Nucleotide Global Alignment
Description
- Query:
- TRCN0000471995
- Subject:
- XR_001778840.1
- Aligned Length:
- 3362
- Identities:
- 845
- Gaps:
- 2399
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGTAGGCGGTGGCTGCTGGCAGTGTGGGGCGGCCAGGACTGATCGGCCGGGTCCCCGGGGTACTACCCACGCCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTGCAATAGCGACAACTCCATACCGGGGACTCCGGGACTGGCGGGACCCGAGAGGCGACTCTCCCAGATCCCG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTTTCCCCGCACTGAGCGACCGTGCCCAGTGTCCTGCAGAGGACGCTCGCCGGCGCGTTCTCACCAATGTCAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTGTCACCCCTTTGCCTAGCTCCACCCCCCGGGCTGGAAAACCTGGCAGCAGACGGTCTACGGTCCCCCGGGC 296
Query 1 --------------------------------------------------------ATGCAGCCCTCAGGCTGG 18
|||||||.|||...|.||
Sbjct 297 CCAGGCCCCGCGCTGCCCCTCCTTGTCTCCTCCCGGCCACGCGCTACGAGCCCGGGATGCAGCTCTCCAACAGG 370
Query 19 GCGGCCGCCAGGGAGGCGGCGGGCCGCGACATGCTGGCCGCCGACCTCCGGTGCAGCCTCTTCGCCTCGGCCCT 92
||.||.|||||||||||.|||.||||||||.|||||||.||.||||||||.||||||||||||||||||||.||
Sbjct 371 GCAGCAGCCAGGGAGGCAGCGAGCCGCGACGTGCTGGCTGCGGACCTCCGCTGCAGCCTCTTCGCCTCGGCGCT 444
Query 93 GCAGAGCTACAAGCGCGACTCGGTGCTGCGGCCCTTCCCCGCGTCCTACGCCCGCGGCGACTGTAAGGACTTTG 166
|||||||||||||||.||||||||||||||||||||||||||.||||||||||||..|||||||||||||||.|
Sbjct 445 GCAGAGCTACAAGCGGGACTCGGTGCTGCGGCCCTTCCCCGCCTCCTACGCCCGCCACGACTGTAAGGACTTCG 518
Query 167 AAGCCCTGCTTGCAGATGCCAGCAAGTTACCTAACCTGAAAGAACTTCTCCAGTCCTCCGGAGACAACCACAAA 240
|.|||||||||||.||..|..|||.||||||.|||.||||.||||||||.|||||.|||.||||||...|||||
Sbjct 519 AGGCCCTGCTTGCGGACACTGGCAGGTTACCCAACTTGAAGGAACTTCTACAGTCTTCCAGAGACACAGACAAA 592
Query 241 CGGGCCTGGGACCTGGTGAGCTGGATTTTATCCTCAAAGGTCCTGACAATCCACAGTGCAGGGAAGGCAGAGTT 314
|.|||||||||||||||||||||||||||||||||.|||.|||||||||||||||||||...||||||||||||
Sbjct 593 CAGGCCTGGGACCTGGTGAGCTGGATTTTATCCTCCAAGATCCTGACAATCCACAGTGCCAAGAAGGCAGAGTT 666
Query 315 TGAAAAGATCCAAAAGCTGACTGGGGCTCCTCACACGCCTGTTCCTGCACCGGACTTCCTGTTTGAAATTGAGT 388
||||||||||||..|||||||.||.||.||||||||.|||||.||..|.|||||.|||||.|||||||||||||
Sbjct 667 TGAAAAGATCCAGCAGCTGACCGGCGCCCCTCACACACCTGTCCCCACCCCGGATTTCCTATTTGAAATTGAGT 740
Query 389 ACTTTGACCCAGCCAACGCCAAATTTTATGAGACCAAAGGAGAACGAGACCTAATCTATGCATTTCATGGTAGC 462
||||||||||.||||||.|||.|||||||||||||||||||||||||||||||||||||||.||.|||||||||
Sbjct 741 ACTTTGACCCGGCCAACTCCAGATTTTATGAGACCAAAGGAGAACGAGACCTAATCTATGCCTTCCATGGTAGC 814
Query 463 CGCCTAGAAAACTTCCATTCCATTATCCACAATGGCCTGCACTGCCATCTGAACAAGACATCCTTGTTCGGAGA 536
||||||||.||||||||.|||||.||.||||||||||||||||||||.|||||||||||.||..||||.|||||
Sbjct 815 CGCCTAGAGAACTTCCACTCCATCATTCACAATGGCCTGCACTGCCACCTGAACAAGACTTCTCTGTTTGGAGA 888
Query 537 GGGGACCTACCTCACCAGTGACTTGAGCCTGGCCCTCATATACAGCCCCCATGGCCATGGGTGGCAGCACAGCC 610
|||||||||||||||.|||||||||||||||||||||||.||.||.||.||||||||.||||||||.||.||||
Sbjct 889 GGGGACCTACCTCACAAGTGACTTGAGCCTGGCCCTCATTTATAGTCCTCATGGCCACGGGTGGCAACATAGCC 962
Query 611 TCCTCGGCCCCATCCTTAGCTGTGTGGCCGTGTGTGAGGTCATTGACCATCCGGACGTCAAGTGCCAAACCAAG 684
|.||.|||||.|||||.|||||.||.||.||||||||||||||.||.|||||.||.|||||||||||||.||||
Sbjct 963 TTCTTGGCCCGATCCTGAGCTGCGTAGCTGTGTGTGAGGTCATCGATCATCCAGATGTCAAGTGCCAAATCAAG 1036
Query 685 AAGAAG-------------------------------------------------------------------- 690
||||||
Sbjct 1037 AAGAAGGGACAGAGTCTCACTATGAAGTAGCTCCCTAGCTGTCCTGGAACTCACAGTGCAGACCAGGCTGGCCT 1110
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1111 TGAGCTCACAGGAAATCAGCCTGTCTCAGGGGCTGAGGGTAAGAGTGCTAGGATCAAAGGTGTATGCCACGAGG 1184
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1185 CCTGCTGGAAGTGAATGTTCTGAGAGCTTACTCTAGCGGGGCTTATTCAGAAGGCCTCCTGGGCCCAGGGGAGG 1258
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1259 TAGCCCAGGCAGTGGAGTGTGCACCTGGCAGGTATGAGCCCCTGAGGTCCCTCCTCAGCACAGCATCCGCCTGC 1332
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1333 TAAGATGCCTGTGAGCCCAGCACTCAGAAGGTGGAGACAGGAGGATCAGAAGTTCATGGTCATCCTTAGTTAGC 1406
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1407 TGTTTAATTCAGGTACATGAGACTTGTCAAAAGATAGATGGATGGATGGAAGAATGGACGAACGGATGGATGGA 1480
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1481 TGGGCAGGTGGGCAGGCAGGCAGGCTTCCATCTTTGCTCCCTGGTAAGTCCTTGTCTTGGTCCTAGGATGTGTG 1554
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1555 ATCCTGATCTGCTATTTCAGCCTTCAGCTTGCTTCCACCTTCTGCTTTCTCCATTAGATGGTTTTTATTTTCTT 1628
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1629 CTCTTATATTTTCACATTCTTTTTCCCATCTATCTTTCTCTGCCTGCCAGAGACTCCTGCCGTCTGTGCTGGGT 1702
Query 691 -------------------------------------------------------------------------- 690
Sbjct 1703 TCACATATGAACACAGGTACATACCTCAGCCTGCTGACCTTCTGTGCCTCAGGACACATTTCTATTCCTAATTT 1776
Query 691 ----------------------------------------------------------------------GATT 694
||||
Sbjct 1777 GCTTAGTTTGTTATTGTGTTTCCCGTCCCCACCCACCACCTGACAAAGTATGCTCTACCTTCCTTTTTCAGATT 1850
Query 695 CCAAGGAGATAGATCGCAGACGAGCGAGAATCAAACATAGTGAAGGGGGAGACATCCCTCCCAAGTACTTCGTG 768
|||||||.|||||.|||||.|||||.||||||||.||.||.||.||||||||.|||||.||.||||||||.||.
Sbjct 1851 CCAAGGAAATAGACCGCAGCCGAGCAAGAATCAAGCACAGCGAGGGGGGAGAGATCCCCCCTAAGTACTTTGTA 1924
Query 769 GTCACCAATAACCAGCTGCTGCGAGTGAAGTACCTCCTGGTGTATTCACAGAAGCCACCCAAGAGCAGGGCTTC 842
|||||||||||||||||.|||||.|||||||||||.|||||||||||.|||||||..|||||| |||||.||
Sbjct 1925 GTCACCAATAACCAGCTTCTGCGGGTGAAGTACCTGCTGGTGTATTCCCAGAAGCAGCCCAAG---AGGGCCTC 1995
Query 843 GAGCCAGCTCTCCTGGTTTTCCAGCCATTGGTTTACCG---TCATGATATCCCTGTATCTGCTGCTGCTGCTCA 913
||||||||||||||||||.||||||||.||||| || |||||||.|||||||||||||||||||||||||
Sbjct 1996 GAGCCAGCTCTCCTGGTTGTCCAGCCACTGGTT---CGTGATCATGATGTCCCTGTATCTGCTGCTGCTGCTCA 2066
Query 914 TAGTGAGTGTCATCAACTCCTCTGCTTTCCAACACTTTTGGAATCGTGCGAAAAGA------------------ 969
|.||||||||||.|||||||||||..|||||.|||||.||||||||||.|||.|||
Sbjct 2067 TCGTGAGTGTCACCAACTCCTCTGTGTTCCACCACTTCTGGAATCGTGTGAAGAGATGATCCCAGGTGCTTGGA 2140
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2141 GTGGGGCCACTCACCGTGTGCCTTATGGAAACTTGTCCTCTACCTCCTGTGTGTCACATCCGGTCAGGTCGAGT 2214
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2215 CTGGGGACCATTTGCAGGGGTGCACAGGACGAGTTTTATATGCCATAAGTGTACTGATTGCCTTTGTTGATGTG 2288
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2289 CCCAGACACAATCCAGTCAGTGGGGGATCCCTGGCCCCTCACTTGTCAGTTTCAGGGGTGTCCTACCCTCTGCT 2362
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2363 TCCTCCTAAATAGTCTAGGGAGGTGGCTCTTCAGCCAGAGCCAAAGGAAAAAGTCCTGCTGCATTTAAAAGCAA 2436
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2437 AGTGTCCAAGCTGTCCGAGGTGTGTTTACAATTGCCCAGATGGAGGCCGGCCCGGATGCTAATGCCTTTTGGAA 2510
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2511 GACAGAATGTGTGCAACGGGAACAATAAATCATTAGGCGACTGCCTTGTTTTGACTCAAGACACCCAAGAGGGA 2584
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2585 CTGTCGTGTTTCTCATAAAAATATCAGTGGGATCGTTTGGGAATTCCATCGGCTTTAGTCTGCCGGTGCAAAAC 2658
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2659 ATTTTAACAGTTTTCTCAGATCAACAACCGTCTCTGCCACAGCTGTACCCCCTCCCTCCTTAACCACACAAGAG 2732
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2733 GAGGAGCCACAGGCGGGATAACAAAATGCAGATTTAACAACTAGCAACTCTGTCATCTTTTTCTAAAAATGACC 2806
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2807 AACTGCTGATTACAGCTCAAACGGAACCAAATGTTTGCGTTTCTGTTTTTGTTGTCATTTATTTGACAAGTTAG 2880
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2881 CCTCTATGAGCCAAATAGAGGGGGAGATGTGTGAACCTGGAGCACCGAGTGGCTACATCCACAGCCTCTTTCTG 2954
Query 970 -------------------------------------------------------------------------- 969
Sbjct 2955 GTGTTGTTATGGAGAAGGGTCCAAGCCATAGGCTCACCAGGGTCCTCATTCCCACAAAGCTGCCTTGATACCCA 3028
Query 970 -------------------------------------------------------------------------- 969
Sbjct 3029 ACACTCTAGGCTCTCAGGGGCCCGGCAGCCTTCACAGCAGAGGCCTGCCTCAGTGGGCCACGGGTCTCCATGGG 3102
Query 970 -------------------------------------------------------------------------- 969
Sbjct 3103 CTGAGCCTCCATCCGAGAAGCCTGAGGTTGAGTGGTAAGCAGAGGCCCAGCCATCCTTGCTGTGGTGTTTATCC 3176
Query 970 -------------------------------------------------------------------------- 969
Sbjct 3177 CTCCTTCCTGCCAGGTTTCAGCGGCAGAAGACCCCTGTCTGCTGGGAATGGAGTTTCCATAGAGGAGGAGAAAA 3250
Query 970 -------------------------------------------------------------------------- 969
Sbjct 3251 TAATTTTTTTCCTATAATTTGTAAAGCTTGTGAAAAAGCCACTATCGTGATTTTTTAAATCAAGTAGTGGGACA 3324
Query 970 -------------------------------- 969
Sbjct 3325 TTTAAAAAACAATAAAGATATTTTCCTAAATA 3356
