Nucleotide Global Alignment
Description
- Query:
- TRCN0000472931
- Subject:
- XR_001782389.1
- Aligned Length:
- 5627
- Identities:
- 1257
- Gaps:
- 4214
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACTGTTTTCTCTCAGCTGAGCACCACCGGGCTCTTCAGCAGAGGGAAAGCAGAAGCTGCAGGAAGCCCTTACT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTCATGCTTCCTTTGTTCCATAATTAAATAGGCACGACCCCATTCAAAGACTCCATTACATCTTACAGGTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATGCTGTCATTGGTATCCCACTGTGGGGAGCCGAGGAAAGCTTGAATGAATGTGTAAAAAATGAAGTTCTGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGGCATGGTGGCGCATGCCTTTAATCCTAGCACTTGGGAGGAAGAGGCAGAGGCAGGTGGATTTCTGAGTTCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAAGAAACAAACAACAACAACAACAACAACAAAAAAAAAGAATGAAGTTCTGGGGGCTGGAGAGATGGCTCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGAAACCATATGGTGACTCACAACCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCATAATGAGATTTGACCCCCTCTTATGTATCTGAAGACAGCTACAGTACTCATGTACATAAACTAAATAAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTAAAAAAAAAATGAAGTTCTAAGTGAATGTGTGTAGTTGACATGGGTGCATCCATGTCAAGGGCTGAAGGCCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGACCCATGGGAGTGGCCGTGCCTTCCCTGTATGGGTCAGGCTTGGAACTGGTAAACGCTAAACCCTTCTTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGTCCAAGGAAGAGTGTTTTCAAATAATTGATGAGGACATACAAAAGCTAGCAATTGAAGCTTCTCCTCCCAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGACTGCAACTGGAGACTGCTCCACCTACACCTGCTGTGCACAACAGTGTGCTGAGATTTTAAGCTGTTGCATA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTAGATACACTCCACCAGAGCTGGCATAACCTACTTGGTGCCAGTTTTTCTGGACATTGTATCTGCATATCTGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTTTCTTTTTTCCCTAGGCACCACAGTCAGGTTTTAAAGACCGATGGCTACAGTAAGCAACACATACCCACTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TATTCAGATTTGAAAATATATAGTTACTTATTTAAGGTGGGTCTCTCTATGTAGTCTTCACTGGCCCGAAACTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATATGTAGACCAAGCTGACCTCCAACTCAGATTCATGTGCCTCTGCCTCTGGAGTGTTGGGATCCAAGGTGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CGCCACCTCATTTGGTCAAAGATTGTACATATTTTAAGTGTCTGCCTGACATTTTAGGAGTCTGTAGTTGGCAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CATCAGGCAAACACCTTAACTACTGGATCCCTTATCCCGTGGCCTGATTCTTTGTCTTGGTTCTGTTAGCATCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CATCCTCCTCTCACTTTTACTTCACTGTGGTTTCCTTTTATTCAAGAATATACTGCATTTGCTCATCCTAAACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTTACGTAATGCACTACCAACATCTGTACCCCAACCCCAAACTAACATCTTGGAAATAAAAGAAAGATCCGAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTGGAATACACAGTCACCTGACAGAAACCTTTTAAAATTCTCATGCCTTGAAATTACACAGATGGCAACACATT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAAACATGTGTCAAGGCAAGTCTCTGCAACCCTCCCTGACTGTCAGGATAGGATTGCAGTGGGTAAGCCACTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAATCACCCAGCAGACAGCTGTCAGAAATATCTTTCTGGTATGCAAACTAGAAGCATCATACTCTGCTTTTAAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GCCATCTCAGCTCTTGCTATTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTGGTCATAACAACCAGCTCTGAGGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGTTGTTGTTTTTTAATTTTAGCTCTTGTGATTTGATCCGAACAACCCCCACAAAGCTCATGTGTTAAAATGCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGGCGGCCAGCTGGAGGGGCCATTTAATGTCCAAATTGAGTTACTTTCTTCTATGTACCTGTTTCATTTTCAGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AACGGATGGAATCTTCTCCTCAACATCATTTTTGAGATTAAACCCCGACTAGTGCTTGGATATAGTGATGTATA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATGCTTATGCTTTTCCAGTCATTATATAAATTTCCCAATAAAATAGAGAATCACCCATTTTATTGCGCCGTCTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATTTTTCGCTCAGTATTAGGCCACATATTCAGCAGCTTTTCTCATTCCACACCTGCCCTCAGATGACACTTAAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCAGTCGCAATCTGTATCACTATCACTTTCCCCTCTTTAAAGATGCCAGTTCTGCCGCCGCCGCCCCTTCCGCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AATCCGTCCGGGTTTCGAATTACCCCGGGAAATAATGATCAGAGACAGCCAGGCTTAAGCATTCGGAGGCCACA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTTGAATTAATTAGATTCGGTGACTGGGAAGAAGGAACCGGAAGGCGGTGCCTGCACAGGGAGTGCCCGCTGAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGAAAGCCAAACCCAGCCCTGCCTTGCCAGGAGCTCGTCAACAACCCTTGCCAGAAAACCTTTGAATCGGAAGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCAGAGACCGGAAGTACAGCCCTCCTGGGTTATGAACAGCCAATCAGAAGTGAGATCCTTAGTATACAGGGCGG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAAAGAAGTGGTCCAGTTCCGGCCGCGGCCGCCGCCGCCGCCGCCGCCATCTGTCACCTCACCTCCGGCACCGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAGCGGGTTGCCCGTGCCCCGCCCGTGTCCTCGGCGGAGCCCTTTCTTCCTCTTGTCACCTCTCGACTCTGTTC 2664
Query 1 ----------------------ATGGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGACGGCAGCGGCCTGGG 52
|||||||||||.||||||.|.|||||||||||.|||.|.|||||.||.||||
Sbjct 2665 TCGTCTCTGCCTTCTTCCCGGAATGGATCTGGTCGGAGTGTCTTCGCCTGAGCCAGGGCCCGCAGCAGCTTGGG 2738
Query 53 GACCCAGCAAGTGTCCATGGGCTATTCCTCAAAATACAATATCTTGTTCTTTGGCTGATGTAATGAGTGAACAG 126
|||||||.|||||.||||||||||..||||||||.|||.||||.|||||..||.|.||.||.||||||||..||
Sbjct 2739 GACCCAGTAAGTGCCCATGGGCTACCCCTCAAAACACAGTATCCTGTTCACTGACCGAGGTGATGAGTGAGGAG 2812
Query 127 CTGGCCAAAGAATTGCAGTTAGAAGAAGAAGCTGCCGTTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATTTAT 200
|||||.|||||..|||||||.|||||||||||.||.|.|||.||||||||||.||||||||||||||||||.||
Sbjct 2813 CTGGCTAAAGAGCTGCAGTTGGAAGAAGAAGCGGCTGCTTTCCCTGAAGTTGTTGTTGCTGAAGGACCATTCAT 2886
Query 201 TACTGGAGAAAACATTGATACTTCCAGTGACCTTATGCTGGCTCAGATGCTACAGATGGAATATGACAGAGAAT 274
|.||||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||.|||||||||||
Sbjct 2887 TTCTGGAGAAAACATTGACACTTCCAGTGACCTAATGCTGGCTCAGATGCTACAGATGGAATTTGACAGAGAAT 2960
Query 275 ATGATGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAAAGTTTCCATTTCCTTTGAAAATTAT 348
||||||||||||||||||||||.|||||.||.||||||||.||||||||||||||||||||.||||||||.|||
Sbjct 2961 ATGATGCACAGCTTAGGCGTGAGGAAAAGAAGTTCAATGGTGATAGCAAAGTTTCCATTTCGTTTGAAAACTAT 3034
Query 349 CGAAAAGTGCATCCTTATGAAGACAGCGATAGCTCTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGATCC 422
||.|||||.|||||||.|||||||||.||.|||||||||||.|||||||||||||||||.|||||.||.|||||
Sbjct 3035 CGCAAAGTTCATCCTTTTGAAGACAGTGACAGCTCTGAAGACGAGGTTGACTGGCAGGACACTCGAGACGATCC 3108
Query 423 CTACAGACCAGCAAAACCGGTTCCCACTCCTAAAAAGGGCTTTATTGGAAAAGGAAAAGATATCACCACCAAAC 496
|||||||||||||||.||..||||.|||||.||||||||.||||||||||||||||||||.|||||||||||.|
Sbjct 3109 CTACAGACCAGCAAAGCCAATTCCTACTCCCAAAAAGGGTTTTATTGGAAAAGGAAAAGACATCACCACCAAGC 3182
Query 497 ATGATGAAGTAGTATGTGGGAGAAAGAACACAGCAAGAATGGAAAATTTTGCACCTGAGTTTCAGGTAGGAGAT 570
|||||||||||||||||||.||.|||||||||||||||||||||||||||||.||||..|||||||||||.|||
Sbjct 3183 ATGATGAAGTAGTATGTGGAAGGAAGAACACAGCAAGAATGGAAAATTTTGCCCCTGGCTTTCAGGTAGGGGAT 3256
Query 571 GGAATTGGAATGGATTTAAAACTATCAAACCATGTTTTCAATGCTTTAAAACAACATGCCTACTCAGAAGAACG 644
|||||||||||||||||.||||||||.|||||.|||||.|||||.|||||||||||.||||||||||||||.||
Sbjct 3257 GGAATTGGAATGGATTTGAAACTATCCAACCACGTTTTTAATGCCTTAAAACAACACGCCTACTCAGAAGAGCG 3330
Query 645 TCGAAGTGCCCGCCTACATGAGAAAAAGGAGCATTCTACAGCAGAAAAAGCAGTTGATCCTAAGACACGTTTAC 718
|||.||||||||.|||||.|||||.|||||.||||||||.||.||||||||||||||||||||||||||.||||
Sbjct 3331 TCGGAGTGCCCGTCTACACGAGAAGAAGGAACATTCTACCGCTGAAAAAGCAGTTGATCCTAAGACACGCTTAC 3404
Query 719 TTATGTATAAAATGGTCAACTCTGGAATGTT-GAGACANTCACNGGNTGTTATTAGTNCAGNAAAGNNNTCTTG 791
||||||||||||||||||||||||||||||| ||||||.||||.||.|| |||||||.|||.||||...|| ||
Sbjct 3405 TTATGTATAAAATGGTCAACTCTGGAATGTTGGAGACAATCACTGGCTG-TATTAGTACAGGAAAGGAATC-TG 3476
Query 792 TTGTTCTTTCATGCATATGGAGGGAGCATGGAGGATGAAAAGGANGATTGTAAAGGTTATACTTACAGAATGTG 865
||| |||||||||||||||||||||||.||||||||||||||||.|||.||||| |.|||||..||||||||||
Sbjct 3477 TTG-TCTTTCATGCATATGGAGGGAGCCTGGAGGATGAAAAGGAAGATGGTAAA-GCTATACCAACAGAATGTG 3548
Query 866 CCATCAAGGTATTTAAAACAACCCTTAAATGATTTAAGAATCGTGACAAATATATTAAAGATGATTTCAGGTTT 939
||||
Sbjct 3549 CCAT---------------------------------------------------------------------- 3552
Query 940 AAAGATCGCTTCAGTAAACTAAATCCACGTAAGATCATCCGCATGTGGGCAGAAAAAGAAATGCACAATCTCGC 1013
|
Sbjct 3553 -------------------------------------------------------------------------C 3553
Query 1014 AAGAATGCAGAGAGCTGGAATTCCTTGTCCAACAGTTGTACTACTGAAGAAACACATTTTAGTTATGTCTTTTA 1087
|||||||||||..|||||||||||||||||||||||||||||.||.|||||.||||||||||||||||||||.|
Sbjct 3554 AAGAATGCAGAAGGCTGGAATTCCTTGTCCAACAGTTGTACTGCTTAAGAAGCACATTTTAGTTATGTCTTTCA 3627
Query 1088 TTGGCCATGATCAAGTTCCAGCCCCTAAATTAAAAGAAGTAAAGCTCAATAGTGAAGAAATGAAAGAAGCCTAC 1161
||||||||||||||||||||||||||||||||||||||||||||||.|.||.|||||||||||||||.||||||
Sbjct 3628 TTGGCCATGATCAAGTTCCAGCCCCTAAATTAAAAGAAGTAAAGCTTAGTAATGAAGAAATGAAAGATGCCTAC 3701
Query 1162 TATCAAACTCTTCATTTGATGCGGCAGTTATATCATGAATGTACGCTTGTCCATGCTGACCTCAGTGAGTATAA 1235
|||||.||||||||||||||||.|||.||||||.|.||||||||.|||||.||||||||||||||.||||||||
Sbjct 3702 TATCAGACTCTTCATTTGATGCAGCAATTATATAACGAATGTACCCTTGTGCATGCTGACCTCAGCGAGTATAA 3775
Query 1236 CATGCTGTGGCATGCTGGAAAGGTCTGGTTGATCGATGTCAGTCAGTCAGTAGAACCTACCCACCCTCACGGCC 1309
||||.|||||||||||||.||||||||||||||.||.|||||||||||.|||||.||.|||||.|||||.||||
Sbjct 3776 CATGTTGTGGCATGCTGGGAAGGTCTGGTTGATTGACGTCAGTCAGTCGGTAGAGCCAACCCATCCTCATGGCC 3849
Query 1310 TGGAGTTCTTGTTCCGGGACTGCAGGAATGTCTCGCAGTTTTTCCAGAAAGGAGGAGTCAAGGAAGCCCTTAGT 1383
||||||||||.|||||.|||||.||||||||.||.|||||.|||||||||||||||||.|.|||||||||.|.|
Sbjct 3850 TGGAGTTCTTATTCCGTGACTGTAGGAATGTTTCACAGTTCTTCCAGAAAGGAGGAGTAACGGAAGCCCTCAAT 3923
Query 1384 GAACGAGAACTCTTCAATGCTGTTTCAGGCTTAAACATCACAGCAGATAATGAAGCTGATTTTTTAGCTGAGAT 1457
|||||.||.||.||||||||||||||.|||.|.||||||.|.|||||.||||||||||||||.|||||||||||
Sbjct 3924 GAACGGGAGCTGTTCAATGCTGTTTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGCTGAGAT 3997
Query 1458 AGAAGCTTTGGAGAAAATGAATGAAGATCACGTTCAGAAGAATGGAAGGAAAGCTGCTTCATTTTTGAAAGATG 1531
|||||||||||||||.|||||||||||||||.||||||||||.||.||||||||.||.||.|||.|||||||||
Sbjct 3998 AGAAGCTTTGGAGAAGATGAATGAAGATCACATTCAGAAGAACGGGAGGAAAGCAGCCTCGTTTCTGAAAGATG 4071
Query 1532 ATGGAGACCCACC--------------ACTACTATA----TGATGAA--------------------------- 1560
|||||..|||||| ||||.||.| |||.|.|
Sbjct 4072 ATGGAAGCCCACCTGTGCTGTCTGCCGACTAGTACAGCGGTGACGGACGGCAGCTGCCATAGCCAGCGAGTGGA 4145
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4146 GGTGACCTGACATACCAAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGAT 4219
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4220 GTGTGCAATTTTTAACTCGGCATTGAAAGAATAAAATGTCACTACCTCTCATCTTACAAAAAGGATAATATAAT 4293
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4294 TCTTTAACAGGTATAGATGTGTAGCCACAGGAGTCTGGATTTTATACAACTCATGATCTGAAGTGTCTAGATGA 4367
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4368 GGATTTTCACATAGGCAGTGTTTCCAAATGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCT 4441
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4442 GCGCTCTGCTCCATTCCGCTCGCCTCCTGCTTTCCCTTGCGTCTTTGGGTGGATGTTGCTGTTTTAAATTAGCC 4515
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4516 CTTCCTAGCTGTTTGACCGTGAGCGTGGAGACCCCAGTGGGTACTAGAAATGGGCACTTGGCCTCAGTGGATGG 4589
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4590 TGGAAATGGACATAAGCATTTTATTGGTACACCGTAGATGTGTGGAATTCTACATTTCCGTCTCATAGCCAGGA 4663
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4664 GAGGTGACAGGTTTCTGAAAGATAAATATAAAAGGATTTCTTAACTACATTTTAAAACTTAACTTTCAGGTTTT 4737
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4738 CTTCATTAGGTTAAATGGTTGGTTATTTACATTTATAATGAGAATACAAAGTATCTGGAAGGGCAGAAGGTAAG 4811
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4812 AATGGGATCTGCTACATTTTAAGAAGGCAGTGAAACATTTCCGTTTACGTTTCCCCAAATTGTTCACATATTGA 4885
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4886 TTGCTAATCATTTGGAGAGAACTAGAACAAAGTAAGTGGAGCTGTTCAGTAAGTGGAAGACACAGCCTGAACAG 4959
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4960 CTCAAGTACTGAATTGACCGGCTAACTCGGCTGTGGGCCTCTGCCAGCGTCACACTGGCTGGACTCGGCCTGAG 5033
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5034 AAGGTGAGCCTTGTTCTGAAGACCAGTGCTTGCTTGCTCTCACCTCATTACCCCAGTTCCGGGAGTTACATTGG 5107
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5108 ATCCACTAACCAGCTTCACTTTCTGTCTGGTTATAAAGAGTAAATGTAATTTATAGTTGAAAAATTTTAACATT 5181
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5182 ATTTTAAATTGCCAAATATGTTCTTTCTCGACTATTTATTTTTGTTTCTGTTCTACTGCTTTAATTGCATTTCA 5255
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5256 GAGGAGTGAATTTAGGTGGCTCATCCCACTTATGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATTAT 5329
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5330 TGGCTGGACACAAATTGCAGAAAAGTCATTAGAAACAATCATTTAAAACTTTGTTTGCTTTCTTCACATATTCT 5403
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5404 TTCTCAAACCATTGCTTGGAGTGTGCTATGAACTTGCCTTTCAAGAAATTAAAAATGAAGAGATCATTTTAGAA 5477
Query 1561 --- 1560
Sbjct 5478 TTG 5480
