Nucleotide Global Alignment
Description
- Query:
- TRCN0000472931
- Subject:
- XR_002958189.1
- Aligned Length:
- 4134
- Identities:
- 1402
- Gaps:
- 2721
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AACAACAACCACCACAAACTCCGACCGTCCTTTCCAGGCCCTTTCCCTCTATAAACCTGCCGTTTTCTGTCTCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAAGTCATCCCAGTTTAGAACTGCTCCAGGAAATAATGAATGAACAGAGAGAGCCTAGTTTGTTTATTTATTTA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAATCCACTAGTCTAATCTAGTTTAGATCCAGCGGCAATTTTTGGGGTGCCAAGGAGGAAAGAAGGAGATGGCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTGCGGGGACAGGGCAGAGCCTGGGCCAAAGGAAGCCACACCCAGTTCTTGCCCTGCCCTGCCCGACACAGGCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACGTGACCCCAAGCGACAGCCAGCTGATGCTTGCTTCTCCGAGCCCGGCGGTCAGCAGCCGGAAGTAGCCCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGGGGGCGGGGAAAGGTGCCTTAAGGAGGAGCTAGGGGCGTGCGGCCAATTGCAAGCGACTGTCCTAGCGAAGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGGCGGAAGAGGAGAGATCCAGTTCCGGACGCGGCCGCCGCCGTCGCCGCCATCTGTCACCTCCACTCCGGCAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAGCAGCCAGTCGCCCGTGTCCCGCCTGTCTCCTCGGCGGAGCCTGCTGCCCGTCCTGCCACCTCTCTGCTCTG 592
Query 1 -------------------------ATGGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGACGGCAGCGGCCT 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTCTTGTCTCTGCCTTCATTCCCGAATGGATCTGGTAGGAGTGGCATCGCCTGAGCCCGGGACGGCAGCGGCCT 666
Query 50 GGGGACCCAGCAAGTGTCCATGGGCTATTCCTCAAAATACAATATCTTGTTCTTTGGCTGATGTAATGAGTGAA 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGGGACCCAGCAAGTGTCCATGGGCTATTCCTCAAAATACAATATCTTGTTCTTTGGCTGATGTAATGAGTGAA 740
Query 124 CAGCTGGCCAAAGAATTGCAGTTAGAAGAAGAAGCTGCCGTTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATT 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CAGCTGGCCAAAGAATTGCAGTTAGAAGAAGAAGCTGCCGTTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATT 814
Query 198 TATTACTGGAGAAAACATTGATACTTCCAGTGACCTTATGCTGGCTCAGATGCTACAGATGGAATATGACAGAG 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TATTACTGGAGAAAACATTGATACTTCCAGTGACCTTATGCTGGCTCAGATGCTACAGATGGAATATGACAGAG 888
Query 272 AATATGATGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAAAGTTTCCATTTCCTTTGAAAAT 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AATATGATGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAAAGTTTCCATTTCCTTTGAAAAT 962
Query 346 TATCGAAAAGTGCATCCTTATGAAGACAGCGATAGCTCTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TATCGAAAAGTGCATCCTTATGAAGACAGCGATAGCTCTGAAGATGAGGTTGACTGGCAGGATACTCGTGATGA 1036
Query 420 TCCCTACAGACCAGCAAAACCGGTTCCCACTCCTAAAAAGGGCTTTATTGGAAAAGGAAAAGATATCACCACCA 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TCCCTACAGACCAGCAAAACCGGTTCCCACTCCTAAAAAGGGCTTTATTGGAAAAGGAAAAGATATCACCACCA 1110
Query 494 AACATGATGAAGTAGTATGTGGGAGAAAGAACACAGCAAGAATGGAAAATTTTGCACCTGAGTTTCAGGTAGGA 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AACATGATGAAGTAGTATGTGGGAGAAAGAACACAGCAAGAATGGAAAATTTTGCACCTGAGTTTCAGGTAGGA 1184
Query 568 GATGGAATTGGAATGGATTTAAAACTATCAAACCATGTTTTCAATGCTTTAAAACAACATGCCTACTCAGAAGA 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GATGGAATTGGAATGGATTTAAAACTATCAAACCATGTTTTCAATGCTTTAAAACAACATGCCTACTCAGAAGA 1258
Query 642 ACGTCGAAGTGCCCGCCTACATGAGAAAAAGGAGCATTCTACAGCAGAAAAAGCAGTTGATCCTAAGACACGTT 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACGTCGAAGTGCCCGCCTACATGAGAAAAAGGAGCATTCTACAGCAGAAAAAGCAGTTGATCCTAAGACACGTT 1332
Query 716 TACTTATGTATAAAATGGTCAACTCTGGAATGTT-GAGACANTCACNGGNTGTTATTAGTNCAGNAAAGNNNTC 788
|||||||||||||||||||||||||||||||||| ||||||.||||.||.|| |||||||.|||.||||...||
Sbjct 1333 TACTTATGTATAAAATGGTCAACTCTGGAATGTTGGAGACAATCACTGGCTG-TATTAGTACAGGAAAGGAGTC 1405
Query 789 TTGTTGTTCTTTCATGCATATGGAGGGAGCATGGAGGATGAAAAGGANGATTGTAAAGGTTATACTTACAGAAT 862
||||| ||||||||||||||||||||||||||||||||||||||||.|||.||||| |||||||.||||||||
Sbjct 1406 -TGTTG-TCTTTCATGCATATGGAGGGAGCATGGAGGATGAAAAGGAAGATAGTAAA-GTTATACCTACAGAAT 1476
Query 863 GTGCCATCAAGGTATTTAAAACAACCCTTAAATGATTTAAGAATCGTGACAAATATATTAAAGATGATTTCAGG 936
|||||||
Sbjct 1477 GTGCCAT------------------------------------------------------------------- 1483
Query 937 TTTAAAGATCGCTTCAGTAAACTAAATCCACGTAAGATCATCCGCATGTGGGCAGAAAAAGAAATGCACAATCT 1010
Sbjct 1484 -------------------------------------------------------------------------- 1483
Query 1011 CGCAAGAATGCAGAGAGCTGGAATTCCTTGTCCAACAGTTGTACTACTGAAGAAACACATTTTAGTTATGTCTT 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 --CAAGAATGCAGAGAGCTGGAATTCCTTGTCCAACAGTTGTACTACTGAAGAAACACATTTTAGTTATGTCTT 1555
Query 1085 TTATTGGCCATGATCAAGTTCCAGCCCCTAAATTAAAAGAAGTAAAGCTCAATAGTGAAGAAATGAAAGAAGCC 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 TTATTGGCCATGATCAAGTTCCAGCCCCTAAATTAAAAGAAGTAAAGCTCAATAGTGAAGAAATGAAAGAAGCC 1629
Query 1159 TACTATCAAACTCTTCATTTGATGCGGCAGTTATATCATGAATGTACGCTTGTCCATGCTGACCTCAGTGAGTA 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1630 TACTATCAAACTCTTCATTTGATGCGGCAGTTATATCATGAATGTACGCTTGTCCATGCTGACCTCAGTGAGTA 1703
Query 1233 TAACATGCTGTGGCATGCTGGAA--------------------------------------------------- 1255
|||||||||||||||||||||||
Sbjct 1704 TAACATGCTGTGGCATGCTGGAAAGGTGAGGAGCACATTTTGTTAACATTCAGATTTAATTACTGTAAGTAAAA 1777
Query 1256 -----------------------------------------AGGTCTGGTTGATCGATGTCAGTCAGTCAGTAG 1288
|||||||||||||||||||||||||||||||||
Sbjct 1778 TTTAAAATGTAAATACATCAGTTCATGTTCTGTATTGAAATAGGTCTGGTTGATCGATGTCAGTCAGTCAGTAG 1851
Query 1289 AACCTACCCACCCTCACGGCCTGGAGTTCTTGTTCCGGGACTGCAGGAATGTCTCGCAGTTTTTCCAGAAAGGA 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 AACCTACCCACCCTCACGGCCTGGAGTTCTTGTTCCGGGACTGCAGGAATGTCTCGCAGTTTTTCCAGAAAGGA 1925
Query 1363 GGAGTCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATGCTGTTTCAGGCTTAAACATCACAGCAGATAATGA 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1926 GGAGTCAAGGAAGCCCTTAGTGAACGAGAACTCTTCAATGCTGTTTCAGGCTTAAACATCACAGCAGATAATGA 1999
Query 1437 AGCTGATTTTTTAGCTGAGATAGAAGCTTTGGAGAAAATGAATGAAGATCACGTTCAGAAGAATGGAAGGAAAG 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2000 AGCTGATTTTTTAGCTGAGATAGAAGCTTTGGAGAAAATGAATGAAGATCACGTTCAGAAGAATGGAAGGAAAG 2073
Query 1511 CTGCTTCATTTTTGAAAGATGATGGAGACCCACCACTACTATATGATGAA------------------------ 1560
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 CTGCTTCATTTTTGAAAGATGATGGAGACCCACCACTACTATATGATGAATAGCACTAATACCCACTGCTTCAG 2147
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2148 TGTTAACACAGCAGTGATTGTCAGCTGCCAATAGCAAATGAAGTTATGGGTGACTTGAAATACCAAAACCTGAG 2221
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2222 GAGTGGGCAATGGTGCTTCTGTGCTTTTCCCCCTTGTAACCCATGTGCCAGATGTGTGGAATTTTTAGCTCAGC 2295
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2296 ATTGAGAGAATAAAATGTCACTACCTCTCATCTTATGAACAGGATAATATAATTCTTTAACAGCTATAGGTTAT 2369
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2370 CTGGCTGAAGTAGACCTAATTTTATGTGACTTGTGGTGTAAAATGTCTTGATGATAATTTTTAAAACTTGGGTA 2443
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2444 ACACTTCCAAATATGGGAGGAAAGGACAGATGTGTTTACAAGGGAGGATTTTACAACATACTTGCTTTATTCAC 2517
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2518 CTCCCTGTTTTGTGTTGCGTCTTTCCTTGAATATTTTATTGGCCCAGAGTTAGCCTTTCTCAATTATGTTTCCA 2591
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2592 GACTGTGGCCGTGATTCTAAAGGAAAATGTGTGCTCTTTAGTGGGTAGAACAAATGGAAATTTGGTTTCAGAAT 2665
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2666 GGCTGACAGAAATCGACATAAGTCATGTAATTTTTGTTGATATATCATGAAAATGAACAGAATTCTTTTTCCAT 2739
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2740 ACTTATATCTAAGAAAAGGCATCATAGGTTTCTGAAAGAGATAACTATATAACAGCTTTTTAACTATCCAGTCA 2813
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2814 ACTTTCAGCTTTTCTACATTTAGGTAAAATGGTTAGGATATAACTCATGGTGTGGCTAATCTACATTTATCAAT 2887
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2888 AAAATGTAAATTATCTGAAAGGACAGAATATAAGATTTAACCATGTTTGACGTATTTTAATTTAGTTAATGAAG 2961
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 2962 CAAAATTCAGTTTATATTTCACTAGAACTGTGTACTTGATTGATTTTCAGAGAAATATCACAAATTAGAAATAT 3035
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3036 TAAATCTAAGGATGAAAGGTATATATAAAACAATTTGGGGGCCAGGCACGATGGCTCAAACCTGTAATCCCAGC 3109
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3110 ACTTTGGGAGACCAAGGCGGGTGGATCACTTGAGGTCAGGAGTTCAAGACCAGCCTGGGCAACATGGCGAAACC 3183
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3184 CTGTCTCTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCACTTCTCTGTAATCTCAGCTTCTCAGGAGGCT 3257
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3258 GAGACAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCGGCCT 3331
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3332 AGGTGACAGAGGGAAACTCCATCTCCAGGAAAAAAAAAAAAAAACCCAATTTGGATACCAAATTAATCAACTAA 3405
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3406 TTTGAGCTATCTGGCCTTACTCTTAGTAGTTTTTAGTACGTGCTGGACACCACTTTTAAAAAGCAATCACTGTG 3479
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3480 CTAGAAAAGTATATTGGCTTTGTTAGGATTAAAGTTCATTAACTTCAATGTAATCATGCCTCCTATTACTGAAG 3553
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3554 TCAGATTGGAACCACTAAAGATCCAAACTTTCTGTCTGGTAATAGAAAGTAAAAATCTAGACATCATTTACATT 3627
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3628 TGAGAAAGCTGTTTTTAACATTATTTTAAAATGCCAAATATGTTCTTTCTAGAAAAATATTTATTTTTGTTTTT 3701
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3702 GTTGGATAGCTTTTAATTACATTTCAGAGAGGTGTAATTTTGGGTAGATGCTCATTACATTTTTGAAAGGTTTA 3775
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3776 TGATTCCAAAATAAAGATTTATATGACTGGTGATACTGGCTTTACAGAAATTTCAGAGAACTAATTTTTAAAAT 3849
Query 1561 -------------------------------------------------------------------------- 1560
Sbjct 3850 CTTTAGCATTTAAAACTTTTTTTGTTTTGTTTTCTGACATATTCTGACAAAGAGCAGCAAACCACTGCTGTGTG 3923
Query 1561 ---------------------------------------------------------------- 1560
Sbjct 3924 GCATTCTTGGAGTGTGCTGTGAATGTGCTTTTTAAGAAATTAAAAAGAGATCATTTTAAAATTG 3987
