Query 2203  AAACTGAACATGGATCAGGTACTAGACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACG  2276
            |||||.||.|||||.||||||||||||||.|||||.||.|||||.||.|||||.|||||.|||||.|||||.||
Sbjct 1717  AAACTAAATATGGACCAGGTACTAGACCAAATACTGAGGATGCCTCCGGAGAGGAACCGGATCATCTACCTGCG  1790

Query 2277  CCCAATGCAGCAGGTGGACACTCTAACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTA  2350
            |||||||||||||||.|||||.||||||.|||||||||||||.||.||.||.||||||||||||||||||||.|
Sbjct 1791  CCCAATGCAGCAGGTAGACACACTAACTCTGGAGCAGAAGCTCTTCAGCGGGCCCTACCCCTATCACATCTGCA  1864

Query 2351  TTATCCATGAATTCAGTAACCCTCCCAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCA  2424
            |.|||||.||.|||||.||.||||||||.||.|||||.|||||||||||.||||..|||||||||||.|||||.
Sbjct 1865  TCATCCACGAGTTCAGCAATCCTCCCAACGTGCGGAACAAGGTGCGCATCCGCAATTGGATGGACACGATAGCC  1938

Query 2425  AACATCAATCAAGAGCTCATTAAATATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATA  2498
            ||||||||||||||||||||||||||.||||||||||..|||||||||||.|.||||||.||.||||||||.||
Sbjct 1939  AACATCAATCAAGAGCTCATTAAATACGAATTCTTCCTGGAAGCCACTCGGACTGAAGAGGATTTAAAGAAGTA  2012

Query 2499  CCCCAAGTACCCCTGGGGGAGAGAAATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTT  2572
            |||.|||||.||||||||||||||||||||.||||||||.||||||||.||||||||.||.|||||||||||||
Sbjct 2013  CCCTAAGTATCCCTGGGGGAGAGAAATCTACACTTTAGAGGGTGTTGTAGATGGAGCGCCGTATTCCATGATTT  2086

Query 2573  CTGACTTCCCTTGGCTGAGGTCATTACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGAT  2646
            |.|||||||||||||||||||||.|.||..|.|||||||||||||||||.||..||||.||.||||||||.|||
Sbjct 2087  CCGACTTCCCTTGGCTGAGGTCACTGCGGACCGCAGAGCCCAACAGCTTTGCCAGATATGATTTTGAAGATGAT  2160

Query 2647  GAAGAAAGCACTATCTATGCTCCTAGAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGA  2720
            |||||.|||||.||||||||||||.||||.|||||.|||.|||||||||||||.||||||||.|||||||||||
Sbjct 2161  GAAGAGAGCACCATCTATGCTCCTCGAAGAAAAGGGCAGTTGTCTGCAGACATTTGTATGGAGACAATAGGAGA  2234

Query 2721  GGAAATTTCAGAGATGCGTCAGATGAAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTG  2794
            |||.||.|||||||||||.||||||||||.|||..||||||||||||||||.||.||||||||||||||.||||
Sbjct 2235  GGAGATCTCAGAGATGCGCCAGATGAAGAGGGGCATATTTCAGCGAGTAGTAGCGATTTTTATCCACTACTGTG  2308

Query 2795  ATGTCAATGGAGAGCCAGTTGAAGATGACTACATT  2829
            |||||||||||||||||||||||||.|||||||||
Sbjct 2309  ATGTCAATGGAGAGCCAGTTGAAGACGACTACATT  2343

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