Nucleotide Global Alignment
Description
- Query:
- TRCN0000472931
- Subject:
- XR_001782390.1
- Aligned Length:
- 5759
- Identities:
- 1394
- Gaps:
- 4204
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GACTGTTTTCTCTCAGCTGAGCACCACCGGGCTCTTCAGCAGAGGGAAAGCAGAAGCTGCAGGAAGCCCTTACT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTCATGCTTCCTTTGTTCCATAATTAAATAGGCACGACCCCATTCAAAGACTCCATTACATCTTACAGGTCTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATGCTGTCATTGGTATCCCACTGTGGGGAGCCGAGGAAAGCTTGAATGAATGTGTAAAAAATGAAGTTCTGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGGGCATGGTGGCGCATGCCTTTAATCCTAGCACTTGGGAGGAAGAGGCAGAGGCAGGTGGATTTCTGAGTTCG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAAGAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAAAGAAACAAACAACAACAACAACAACAACAAAAAAAAAGAATGAAGTTCTGGGGGCTGGAGAGATGGCTCAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGAAACCATATGGTGACTCACAACCA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCATAATGAGATTTGACCCCCTCTTATGTATCTGAAGACAGCTACAGTACTCATGTACATAAACTAAATAAAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTAAAAAAAAAATGAAGTTCTAAGTGAATGTGTGTAGTTGACATGGGTGCATCCATGTCAAGGGCTGAAGGCCT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGGACCCATGGGAGTGGCCGTGCCTTCCCTGTATGGGTCAGGCTTGGAACTGGTAAACGCTAAACCCTTCTTGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGTCCAAGGAAGAGTGTTTTCAAATAATTGATGAGGACATACAAAAGCTAGCAATTGAAGCTTCTCCTCCCAGA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TGACTGCAACTGGAGACTGCTCCACCTACACCTGCTGTGCACAACAGTGTGCTGAGATTTTAAGCTGTTGCATA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTAGATACACTCCACCAGAGCTGGCATAACCTACTTGGTGCCAGTTTTTCTGGACATTGTATCTGCATATCTGT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CTTTTCTTTTTTCCCTAGGCACCACAGTCAGGTTTTAAAGACCGATGGCTACAGTAAGCAACACATACCCACTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TATTCAGATTTGAAAATATATAGTTACTTATTTAAGGTGGGTCTCTCTATGTAGTCTTCACTGGCCCGAAACTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATATGTAGACCAAGCTGACCTCCAACTCAGATTCATGTGCCTCTGCCTCTGGAGTGTTGGGATCCAAGGTGTG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CGCCACCTCATTTGGTCAAAGATTGTACATATTTTAAGTGTCTGCCTGACATTTTAGGAGTCTGTAGTTGGCAA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CATCAGGCAAACACCTTAACTACTGGATCCCTTATCCCGTGGCCTGATTCTTTGTCTTGGTTCTGTTAGCATCT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CATCCTCCTCTCACTTTTACTTCACTGTGGTTTCCTTTTATTCAAGAATATACTGCATTTGCTCATCCTAAACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCTTACGTAATGCACTACCAACATCTGTACCCCAACCCCAAACTAACATCTTGGAAATAAAAGAAAGATCCGAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TTGGAATACACAGTCACCTGACAGAAACCTTTTAAAATTCTCATGCCTTGAAATTACACAGATGGCAACACATT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CAAAACATGTGTCAAGGCAAGTCTCTGCAACCCTCCCTGACTGTCAGGATAGGATTGCAGTGGGTAAGCCACTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAATCACCCAGCAGACAGCTGTCAGAAATATCTTTCTGGTATGCAAACTAGAAGCATCATACTCTGCTTTTAAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GCCATCTCAGCTCTTGCTATTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTGGTCATAACAACCAGCTCTGAGGT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGTTGTTGTTTTTTAATTTTAGCTCTTGTGATTTGATCCGAACAACCCCCACAAAGCTCATGTGTTAAAATGCT 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGGCGGCCAGCTGGAGGGGCCATTTAATGTCCAAATTGAGTTACTTTCTTCTATGTACCTGTTTCATTTTCAGG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AACGGATGGAATCTTCTCCTCAACATCATTTTTGAGATTAAACCCCGACTAGTGCTTGGATATAGTGATGTATA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 ATGCTTATGCTTTTCCAGTCATTATATAAATTTCCCAATAAAATAGAGAATCACCCATTTTATTGCGCCGTCTT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 ATTTTTCGCTCAGTATTAGGCCACATATTCAGCAGCTTTTCTCATTCCACACCTGCCCTCAGATGACACTTAAC 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CCAGTCGCAATCTGTATCACTATCACTTTCCCCTCTTTAAAGATGCCAGTTCTGCCGCCGCCGCCCCTTCCGCC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 AATCCGTCCGGGTTTCGAATTACCCCGGGAAATAATGATCAGAGACAGCCAGGCTTAAGCATTCGGAGGCCACA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 CTTGAATTAATTAGATTCGGTGACTGGGAAGAAGGAACCGGAAGGCGGTGCCTGCACAGGGAGTGCCCGCTGAG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 AGAAAGCCAAACCCAGCCCTGCCTTGCCAGGAGCTCGTCAACAACCCTTGCCAGAAAACCTTTGAATCGGAAGC 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GCAGAGACCGGAAGTACAGCCCTCCTGGGTTATGAACAGCCAATCAGAAGTGAGATCCTTAGTATACAGGGCGG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 AAAAGAAGTGGTCCAGTTCCGGCCGCGGCCGCCGCCGCCGCCGCCGCCATCTGTCACCTCACCTCCGGCACCGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAGCGGGTTGCCCGTGCCCCGCCCGTGTCCTCGGCGGAGCCCTTTCTTCCTCTTGTCACCTCTCGACTCTGTTC 2664
Query 1 ----------------------ATGGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGACGGCAGCGGCCTGGG 52
|||||||||||.||||||.|.|||||||||||.|||.|.|||||.||.||||
Sbjct 2665 TCGTCTCTGCCTTCTTCCCGGAATGGATCTGGTCGGAGTGTCTTCGCCTGAGCCAGGGCCCGCAGCAGCTTGGG 2738
Query 53 GACCCAGCAAGTGTCCATGGGCTATTCCTCAAAATACAATATCTTGTTCTTTGGCTGATGTAATGAGTGAACAG 126
|||||||.|||||.||||||||||..||||||||.|||.||||.|||||..||.|.||.||.||||||||..||
Sbjct 2739 GACCCAGTAAGTGCCCATGGGCTACCCCTCAAAACACAGTATCCTGTTCACTGACCGAGGTGATGAGTGAGGAG 2812
Query 127 CTGGCCAAAGAATTGCAGTTAGAAGAAGAAGCTGCCGTTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATTTAT 200
|||||.|||||..|||||||.|||||||||||.||.|.|||.||||||||||.||||||||||||||||||.||
Sbjct 2813 CTGGCTAAAGAGCTGCAGTTGGAAGAAGAAGCGGCTGCTTTCCCTGAAGTTGTTGTTGCTGAAGGACCATTCAT 2886
Query 201 TACTGGAGAAAACATTGATACTTCCAGTGACCTTATGCTGGCTCAGATGCTACAGATGGAATATGACAGAGAAT 274
|.||||||||||||||||.||||||||||||||.||||||||||||||||||||||||||||.|||||||||||
Sbjct 2887 TTCTGGAGAAAACATTGACACTTCCAGTGACCTAATGCTGGCTCAGATGCTACAGATGGAATTTGACAGAGAAT 2960
Query 275 ATGATGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAAAGTTTCCATTTCCTTTGAAAATTAT 348
||||||||||||||||||||||.|||||.||.||||||||.||||||||||||||||||||.||||||||.|||
Sbjct 2961 ATGATGCACAGCTTAGGCGTGAGGAAAAGAAGTTCAATGGTGATAGCAAAGTTTCCATTTCGTTTGAAAACTAT 3034
Query 349 CGAAAAGTGCATCCTTATGAAGACAGCGATAGCTCTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGATCC 422
||.|||||.|||||||.|||||||||.||.|||||||||||.|||||||||||||||||.|||||.||.|||||
Sbjct 3035 CGCAAAGTTCATCCTTTTGAAGACAGTGACAGCTCTGAAGACGAGGTTGACTGGCAGGACACTCGAGACGATCC 3108
Query 423 CTACAGACCAGCAAAACCGGTTCCCACTCCTAAAAAGGGCTTTATTGGAAAAGGAAAAGATATCACCACCAAAC 496
|||||||||||||||.||..||||.|||||.||||||||.||||||||||||||||||||.|||||||||||.|
Sbjct 3109 CTACAGACCAGCAAAGCCAATTCCTACTCCCAAAAAGGGTTTTATTGGAAAAGGAAAAGACATCACCACCAAGC 3182
Query 497 ATGATGAAGTAGTATGTGGGAGAAAGAACACAGCAAGAATGGAAAATTTTGCACCTGAGTTTCAGGTAGGAGAT 570
|||||||||||||||||||.||.|||||||||||||||||||||||||||||.||||..|||||||||||.|||
Sbjct 3183 ATGATGAAGTAGTATGTGGAAGGAAGAACACAGCAAGAATGGAAAATTTTGCCCCTGGCTTTCAGGTAGGGGAT 3256
Query 571 GGAATTGGAATGGATTTAAAACTATCAAACCATGTTTTCAATGCTTTAAAACAACATGCCTACTCAGAAGAACG 644
|||||||||||||||||.||||||||.|||||.|||||.|||||.|||||||||||.||||||||||||||.||
Sbjct 3257 GGAATTGGAATGGATTTGAAACTATCCAACCACGTTTTTAATGCCTTAAAACAACACGCCTACTCAGAAGAGCG 3330
Query 645 TCGAAGTGCCCGCCTACATGAGAAAAAGGAGCATTCTACAGCAGAAAAAGCAGTTGATCCTAAGACACGTTTAC 718
|||.||||||||.|||||.|||||.|||||.||||||||.||.||||||||||||||||||||||||||.||||
Sbjct 3331 TCGGAGTGCCCGTCTACACGAGAAGAAGGAACATTCTACCGCTGAAAAAGCAGTTGATCCTAAGACACGCTTAC 3404
Query 719 TTATGTATAAAATGGTCAACTCTGGAATGTT-GAGACANTCACNGGNTGTTATTAGTNCAGNAAAGNNNTCTTG 791
||||||||||||||||||||||||||||||| ||||||.||||.||.|| |||||||.|||.||||...|| ||
Sbjct 3405 TTATGTATAAAATGGTCAACTCTGGAATGTTGGAGACAATCACTGGCTG-TATTAGTACAGGAAAGGAATC-TG 3476
Query 792 TTGTTCTTTCATGCATATGGAGGG-------------------------------------------------- 815
||| ||||||||||||||||||||
Sbjct 3477 TTG-TCTTTCATGCATATGGAGGGAGGTAAATGAAAAACCACAACCACAACAGTGCCACGGTGTGAAAGCACCT 3549
Query 816 -------------------------------------------------------------------------- 815
Sbjct 3550 TTCTCCTCAGGACTGACGGATTTACGTAGAATCTAACAGTGCTGCAGAGCAAGTAGGCATTTAGACATCACTAC 3623
Query 816 -------AGCATGGAGGATGAAAAGGANGATTGTAAAGGTTATACTTACAGAATGTGCCATCAAGGTATTTAAA 882
|||.||||||||||||||||.|||.||||| |.|||||..|||||||||||||||||||||||||||
Sbjct 3624 TGTATAAAGCCTGGAGGATGAAAAGGAAGATGGTAAA-GCTATACCAACAGAATGTGCCATCAAGGTATTTAAA 3696
Query 883 ACAACCCTTAAATGA-TTTAAGAATCGTGACAAATATATTAAAGATGATTTCAGGTTTAAAGATCGCTTCAGTA 955
||||||||| ||||| |||||||||||||||||.||.|||||||||||||||||||||||||||||||||||||
Sbjct 3697 ACAACCCTT-AATGAGTTTAAGAATCGTGACAAGTACATTAAAGATGATTTCAGGTTTAAAGATCGCTTCAGTA 3769
Query 956 AACTAAATCCACGTAAGATCATCCGCATGTGGGCAGAAAAAGAAATGCACAATCTCGCAAGAATGCAGAGAGCT 1029
|||||||||||||||||||||||||||||||||||||.|||||||||||||||||..||||||||||||..|||
Sbjct 3770 AACTAAATCCACGTAAGATCATCCGCATGTGGGCAGAGAAAGAAATGCACAATCTTACAAGAATGCAGAAGGCT 3843
Query 1030 GGAATTCCTTGTCCAACAGTTGTACTACTGAAGAAACACATTTTAGTTATGTCTTTTATTGGCCATGATCAAGT 1103
||||||||||||||||||||||||||.||.|||||.||||||||||||||||||||.|||||||||||||||||
Sbjct 3844 GGAATTCCTTGTCCAACAGTTGTACTGCTTAAGAAGCACATTTTAGTTATGTCTTTCATTGGCCATGATCAAGT 3917
Query 1104 TCCAGCCCCTAAATTAAAAGAAGTAAAGCTCAATAGTGAAGAAATGAAAGAAGCCTACTATCAAACTCTTCATT 1177
||||||||||||||||||||||||||||||.|.||.|||||||||||||||.|||||||||||.||||||||||
Sbjct 3918 TCCAGCCCCTAAATTAAAAGAAGTAAAGCTTAGTAATGAAGAAATGAAAGATGCCTACTATCAGACTCTTCATT 3991
Query 1178 TGATGCGGCAGTTATATCATGAATGTACGCTTGTCCATGCTGACCTCAGTGAGTATAACATGCTGTGGCATGCT 1251
||||||.|||.||||||.|.||||||||.|||||.||||||||||||||.||||||||||||.|||||||||||
Sbjct 3992 TGATGCAGCAATTATATAACGAATGTACCCTTGTGCATGCTGACCTCAGCGAGTATAACATGTTGTGGCATGCT 4065
Query 1252 GGAAAGGTCTGGTTGATCGATGTCAGTCAGTCAGTAGAACCTACCCACCCTCACGGCCTGGAGTTCTTGTTCCG 1325
||.||||||||||||||.||.|||||||||||.|||||.||.|||||.|||||.||||||||||||||.|||||
Sbjct 4066 GGGAAGGTCTGGTTGATTGACGTCAGTCAGTCGGTAGAGCCAACCCATCCTCATGGCCTGGAGTTCTTATTCCG 4139
Query 1326 GGACTGCAGGAATGTCTCGCAGTTTTTCCAGAAAGGAGGAGTCAAGGAAGCCCTTAGTGAACGAGAACTCTTCA 1399
.|||||.||||||||.||.|||||.|||||||||||||||||.|.|||||||||.|.||||||.||.||.||||
Sbjct 4140 TGACTGTAGGAATGTTTCACAGTTCTTCCAGAAAGGAGGAGTAACGGAAGCCCTCAATGAACGGGAGCTGTTCA 4213
Query 1400 ATGCTGTTTCAGGCTTAAACATCACAGCAGATAATGAAGCTGATTTTTTAGCTGAGATAGAAGCTTTGGAGAAA 1473
||||||||||.|||.|.||||||.|.|||||.||||||||||||||.||||||||||||||||||||||||||.
Sbjct 4214 ATGCTGTTTCTGGCCTGAACATCTCGGCAGACAATGAAGCTGATTTCTTAGCTGAGATAGAAGCTTTGGAGAAG 4287
Query 1474 ATGAATGAAGATCACGTTCAGAAGAATGGAAGGAAAGCTGCTTCATTTTTGAAAGATGATGGAGACCCACC--- 1544
|||||||||||||||.||||||||||.||.||||||||.||.||.|||.||||||||||||||..||||||
Sbjct 4288 ATGAATGAAGATCACATTCAGAAGAACGGGAGGAAAGCAGCCTCGTTTCTGAAAGATGATGGAAGCCCACCTGT 4361
Query 1545 -----------ACTACTATA----TGATGAA------------------------------------------- 1560
||||.||.| |||.|.|
Sbjct 4362 GCTGTCTGCCGACTAGTACAGCGGTGACGGACGGCAGCTGCCATAGCCAGCGAGTGGAGGTGACCTGACATACC 4435
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4436 AAAGCAGGAGTGGACAGTGCTGCTTCTGGGCTTCTCACTTGTGACCCACGTGCCAGATGTGTGCAATTTTTAAC 4509
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4510 TCGGCATTGAAAGAATAAAATGTCACTACCTCTCATCTTACAAAAAGGATAATATAATTCTTTAACAGGTATAG 4583
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4584 ATGTGTAGCCACAGGAGTCTGGATTTTATACAACTCATGATCTGAAGTGTCTAGATGAGGATTTTCACATAGGC 4657
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4658 AGTGTTTCCAAATGTGGGAGGTGGGGACTGAGGTGTTTGCAGGGGAGGCTCGATGGCTGCGCTCTGCTCCATTC 4731
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4732 CGCTCGCCTCCTGCTTTCCCTTGCGTCTTTGGGTGGATGTTGCTGTTTTAAATTAGCCCTTCCTAGCTGTTTGA 4805
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4806 CCGTGAGCGTGGAGACCCCAGTGGGTACTAGAAATGGGCACTTGGCCTCAGTGGATGGTGGAAATGGACATAAG 4879
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4880 CATTTTATTGGTACACCGTAGATGTGTGGAATTCTACATTTCCGTCTCATAGCCAGGAGAGGTGACAGGTTTCT 4953
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 4954 GAAAGATAAATATAAAAGGATTTCTTAACTACATTTTAAAACTTAACTTTCAGGTTTTCTTCATTAGGTTAAAT 5027
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5028 GGTTGGTTATTTACATTTATAATGAGAATACAAAGTATCTGGAAGGGCAGAAGGTAAGAATGGGATCTGCTACA 5101
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5102 TTTTAAGAAGGCAGTGAAACATTTCCGTTTACGTTTCCCCAAATTGTTCACATATTGATTGCTAATCATTTGGA 5175
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5176 GAGAACTAGAACAAAGTAAGTGGAGCTGTTCAGTAAGTGGAAGACACAGCCTGAACAGCTCAAGTACTGAATTG 5249
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5250 ACCGGCTAACTCGGCTGTGGGCCTCTGCCAGCGTCACACTGGCTGGACTCGGCCTGAGAAGGTGAGCCTTGTTC 5323
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5324 TGAAGACCAGTGCTTGCTTGCTCTCACCTCATTACCCCAGTTCCGGGAGTTACATTGGATCCACTAACCAGCTT 5397
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5398 CACTTTCTGTCTGGTTATAAAGAGTAAATGTAATTTATAGTTGAAAAATTTTAACATTATTTTAAATTGCCAAA 5471
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5472 TATGTTCTTTCTCGACTATTTATTTTTGTTTCTGTTCTACTGCTTTAATTGCATTTCAGAGGAGTGAATTTAGG 5545
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5546 TGGCTCATCCCACTTATGTTTGCTGCTCCACACAAAGATTTAAATGATGAGAAATTATTGGCTGGACACAAATT 5619
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 5620 GCAGAAAAGTCATTAGAAACAATCATTTAAAACTTTGTTTGCTTTCTTCACATATTCTTTCTCAAACCATTGCT 5693
Query 1561 ------------------------------------------------------------- 1560
Sbjct 5694 TGGAGTGTGCTATGAACTTGCCTTTCAAGAAATTAAAAATGAAGAGATCATTTTAGAATTG 5754
