Nucleotide Global Alignment
Description
- Query:
- TRCN0000473607
- Subject:
- XM_011535555.2
- Aligned Length:
- 4884
- Identities:
- 1262
- Gaps:
- 3621
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCACACATTGCCAGATCATCAGCTGCGTAAAAAATACAAGAGACTGTGTCTATCTAGTAAAGATCCCATCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CACAGCAGTTGCAACTGGGACTACCAGCTTGTTAAATTTGCAGAAGTCTACCCTCATCTGTTGTGCTCTGTCTA 148
Query 1 --------------------------------------------------------------------ATGACT 6
||||||
Sbjct 149 GCTTCTACAAAAGCAAGACTGGAGAAATAAGCAGGATTGTACATCTTTTAAATTGTGTATTTTGTGTCATGACT 222
Query 7 TCTCAAGAGAAGACAGAAGAGTATCCTTTTGCAGATATATTTGATGAAGATGAAACTGAAAGGAATTTTTTGTT 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TCTCAAGAGAAGACAGAAGAGTATCCTTTTGCAGATATATTTGATGAAGATGAAACTGAAAGGAATTTTTTGTT 296
Query 81 GTCCAAACCTGTTTGCTTTGTTGTATTTGGGAAACCAGGTGTTGGGAAAACAACATTAGCCCGTTACATAACAC 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTCCAAACCTGTTTGCTTTGTTGTATTTGGGAAACCAGGTGTTGGGAAAACAACATTAGCCCGTTACATAACAC 370
Query 155 AGGCATGGAAATGTATTCGTGTTGAAGCTTTGCCAATTTTAGAAGAACAGATTGCTGCTGAAACCGAATCAGGA 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGGCATGGAAATGTATTCGTGTTGAAGCTTTGCCAATTTTAGAAGAACAGATTGCTGCTGAAACCGAATCAGGA 444
Query 229 GTTATGTTGCAATCAATGTTGATCAGCGGTCAAAGCATTCCAGATGAACTTGTCATAAAGCTAATGTTGGAGAA 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTTATGTTGCAATCAATGTTGATCAGCGGTCAAAGCATTCCAGATGAACTTGTCATAAAGCTAATGTTGGAGAA 518
Query 303 GCTCAACTCCCCAGAAGTCTGTCACTTTGGTTATATTATCACTGAAATACCATCACTTTCACAGGATGCCATGA 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCTCAACTCCCCAGAAGTCTGTCACTTTGGTTATATTATCACTGAAATACCATCACTTTCACAGGATGCCATGA 592
Query 377 CTACCTTACAGCAAATAGAATTAATTAAAAACTTAAACCTGAAACCTGATGTTATAATCAATATAAAGTGTCCT 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTACCTTACAGCAAATAGAATTAATTAAAAACTTAAACCTGAAACCTGATGTTATAATCAATATAAAGTGTCCT 666
Query 451 GACTATGATTTGTGCCAGAGAATTTCTGGGCAAAGACAGCACAATAATACGGGATACATATACAGTAGAGACCA 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GACTATGATTTGTGCCAGAGAATTTCTGGGCAAAGACAGCACAATAATACGGGATACATATACAGTAGAGACCA 740
Query 525 GTGGGATCCTGAAGTCATTGAGAATCATAGGAAAAAGAAGAAAGAAGCCCAAAAGGACGGAAAAGGAGAAGAGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTGGGATCCTGAAGTCATTGAGAATCATAGGAAAAAGAAGAAAGAAGCCCAAAAGGACGGAAAAGGAGAAGAGG 814
Query 599 AAGAAGAGGAAGAAGAGCAAGAAGAAGAAGAGGCATTTATTGCCGAAATGCAGATGGTGGCTGAAATTCTTCAT 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGAAGAGGAAGAAGAGCAAGAAGAAGAAGAGGCATTTATTGCCGAAATGCAGATGGTGGCTGAAATTCTTCAT 888
Query 673 CATCTAGTCCAGAGGCCTGAAGATTATTTGGAAAATGTTGAAAACATTGTTAAGCTTTATAAGGAAACAATTCT 746
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CATCTAGTTCAGAGGCCTGAAGATTATTTGGAAAATGTTGAAAACATTGTTAAGCTTTATAAGGAAACAATTCT 962
Query 747 CCAAACTTTAGAAGAAGTAATGGCTGAACACAATCCCCAGTATCTCATTGAGCTAAATGGAAATAAACCAGCAG 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CCAAACTTTAGAAGAAGTAATGGCTGAACACAATCCCCAGTATCTCATTGAGCTAAATGGAAATAAACCAGCAG 1036
Query 821 AGGAGCTCTTTATGATTGTTATGGATCGACTTAAATATCTGAACCTAAAAAGAGCAGCTATTCTAACCAAACTT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGGAGCTCTTTATGATTGTTATGGATCGACTTAAATATCTGAACCTAAAAAGAGCAGCTATTCTAACCAAACTT 1110
Query 895 CAGGGTGCAGAGGAAGAAATTAATGACACAATGGAAAATGATGAGCTATTTCGTACTCTTGCATCTTATAAACT 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CAGGGTGCAGAGGAAGAAATTAATGACACAATGGAAAATGATGAGCTATTTCGTACTCTTGCATCTTATAAACT 1184
Query 969 TATTGCACCAAGATACAGATGGCAAAGAAGTAAATGGGGACGTACATGTCCTGTGAATTTAAAAGATGGTAACA 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TATTGCACCAAGATACAGATGGCAAAGAAGTAAATGGGGACGTACATGTCCTGTGAATTTAAAAGATGGTAACA 1258
Query 1043 TTTATTCAGGATTACCAGATTATTCTGTGAGTTTTCTAGGTAAAATCTACTGTCTTTCATCAGAAGAAGCATTA 1116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTATTCAGGATTACCAGATTATTCTGTGAGTTTTCTAGGTAAAATCTACTGTCTTTCATCAGAAGAAGCATTA 1332
Query 1117 AAACCATTTTTGTTGAACCCACGTCCCTATCTGCTTCCACCTATGCCAGGACCACCATGTAAAGTATTCATACT 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAACCATTTTTGTTGAACCCACGTCCCTATCTGCTTCCACCTATGCCAGGACCACCATGTAAAGTATTCATACT 1406
Query 1191 TGGACCTCAATATTCAGGGAAAACAACACTTTGCAATATGCTTGCAGAAAATTACAAAGGAAAGGT----GACT 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1407 TGGACCTCAATATTCAGGGAAAACAACACTTTGCAATATGCTTGCAGAAAATTACAAAGGAAAGGTAGTCGACT 1480
Query 1261 ------AAC----------------------------------------------------------------- 1263
|||
Sbjct 1481 ATGCCCAACTTGTTCAGCCACGTTTTGATAAAGCCCGTGAAACATTAGTAGAAAATACCATAGCTGAGGCCACT 1554
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 1555 GCAGCAGCAATTAAAGTTGTGAAAGAAAAGCTTCTCAGGGAACTGCAAGCTAGAAAACAAGCTGAAACAGCTTT 1628
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 1629 AAGAGAATTTCAAAGGCAATATGAAAAAATGGAGTTTGGAGTATTCCCAATGGAGGCAACACACTCATCAATTG 1702
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 1703 ATGAAGAAGGGTACATTCAAGGCTCCCAAAGGGACAGAGGCAGCTCTTTAGTGGACACCGAAGAAGCCAAAACA 1776
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 1777 AAGTCAGAAAATGTCCTCCATGATCAAGCTGCTAAAGTTGATAAAGATGATGGAAAAGAAACTGGTGAAACATT 1850
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 1851 CACATTTAAAAGGCATTCTCAAGATGCTAGTCAAGATGTAAAGTTGTATTCAGATACAGCCCCAACAGAAGACT 1924
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 1925 TGATAGAAGAGGTAACTGCAGATCATCCAGAGGTTGTGACCATGATTGAAGAGACTATAAAAATGTCACAGGAT 1998
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 1999 ATAAACTTTGAACAGCCATATGAAAAACATGCTGAAATCTTACAGGAAGTCCTTGGAGAGGTAATGGAAGAAAA 2072
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2073 CAAGGATAGGTTTCCTGGTGCCCCAAAATATGGAGGCTGGATTGTGGACAACTGCCCTATTGTAAAAGAATTGT 2146
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2147 GGATGGCCTTAATCAAGAAAGGAATTATACCTGATTTGGTCATCTATTTATCAGATACAGAAAACAATGGAAAA 2220
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2221 TGTTTATTTAATAGAATATATTTACAGAAGAAATCTGAAATTGACTCTAAGATTTTAGAAAGATTATTAGAAGA 2294
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2295 ACTACAAAAGAAAAAAAAAGAAGAAGAAGAAGCAAGAAAAGCCACAGAAGAGGAATTGAGACTCGAAGAAGAAA 2368
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2369 ATCGAAGGCTACTGGAACTTATGAAAGTGAAGGCAAAAGAAGCTGAAGAGACTGATAATGAGGATGAAGAGGAG 2442
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2443 ATTGAAGGTGATGAGTTGGAAGTTCACGAAGAGCCTGAGGCATCTCACGATACCCGAGGGTCATGGTTACCTGA 2516
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2517 GGAGTTTGAAGCATCTGAGGTCCCTGAAACTGAGCCTGAAGCAGTATCTGAGCCTATCGAGGAAACTACAGTGG 2590
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2591 AAACAGAAATCCCAAAAGGATCCAAAGAGGGCCTGGAAATTGAAAAATTATCTGAAACAGTTGTACTACCTGAG 2664
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2665 TTTCCAGAAGACTCTTATCCTGATGTTCCCGAAATGGAGCCATTTAAAGAGAAGATTGGTTCTTTCATCATCCT 2738
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2739 CTGGAAACAGCTAGAAGCAACAATTAGTGAGGCTTACATTAAAATTTTAAACTTGGAGATTGCTGACAGAACTC 2812
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2813 CACAGGAATTACTTCAAAAAGTAGTTGAGACTATGGAAAAACCATTTCAATATACTGCATGGGAGTTAACTGGG 2886
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2887 GAAGATTATGAGGAAGAAACAGAAGACTACCAGACTGAAGCAGAGGTTGATGAGGAGCTAGAGGAAGAGGAAGA 2960
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 2961 GGAAGAGGGTGAAGATAAAATGAAGGAGAGAAAGAGGCATTTGGGAGACACAAAACACTTTTGTCCGGTGGTCC 3034
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3035 TCAAAGAAAACTTCATCCTGCAACCAGGAAACACAGAAGAAGCAGCCAAGTATCGAGAAAAGATCTACTACTTT 3108
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3109 TCAAGTGCTGAGGCTAAAGAAAAGTTTTTGGAGCATCCTGAGGATTATGTGGCTCATGAAGAACCATTGAAGGC 3182
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3183 TCCTCCATTAAGAATATGCCTTGTCGGCCCCCAGGGCTCTGGCAAAACTATGTGTGGAAGACAGTTGGCAGAAA 3256
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3257 AATTAAACATTTTTCACATTCAGTTTGAAGAAGTTCTTCAAGAAAAACTACTACTCAAAACTGAAAAGAAAGTG 3330
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3331 GGACCTGAATTTGAGGAAGATTCTGAGAACGAGCAAGCTGCCAAACAAGAACTTGAAGAGCTTGCAATTCAGGC 3404
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3405 CAATGTCAAAGTTGAGGAAGAAAATACAAAAAAGCAGCTTCCAGAAGTACAACTTACAGAAGAAGAAGAAGTAA 3478
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3479 TCAAATCAAGTCTAATGGAAAATGAGCCCTTGCCTCCTGAAATTCTTGAAGTAATTCTTTCTGAGTGGTGGCTT 3552
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3553 AAGGAACCAATACGTTCCACAGGTTTTATATTAGATGGTTTCCCACGATATCCAGAAGAGGCCCAGTTTTTGGG 3626
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3627 AGATCGTGGATTTTTCCCAGATGCAGCTGTTTTTATACAAGTTGATGATCAAGATATTTTTGATCGCCTCCTTC 3700
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3701 CTGCCCAAATTGAAAAGTGGAAACTAAAACAAAAGAAGAAATTAGAAAGGAAGAAACTGATCAAAGACATGAAG 3774
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3775 GCAAAAATCAGGGTTGATACGATTGCTAAAAGAAGGGCTGAACTTATATTAGAGAGAGATAAAAAAAGGAGGGA 3848
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3849 GAATGTTGTTAGAGATGATGAAGAGATTAGTGAGGAAGAACTTGAAGAAGACAATGATGATATTGAAAACATCC 3922
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3923 TTGAAGATGAGTTTCCAAAAGATGAGGAAGAGATGAGTGGCGAGGAAGATGAAGAACAGGAAACTGATGCAATT 3996
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 3997 GAGCGCCTGAGAGGTGAACTAGGAGAAAAATTTGAAGCAGATACACATAATTTACAAATAATACAGGATGAACT 4070
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4071 TGAGAGGTATTTGATACCAATAATTTCCATTAATGGAGCTCGGAGAAATCACATTGTACAATATACATTGAATA 4144
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4145 TGAAACTGAAACCACTGGTGGAAAATCGTGCAAGCATTTTTGAGAAATGTCATCCAATACCAGCACCCCTTGCC 4218
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4219 CAGAAAATGCTCACCTTTACCTACAAGTATATAAGCTCATTCGGCTATTGGGACCCTGTAAAGCTAAGTGAAGG 4292
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4293 AGAGACAATCAAGCCAGTTGAAAATGCAGAGAATCCAATTTATCCTGTAATCCATCGTCAGTATATTTATTTTT 4366
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4367 TATCTAGTAAAGAAACAAAAGAAAAATTTATGAAGAACCCAATCAAATATATCCGCCAACCCAAACCTAAGCCT 4440
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4441 ACTGTGCCCATTAGGATTATAATTGTGGGGCCTCCAAAATCTGGGAAAACTACAGTTTTATGTTTTTCAGTTGC 4514
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4515 CAAAAAAATTACAAGTGAATATGGGTTAAAGCATTTATCAATAGGAGGAGCTTTGCGTTATGTACTAAACAATC 4588
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4589 ACCCGGAAACAGAGCTGGCACTTATGTTAAATTGGCATCTTCATAAAGGAATGACAGCACCTGATGAACTGGCT 4662
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4663 ATTCAAGCCTTAGAACTTTCTCTGATGGAAAGTGTGTGCAATACTGCAGGATTAACAGCACCAGTTGAACACAA 4736
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4737 TATTCAAGGTACTGTGGGAGTTATCTGTCAAATTCTGCCAAAATCTATCTCCAGCATGCTGAGTGTAGAAATTC 4810
Query 1264 -------------------------------------------------------------------------- 1263
Sbjct 4811 AGAGCTCTCTCCTACGCCCACCTTCTGAACTGTGTTTGGATGTGTCCTGCCCACCTCATGGCTCTTGGCCTGAC 4884
