Nucleotide Global Alignment

Description

Query:
TRCN0000472931
Subject:
XR_002958189.1
Aligned Length:
4134
Identities:
1402
Gaps:
2721

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AACAACAACCACCACAAACTCCGACCGTCCTTTCCAGGCCCTTTCCCTCTATAAACCTGCCGTTTTCTGTCTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAAGTCATCCCAGTTTAGAACTGCTCCAGGAAATAATGAATGAACAGAGAGAGCCTAGTTTGTTTATTTATTTA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CAATCCACTAGTCTAATCTAGTTTAGATCCAGCGGCAATTTTTGGGGTGCCAAGGAGGAAAGAAGGAGATGGCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTGCGGGGACAGGGCAGAGCCTGGGCCAAAGGAAGCCACACCCAGTTCTTGCCCTGCCCTGCCCGACACAGGCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACGTGACCCCAAGCGACAGCCAGCTGATGCTTGCTTCTCCGAGCCCGGCGGTCAGCAGCCGGAAGTAGCCCGCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CGGGGGCGGGGAAAGGTGCCTTAAGGAGGAGCTAGGGGCGTGCGGCCAATTGCAAGCGACTGTCCTAGCGAAGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGGCGGAAGAGGAGAGATCCAGTTCCGGACGCGGCCGCCGCCGTCGCCGCCATCTGTCACCTCCACTCCGGCAT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CAGCAGCCAGTCGCCCGTGTCCCGCCTGTCTCCTCGGCGGAGCCTGCTGCCCGTCCTGCCACCTCTCTGCTCTG  592

Query    1  -------------------------ATGGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGACGGCAGCGGCCT  49
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTCTTGTCTCTGCCTTCATTCCCGAATGGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGACGGCAGCGGCCT  666

Query   50  GGGGACCCAGCAAGTGTCCATGGGCTATTCCTCAAAATACAATATCTTGTTCTTTGGCTGATGTAATGAGTGAA  123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGGGACCCAGCAAGTGTCCATGGGCTATTCCTCAAAATACAATATCTTGTTCTTTGGCTGATGTAATGAGTGAA  740

Query  124  CAGCTGGCCAAAGAATTGCAGTTAGAAGAAGAAGCTGCCGTTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATT  197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGCTGGCCAAAGAATTGCAGTTAGAAGAAGAAGCTGCCGTTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATT  814

Query  198  TATTACTGGAGAAAACATTGATACTTCCAGTGACCTTATGCTGGCTCAGATGCTACAGATGGAATATGACAGAG  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TATTACTGGAGAAAACATTGATACTTCCAGTGACCTTATGCTGGCTCAGATGCTACAGATGGAATATGACAGAG  888

Query  272  AATATGATGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAAAGTTTCCATTTCCTTTGAAAAT  345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AATATGATGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAAAGTTTCCATTTCCTTTGAAAAT  962

Query  346  TATCGAAAAGTGCATCCTTATGAAGACAGCGATAGCTCTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGA  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TATCGAAAAGTGCATCCTTATGAAGACAGCGATAGCTCTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGA  1036

Query  420  TCCCTACAGACCAGCAAAACCGGTTCCCACTCCTAAAAAGGGCTTTATTGGAAAAGGAAAAGATATCACCACCA  493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCCCTACAGACCAGCAAAACCGGTTCCCACTCCTAAAAAGGGCTTTATTGGAAAAGGAAAAGATATCACCACCA  1110

Query  494  AACATGATGAAGTAGTATGTGGGAGAAAGAACACAGCAAGAATGGAAAATTTTGCACCTGAGTTTCAGGTAGGA  567
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AACATGATGAAGTAGTATGTGGGAGAAAGAACACAGCAAGAATGGAAAATTTTGCACCTGAGTTTCAGGTAGGA  1184

Query  568  GATGGAATTGGAATGGATTTAAAACTATCAAACCATGTTTTCAATGCTTTAAAACAACATGCCTACTCAGAAGA  641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GATGGAATTGGAATGGATTTAAAACTATCAAACCATGTTTTCAATGCTTTAAAACAACATGCCTACTCAGAAGA  1258

Query  642  ACGTCGAAGTGCCCGCCTACATGAGAAAAAGGAGCATTCTACAGCAGAAAAAGCAGTTGATCCTAAGACACGTT  715
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ACGTCGAAGTGCCCGCCTACATGAGAAAAAGGAGCATTCTACAGCAGAAAAAGCAGTTGATCCTAAGACACGTT  1332

Query  716  TACTTATGTATAAAATGGTCAACTCTGGAATGTT-GAGACANTCACNGGNTGTTATTAGTNCAGNAAAGNNNTC  788
            |||||||||||||||||||||||||||||||||| ||||||.||||.||.|| |||||||.|||.||||...||
Sbjct 1333  TACTTATGTATAAAATGGTCAACTCTGGAATGTTGGAGACAATCACTGGCTG-TATTAGTACAGGAAAGGAGTC  1405

Query  789  TTGTTGTTCTTTCATGCATATGGAGGGAGCATGGAGGATGAAAAGGANGATTGTAAAGGTTATACTTACAGAAT  862
             ||||| ||||||||||||||||||||||||||||||||||||||||.|||.||||| |||||||.||||||||
Sbjct 1406  -TGTTG-TCTTTCATGCATATGGAGGGAGCATGGAGGATGAAAAGGAAGATAGTAAA-GTTATACCTACAGAAT  1476

Query  863  GTGCCATCAAGGTATTTAAAACAACCCTTAAATGATTTAAGAATCGTGACAAATATATTAAAGATGATTTCAGG  936
            |||||||                                                                   
Sbjct 1477  GTGCCAT-------------------------------------------------------------------  1483

Query  937  TTTAAAGATCGCTTCAGTAAACTAAATCCACGTAAGATCATCCGCATGTGGGCAGAAAAAGAAATGCACAATCT  1010
                                                                                      
Sbjct 1484  --------------------------------------------------------------------------  1483

Query 1011  CGCAAGAATGCAGAGAGCTGGAATTCCTTGTCCAACAGTTGTACTACTGAAGAAACACATTTTAGTTATGTCTT  1084
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484  --CAAGAATGCAGAGAGCTGGAATTCCTTGTCCAACAGTTGTACTACTGAAGAAACACATTTTAGTTATGTCTT  1555

Query 1085  TTATTGGCCATGATCAAGTTCCAGCCCCTAAATTAAAAGAAGTAAAGCTCAATAGTGAAGAAATGAAAGAAGCC  1158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556  TTATTGGCCATGATCAAGTTCCAGCCCCTAAATTAAAAGAAGTAAAGCTCAATAGTGAAGAAATGAAAGAAGCC  1629

Query 1159  TACTATCAAACTCTTCATTTGATGCGGCAGTTATATCATGAATGTACGCTTGTCCATGCTGACCTCAGTGAGTA  1232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630  TACTATCAAACTCTTCATTTGATGCGGCAGTTATATCATGAATGTACGCTTGTCCATGCTGACCTCAGTGAGTA  1703

Query 1233  TAACATGCTGTGGCATGCTGGAA---------------------------------------------------  1255
            |||||||||||||||||||||||                                                   
Sbjct 1704  TAACATGCTGTGGCATGCTGGAAAGGTGAGGAGCACATTTTGTTAACATTCAGATTTAATTACTGTAAGTAAAA  1777

Query 1256  -----------------------------------------AGGTCTGGTTGATCGATGTCAGTCAGTCAGTAG  1288
                                                     |||||||||||||||||||||||||||||||||
Sbjct 1778  TTTAAAATGTAAATACATCAGTTCATGTTCTGTATTGAAATAGGTCTGGTTGATCGATGTCAGTCAGTCAGTAG  1851

Query 1289  AACCTACCCACCCTCACGGCCTGGAGTTCTTGTTCCGGGACTGCAGGAATGTCTCGCAGTTTTTCCAGAAAGGA  1362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852  AACCTACCCACCCTCACGGCCTGGAGTTCTTGTTCCGGGACTGCAGGAATGTCTCGCAGTTTTTCCAGAAAGGA  1925

Query 1363  GGAGTCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATGCTGTTTCAGGCTTAAACATCACAGCAGATAATGA  1436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926  GGAGTCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATGCTGTTTCAGGCTTAAACATCACAGCAGATAATGA  1999

Query 1437  AGCTGATTTTTTAGCTGAGATAGAAGCTTTGGAGAAAATGAATGAAGATCACGTTCAGAAGAATGGAAGGAAAG  1510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2000  AGCTGATTTTTTAGCTGAGATAGAAGCTTTGGAGAAAATGAATGAAGATCACGTTCAGAAGAATGGAAGGAAAG  2073

Query 1511  CTGCTTCATTTTTGAAAGATGATGGAGACCCACCACTACTATATGATGAA------------------------  1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||                        
Sbjct 2074  CTGCTTCATTTTTGAAAGATGATGGAGACCCACCACTACTATATGATGAATAGCACTAATACCCACTGCTTCAG  2147

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2148  TGTTAACACAGCAGTGATTGTCAGCTGCCAATAGCAAATGAAGTTATGGGTGACTTGAAATACCAAAACCTGAG  2221

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2222  GAGTGGGCAATGGTGCTTCTGTGCTTTTCCCCCTTGTAACCCATGTGCCAGATGTGTGGAATTTTTAGCTCAGC  2295

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2296  ATTGAGAGAATAAAATGTCACTACCTCTCATCTTATGAACAGGATAATATAATTCTTTAACAGCTATAGGTTAT  2369

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2370  CTGGCTGAAGTAGACCTAATTTTATGTGACTTGTGGTGTAAAATGTCTTGATGATAATTTTTAAAACTTGGGTA  2443

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2444  ACACTTCCAAATATGGGAGGAAAGGACAGATGTGTTTACAAGGGAGGATTTTACAACATACTTGCTTTATTCAC  2517

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2518  CTCCCTGTTTTGTGTTGCGTCTTTCCTTGAATATTTTATTGGCCCAGAGTTAGCCTTTCTCAATTATGTTTCCA  2591

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2592  GACTGTGGCCGTGATTCTAAAGGAAAATGTGTGCTCTTTAGTGGGTAGAACAAATGGAAATTTGGTTTCAGAAT  2665

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2666  GGCTGACAGAAATCGACATAAGTCATGTAATTTTTGTTGATATATCATGAAAATGAACAGAATTCTTTTTCCAT  2739

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2740  ACTTATATCTAAGAAAAGGCATCATAGGTTTCTGAAAGAGATAACTATATAACAGCTTTTTAACTATCCAGTCA  2813

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2814  ACTTTCAGCTTTTCTACATTTAGGTAAAATGGTTAGGATATAACTCATGGTGTGGCTAATCTACATTTATCAAT  2887

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2888  AAAATGTAAATTATCTGAAAGGACAGAATATAAGATTTAACCATGTTTGACGTATTTTAATTTAGTTAATGAAG  2961

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 2962  CAAAATTCAGTTTATATTTCACTAGAACTGTGTACTTGATTGATTTTCAGAGAAATATCACAAATTAGAAATAT  3035

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3036  TAAATCTAAGGATGAAAGGTATATATAAAACAATTTGGGGGCCAGGCACGATGGCTCAAACCTGTAATCCCAGC  3109

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3110  ACTTTGGGAGACCAAGGCGGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGGCAACATGGCGAAACC  3183

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3184  CTGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCACTTCTCTGTAATCTCAGCTTCTCAGGAGGCT  3257

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3258  GAGACAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCGGCCT  3331

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3332  AGGTGACAGAGGGAAACTCCATCTCCAGGAAAAAAAAAAAAAAACCCAATTTGGATACCAAATTAATCAACTAA  3405

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3406  TTTGAGCTATCTGGCCTTACTCTTAGTAGTTTTTAGTACGTGCTGGACACCACTTTTAAAAAGCAATCACTGTG  3479

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3480  CTAGAAAAGTATATTGGCTTTGTTAGGATTAAAGTTCATTAACTTCAATGTAATCATGCCTCCTATTACTGAAG  3553

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3554  TCAGATTGGAACCACTAAAGATCCAAACTTTCTGTCTGGTAATAGAAAGTAAAAATCTAGACATCATTTACATT  3627

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3628  TGAGAAAGCTGTTTTTAACATTATTTTAAAATGCCAAATATGTTCTTTCTAGAAAAATATTTATTTTTGTTTTT  3701

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3702  GTTGGATAGCTTTTAATTACATTTCAGAGAGGTGTAATTTTGGGTAGATGCTCATTACATTTTTGAAAGGTTTA  3775

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3776  TGATTCCAAAATAAAGATTTATATGACTGGTGATACTGGCTTTACAGAAATTTCAGAGAACTAATTTTTAAAAT  3849

Query 1561  --------------------------------------------------------------------------  1560
                                                                                      
Sbjct 3850  CTTTAGCATTTAAAACTTTTTTTGTTTTGTTTTCTGACATATTCTGACAAAGAGCAGCAAACCACTGCTGTGTG  3923

Query 1561  ----------------------------------------------------------------  1560
                                                                            
Sbjct 3924  GCATTCTTGGAGTGTGCTGTGAATGTGCTTTTTAAGAAATTAAAAAGAGATCATTTTAAAATTG  3987

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