Nucleotide Global Alignment

Description

Query:
TRCN0000473708
Subject:
XR_002958934.1
Aligned Length:
4161
Identities:
156
Gaps:
3981

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCCGGGGAGGGGGAGGGGGAGGCGGAGGGGGAGGGGCAGAAGAAGGGGGCAAGGAGGGCAGAGAGATGAGCGAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAAGAAAGGAGGGGTGCGGGAAAGGAGGAGAGGAAGGAGCGGTGGGAGGAGGAGGAGGGGTGCGGGAGAGAAGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCTGAGGGAGAGGCGGAGGGAAACCGCACCCCTGCCTCTTTCCTGGGCCGAGGCCAGCCGGGGAGGAAATGTTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAATGGGCGAAGTGCACATCCGCCTCCAGGCCTAAGGGGTGTACGGGTCAGGCCGCACCGACCCCGCCCTTCCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  AGCCCTTCCTGCCAGACCTCTGCCTCCGATGGGCGAGCCCGGTTGCTGGGAGGCGGTTCACTATGGAGCCTGGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCCTCCCCACAGTTCAGCCCGCCGGAGGCGTGTGCGCTTCCAGATGAGAGCACTTGTTCACTGAATGACCGCAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCATTGTTAATGGGTGCGTGTGTACAGTTCTGGGCACATACCAACATGCACGGATGCATGTTAACCTGCTTTGT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  ATGGAAGAAACGGGGTCAGGATATCATAAAAAGAATTAATGGGTAATCAGTATTCATCAAATGCCAAGATCTAG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTCTGAGCACTTTGCAAATATTAATTTAATCACCACGAACCTCAGTAAAGTTTATTACTATTACTCGCATTTTT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CAGATGAGGCGCCTAAGGCACAGAGAGGTTAAGTAGCCTGCCCAGGATCACACAGCTACTAAGTACAGAAGTCA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAATTTGAGCCTGACTCCAGAGCTCATAAGGTTAACAACGAGGCCTCCCACTTTTATATGCGTATTATTCCATG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AATTACTGTTTACACTAAGAATATGTTCTTTTCTGCAACCAATGGAAGATTCCTAGAAGAGGAACTACTGGCTA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TGTGGCATTGAGATTTTTCTTTTTTCTTTTTTTTTCTGAGATGGAGTCTAGCTCTGTCGCCCAGGCTGGAGTGC  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGTGGCACGATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGGTTCTCCTGCCTCAGCCTCCCAAAT  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  ATCTGGGATTACAGGCCTGCCACTATGCCCAGCTGATTTTTGTATTTTAAGCAGAGATAGGGTTTCACTGTGTT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  GGCCAGGCTGGTCTTGAACTCCTCACATTGTGATCCACCCGCCTCGGCCTCCCAAAGTTCTGGGATTACAAGCG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TGAGCCACCGCGCCTGGCCGTGTGTTTGAGATTCCTAGAGACATTAGTAAAACCCTCCAAAAGAGTGGGGACCT  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TACACCAGCCTGCCGGTTCAAGCTCCATACTGGACCTCCACCTCCCCAACCCCCACCCCCACCCCACCAGAAAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GGACCCTCCATCCCCTTCAGGTCATAGAGTGAGGAAGAGGGAAGCTTCAACAGGCCCAGATGGCCCTGGTAATG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  GGCACGGTGACATTTGGGCAGAGAACCCCAGGGCCCTGCATCTGCAGACCTGGGACAGGCAGAGAATGTCCAAT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  GGGGGTGCTAGTGGCATTGCCTGGCCATGACTCTGTCCAGCTGTGGCATCATGTCCCATGGCCAAAGTGTCCAA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GCAAGCCTGCTTCTGCCATTGACCTAGGGAGGCCTCTTGACACCTGCTCATTTTCCAAGCCTGTTCCTCCTGCA  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TCCTCAAGATTCGGAGTGCCCTCCAAAATAAGATCTTTTTCTGTAGTTGTTACTATGGGTTAAGAACCCTCCTG  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TCTGATACATACAACTGATTACAAACTTTTAATTTTTGCCAATCTGATAAGCAAAAAAAAAGAAAGTAGTTCAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GGATTTAGTTTACATTTCCTTTTTAACAGGGAGGTTGGGTAGAGACTTCTTGGTTTGCTCATGCCTGTAATCCT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGCACTTTGGGAGGCTAAGGTAGGAAGATCGCTTGAACTCAGGAATTCAAGCCAACCTGGGCAACATAGCAAGA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  CCTCACCTCCACTAAAGGGAAAAAACAATCCATGTTCCTTTTCTTCCAACCCAACAGATCTGTGGCTGGGCAGC  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  AGCTGCTGAGCTCAACTACAATTCCAGCCTGCTTTACAGTTAGGCTTGTCCACAGGACCAAGTTCTCAGTGACA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  GAGTAAGAGCAGGCCTGTGATAGGAGCCTCTTCTGTACCTCGGCCTCCAAGATGCCTAGAATCTGGCTGTGGCA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GTGCCCAAGGGGAGGCGAGCAGCAGGAGAGAAGGGTCCTGGGGTTTGGGGGGACCAGGAGGAGCAGAGCTGCTG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTCAGCTCAGATCCATAACCTGAGAAAGAAAGAGGGATGGCACATTTTATGTGTTAACTTAAATATCTGGCTAC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  ATCGCTCAGATATTTGATTAGACACTATTCTAGATGTTTTTATGAAGGTATTGATTAATTGATTGATTGATTGA  2368

Query    1  -----------------------------ATGCAGTGGCGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGG  45
                                         .|||.|||||.|.||||..|||||||||||||||||.||||||||
Sbjct 2369  GACAGTCTCACTCTGTTGCCCAGGCTGGAGTGCGGTGGCACAATCTTGGCTCACTGCAACCTCCACCTCCCAGG  2442

Query   46  TTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTGGGATTACAGGCGTGTGCCACTACACTCAACTAATTT  119
            ||||||.||||||||||||||.||||||..|||||||||.|||||||||.||||||||.|..|....|||||||
Sbjct 2443  TTCAAGTGATTCTCGTGCCTCAGCCTCCCAAGTAGCTGGCATTACAGGCATGTGCCACCATGCCTGGCTAATTT  2516

Query  120  TTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAG-------  186
            ||||||||||||.|||||.|||||||||||.||||||||||||||||      ||||||||||.|||       
Sbjct 2517  TTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGT------CTCCTGACCTGAAGTGATCTG  2584

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2585  CCCACCTTGGCTTCCCAAAGTGCTGGGATTACAGGCCTGAGCTACCACAACCGGTGAAAGTACTTTTTAAGATA  2658

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2659  AGATTAGCATTTAAATCAGAAGATTTTGAGTAAAGCAGATTATTCTCCACAATGTGGGCAGATCTCATCCCATC  2732

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2733  AGTTGAAGACCTTAAGAGAAAAGAGACTGACCTGCTCTGAGCAAGGAGGAATTCTGCTGGCCAACTGCTTGTGA  2806

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2807  ACTCCAACTTGTAATATCAGTCTCCAGCCTACCGGCTTACTCTGCAGATTTTGGATTTGCCAAGCCTCCACAAC  2880

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2881  CGCAGAAGCCAATTCCTTAAAATAAATCCCTTACAACAGTTCCCTAAAATAAATTCTTCAAAATTCCTTAAAAT  2954

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2955  AAATGTGTGTGCATGTGTGTCTGTGTATATATATAGCCTATGTAATGTCTAATATAGATCTATAATATATATTA  3028

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3029  GATAAATATACACATACTTATCATATATATATGTGTGTGTGTGTGTGTGTGTGTTTCTCCTATTGGTTCTGTTC  3102

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3103  TCTGGAGAACCTAATACAGAAACAAATCTGTTTATTCTTCTAGCCTCTGTATCATCAGGCCTCTTTGTTAGAGC  3176

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3177  AGGTGAGCTTTACCCTAACTAATTCAGAGGTTGATTCGTTTTCATGCATGTAGATACTTGTCATTTAGCTTCTA  3250

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3251  TTATCTGCCTGTATTTTAAGGTTCTTTGTCTTAAAATGTTATGACTCCAGGAATGTTATATATTAAGTATATTA  3324

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3325  ACCTTTTGACTATTATATATCTTGCAAACATCTTGTAATCAGTCACTTGTCTCTTTATTTTATTTGGAGCGGCT  3398

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3399  TTCAACCTAGAGCAGTGGTCCCCAAACCCGGGGCTGCAGACTATTCCCTGTCTGTGGTTTGTTAAGAACCAGGC  3472

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3473  TACATAGCAGAAGATGAGTAGCAGGCGCGGGAGCATGACCACCTGAGCTCCGCCTCCTGTCAGACCAGCAGCGA  3546

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3547  CATTAGATTCTCATAGGAGCACAAACCCTACTGTGAACTGTGCGTATGAGGGATCTAGGTTGCACATTCCTTAA  3620

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3621  AAGACTCTTAATGCCTGATGATCTGAGGTGGAACAGGTTCACCCTGAAACCATCCCCCGCTCAGCCTGTGTCTG  3694

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3695  TGGAAAAATTGTCTTCCATGAAACTGGTCCCTGGTGCCAAAAAGGCTGGGGACTGCTGACCTACAAGATATATT  3768

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3769  AGTTATGACTCTTGGTGCATACTCTTGACAGAAATCCCACTCAACCTAGTATAATGCAGAGGACAGTTCACGGA  3842

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3843  GCAACTCAAATAATTGCCACTTTTACAATATTGAAGCTTCCTACGGGAAACATAATACATCTCTCAATTTATGT  3916

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3917  CCTTTAATACGATTAAACATTTTTCTTCATGTAGGTTCTCCAGAATTTTGGTTATGCCTATGCCTAGATTATTT  3990

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3991  ATGATTGTTGTTGGTATTGCAAATGTCCTCTCCTATTGATTATTTAATGGTATCTATGGAAAGTATTGATTTTT  4064

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 4065  GTGTATTTGCTCTGTGCCCACTTGCCATCTAACTGGTTGTTATATTTTATTGAACCTTTCAAAGGATATGAATT  4138

Query  187  -----------------  186
                             
Sbjct 4139  ATGCTGATTTTAATGTC  4155

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