Nucleotide Global Alignment

Description

Query:
TRCN0000473121
Subject:
XM_006535470.1
Aligned Length:
2894
Identities:
343
Gaps:
2503

Alignment

Query    1  ------------------------------------ATGGATACTGAACCAAACCCGGGAACATCTTCTGTGTC  38
                                                |||||||.|||.||.|.|.|.||||||   ||.|||||
Sbjct    1  ATGGCGGAAGCGGAGTTTAAGGACCACAGCACAGCTATGGATAGTGAGCCGAGCTCTGGAACA---TCCGTGTC  71

Query   39  AACAACAACCAGCAGTACCACCACCACCACCATCACCACTTCCTCCTCTCGAATGCAGCAGCCACAGATCTCTG  112
            |||||||.|||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||
Sbjct   72  AACAACAGCCAGCAGTACCACCACCACCACCATCACCACATCCTCCTCCCGAATGCAGCAGCCACAGATCTCTG  145

Query  113  TCTACAGTGGTTCAGACCGACATGCTGT------------ACAGGCATTGCATCGGCCCCCCAGCTCAGCTGCT  174
            |||||||.||.|||||||||||||||||            .|||||.||||||||||||||||||||.||.|||
Sbjct  146  TCTACAGCGGGTCAGACCGACATGCTGTTCAGGTAATTCAGCAGGCCTTGCATCGGCCCCCCAGCTCGGCAGCT  219

Query  175  CAGTACCTTCAGCAAATGTATGCAGCCCAACAACAGCACTTGATGCTGCATACTGCAGCTCTTCAGCAGCAGCA  248
            ||||||||.|||||.|||||.||.||.||.||.||||||.||||||||||.||.||.|||||.|||||||||||
Sbjct  220  CAGTACCTGCAGCAGATGTACGCGGCTCAGCAGCAGCACCTGATGCTGCACACGGCTGCTCTGCAGCAGCAGCA  293

Query  249  TTTAAGCAGCTCCCAGCTTCAGAGCCTTGCTGCTGTTCAGGCAAGTTTGTCCAGTGGAAGACCATCTACATCTC  322
            ..||||||||||.|||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||||.|
Sbjct  294  CCTAAGCAGCTCGCAGCTCCAGAGCCTTGCGGCTGTCCAGGCAAGTTTGTCCAGTGGAAGACCATCTACATCCC  367

Query  323  CCACAGGAAGTGTCACACAGCAGTCAAGTATGTCCCAAACGTCTGT-AAGTTCCCTAAATTTTTTTTTCCTG--  393
            |||||||.|||||.|||||.|||||||||||||||||.||.|||.| ..||.|.|         ||.|||||  
Sbjct  368  CCACAGGCAGTGTTACACAACAGTCAAGTATGTCCCAGACATCTATCCTGTCCGC---------TTCTCCTGCA  432

Query  394  -----------GATTTAAA----------------ATTT-----------------------------------  405
                       ||  |.||                |.||                                   
Sbjct  433  CCTGCTCAGCTGA--TGAACCGCTCCCAGACGTCCAGTTCTACCAGCGGCAGTATTACCCAGCAGACTATGCTA  504

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  505  CTCGGGAGTACCTCTCCCACCCTAACTGCCAGCCAAGCCCAGATGTATCTCCGAGCTCAGATGGTTCAGAATTT  578

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  579  AACCTTACGCAGCCAGAAGCTGGGTGTCTTATCTAGCTCACAGAATGGCTCACCAAAAAGCGCTGGTCAAACCC  652

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  653  AGTCCTTGACAATTTGCCATAATAAAACAACAGTGACCAGTTCTAAAATCAGCCAACGAGACCCTTCTCCAGAG  726

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  727  AGCAAGAAGGGAGGAAGCCCAGGTCTGGAATCTCGGAGCACGGCCGTCACTCGGACATCAAGCATCCACCAGTT  800

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  801  AATAGCACCAGCTTCATATTCTCCAATTCAGCCTCATTCTCTAATCAAACATCAGCAGATTCCTCTTCATTCAC  874

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  875  CACCTCCTAAAGTTTCCCATCATCAGCTGCTATTACAACAGCAACAACAGCAAATTCAGCCAATCACCCTTCAG  948

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  949  AGTCCAAGTCAAGATCCACCCCCATCCCAGCACTGTATCCCACTCCCAAACCATGGCCTTTCTCCGGCTCCCAG  1022

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1023  TAATGCCCAGCCGCAGCATTGCTCCCCAGTTCAGAGCCATCCTCCGCCTTTAACTGTGTCTCCCAACCAGGCAC  1096

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1097  AGTCCGCACAGCAGTCTGTAGTGGTGTCTCCTCCCCCCCCTCATTCCCCAAGTCAGTCTCCTACTATAATTATC  1170

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1171  CATCCACAAGCACTTATCCAGCCACACCCTCTTGTGTCTTCAGCTCTTCAAACAGGGCCAAATTTGCAGCAGGC  1244

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1245  TGCTGCTGATCAGGTACAGTCCACCGCACAGCTGAATCTTCCATCCCATCTTCCACTTCCAGCATCCCCTGTTG  1318

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1319  TACACATTGGCCCTGTCCAGCAGTCTGCCTTGGTGTCCCCTGGTCAGCAGATGGTGTCCCCAACATCACACCAG  1392

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1393  CAGTATTCAGCCCTACAGTCCTCTCCAATTCCCATCGCGACCCCTCCACAGATGTCGGCATCTCCTCCAGCTCA  1466

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1467  GCTCCCACCACTGCCCTTGCAGTCTATGCAGTCTTTACAAGTGCAGCCTGAAATTCTATCCCAGGGCCAGGTTT  1540

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1541  TGGTGCAGAATGCTTTGGTGTCAGAAGAGGAGCTACCTGCTGCAGAAGCTTTGGTCCAGTTGCCATTTCAGACT  1614

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1615  CTTCCTCCTCCACAGACTGTTGCGGTAAATCTACAAGTACAGCCGCCAGCACCTGTTGATCCACCAGTGGTTTA  1688

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1689  TCAAGTAGAAGATGTGTGTGAGGAAGAAATGCCAGAGGAGTCCGATGAGTGTGCAAGGATGGACAGAACCCCCC  1762

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1763  CACCCCCCACCTTGTCTCCAGCAGCTGTCACTGTGGGGAGGGGAGAGGACTTGACATCCGAACATCCTTTGTTA  1836

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1837  GAGCAAGTGGAGTTGCCTGCTGTGGCCTCAGTCAGTGCTTCCGTGATCAAGTCTCCATCAGACCCCACCCATGC  1910

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1911  CTCTGCTCCTGCACCTCCCCTCTTAATCCCTGCTGCCTCCACCAGGAGCAGCAGCACTTCTCTGGCCAGCAGCA  1984

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1985  CTCCCAGCCTGGAAAACAAGCCTCCACAGGCTATTGTGAAACCACAGATTTTGACCCACGTTATAGAAGGCTTT  2058

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2059  GTGATTCAGGAGGGGCTGGAGCCGTTTCCTGTGAGTCGATCATCACTGCTGATAGAACAACCTGTGAAGAAGAG  2132

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2133  GCCTCTCTTGGATAATCAGGTGGTAAACTCTGTGTGTGTCCAGCCAGAGTTACAGAATAACACAAAGCATGCAG  2206

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2207  ATAACTCATCCGACACAGAGATAGAAGACATGATGGCTGAAGAGACATTGGAAGAAATGGATAGCGAGTTACTC  2280

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2281  AAGTGTGAATTCTGTGGAAAAATGGGATATCCTAATGAATTTTTACGGTCCAAACGATTCTGTACTATGTCATG  2354

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2355  TGCCAAAAGGTACAACGTTAGCTGTTCTAAAAAATTTGCACTTAGTCGTTGGAATCGTAAGCCTGATAATCAGA  2428

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2429  GTCTTGGGCATCGGGGCCGTCGTCCAAGTGGCCCTGAAGGGGCAGCAAGAGAACATATCCTTAGGCAGCTTCCA  2502

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2503  ATTACTTATCCATCTGCAGAAGAAGACGTGGCCTCTCATGAAGATCCTGTGCCTTCTGCTATGACGACCCGTCT  2576

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2577  GCGAAGGCAGAGCGAGCGGGAAAGAGAGCGAGAGCTTCGGGATGTGAGGATTAGGAAGATGCCTGAGAATAGTG  2650

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2651  ACTTGCTCCCAGTCGCACAGACTGAGCCCTCCATATGGACAGTCGACGACGTCTGGGCCTTCATCCATTCTTTG  2724

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2725  CCCGGCTGCCAGGACGTTGCAGATGAGTTCAGGGCACAAGAGATTGATGGGCAGGCCCTGCTCTTGCTAAAAGA  2798

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2799  AGACCATCTCATGAGTGCAATGAACATGAAGCTGGGCCCAGCCCTGAAGATTTGTGCACGCATCAACTCTCTGA  2872

Query  406  --------  405
                    
Sbjct 2873  AGGACTCT  2880

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