Nucleotide Global Alignment
Description
- Query:
- TRCN0000475751
- Subject:
- XR_385968.2
- Aligned Length:
- 4275
- Identities:
- 1390
- Gaps:
- 2823
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGCAGGGAACTTGAACCGGTCCAGCCTGTTTAAACCGAAAGGACAGAGATCCTGTCTGTTCAATGTAAAAAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAAAAAGAAGAAGAAGAAAAAAATCACATCAGACCGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAAGAAGAAGAGGGAGAGAGAGAGAGAGAGAGAGAAGAGAGAAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGAGAGAGAAGAGAGAGAGAAGAGAGAAATAGAACGAGAGCCCAGAGCAGAGCAAGGTGTAGGAAACCAAAGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGAGAACCCGAGTGTGTGCGTGTGTGTATGAGTGTGTGTGAGTGTGTGTGTGTGTGTGCGCGCGTGTGTGAGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGAGAGTGTGTGTGCGTGTGTGTGTGTGTGTGAGTGTGTGTGT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GTGCGTGTGCGTGTGTGAGCGCGAGCGAGCGAGTGAGGGAGAGGAGCGAGAGAGTGCGAGCGAGAAAGAATAAA 518
Query 1 -----------------ATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCAAGCCTCAGT 57
|||||||||||||||||||||||||||||||||||||||||||||||.|||||||||
Sbjct 519 AGGAAAGATTTTTCTCTATGTATATAAAGATGGCCACGTTAGCAAACGGACAGGCTGACAACGCGAGCCTCAGT 592
Query 58 ACCAACGGGCTCGGCAGCAGCCCGGGCAGTGCCGGGCACATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC 131
|||||||||||.|||||||||||||||||.||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 593 ACCAACGGGCTAGGCAGCAGCCCGGGCAGCGCCGGGCATATGAACGGATTAAGCCACAGCCCGGGGAACCCGTC 666
Query 132 GACCATTCCCATGAAGGACCATGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGCAACCTGGATGAGAAGG 205
|||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 667 GACCATTCCCATGAAGGACCACGATGCCATCAAGCTGTTCATTGGGCAGATCCCCCGAAACCTGGATGAGAAGG 740
Query 206 ACCTCAAGCCCCTCTTCGAGGAGTTTGGCAAAATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG 279
|||||||||||||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCTCAAGCCCCTCTTCGAGGAGTTCGGCAAGATCTACGAGCTTACGGTTCTGAAGGACAGGTTCACAGGCATG 814
Query 280 CACAAAGGCTGCGCCTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA 353
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACAAAGGCTGCGCTTTCCTCACCTACTGCGAGCGTGAGTCAGCGCTGAAGGCCCAGAGCGCGCTGCACGAGCA 888
Query 354 GAAGACTCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCT 427
||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAGACCCTGCCCGGGATGAACCGGCCGATCCAGGTGAAGCCTGCGGACAGCGAGAGCCGAGGAGGTAGTAGCT 962
Query 428 GCCTGCGCCAGCCCCCTTCAC---ATAGAAAACTCTTCGTGGGCATGCTCAACAAGCAACAGTCCGAGGACGAC 498
||||||||||||||||||||| |||||||||||||||||||.|||||||||||||||||.||.|||||||||
Sbjct 963 GCCTGCGCCAGCCCCCTTCACAAGATAGAAAACTCTTCGTGGGTATGCTCAACAAGCAACAATCTGAGGACGAC 1036
Query 499 GTGCGCCGCCTTTTCGAGGCCTTTGGGAACATCGAGGAGTGCACCATCCTGCGCGGGCCCGACGGCAACAGCAA 572
|||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||.||||||||||||||
Sbjct 1037 GTGCGCCGCCTCTTCGAGGCCTTCGGGAACATCGAGGAGTGCACTATCCTGCGCGGGCCGGACGGCAACAGCAA 1110
Query 573 GGGGTGCGCCTTTGTGAAGTACTCCTCCCACGCCGAGGCGCAGGCCGCCATCAACGCGCTACACGGCAGCCAGA 646
||||||||||||||||||||||||||||||.||||||||.||.||||||||||||||.|||||.||||||||||
Sbjct 1111 GGGGTGCGCCTTTGTGAAGTACTCCTCCCATGCCGAGGCACAAGCCGCCATCAACGCTCTACATGGCAGCCAGA 1184
Query 647 CCATGCCGGGAGCCTCGTCCAGTCTGGTGGTCAAGTTCGCCGACACCGACAAGGAGCGCACGATGCGGCGAATG 720
|||||||.||||||||.|||||.||||||||||||||.||.|||||.||||||||||||||.|||||.||.|||
Sbjct 1185 CCATGCCTGGAGCCTCCTCCAGCCTGGTGGTCAAGTTTGCAGACACTGACAAGGAGCGCACAATGCGACGGATG 1258
Query 721 CAGCAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCTTTCGGGGCCTACGGCGCCTACGCTCA 794
|||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.|||||
Sbjct 1259 CAGCAGATGGCTGGCCAGATGGGCATGTTCAACCCCATGGCCATCCCCTTCGGAGCCTATGGCGCCTATGCTCA 1332
Query 795 GGCACTGATGCAGCAGCAAGCGGCCCTGATGGCATCAGTCGCGCAGGGCGGCTACCTGAACCCCATGGCTGCCT 868
|||||||||||||||||||||.|||||.||||||||.||||||||.||.|||||||||||.|||||||||||||
Sbjct 1333 GGCACTGATGCAGCAGCAAGCAGCCCTCATGGCATCGGTCGCGCAAGGAGGCTACCTGAATCCCATGGCTGCCT 1406
Query 869 TCGCTGCCGCCCAGATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCGGCCGCACCTATGACCCCAACC 942
|||||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 1407 TCGCTGCCGCCCAAATGCAGCAGATGGCGGCCCTCAACATGAATGGCCTGGCAGCCGCACCTATGACCCCAACC 1480
Query 943 TCAGGTGGCAGCACCCCTCCGGGCATCACTGCACCAGCCGTGCCTAGCATCCCATCCCCCATTGGGGTGAATGG 1016
||||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.||
Sbjct 1481 TCAGGTGGCAGCACCCCTCCAGGCATCACTGCACCAGCTGTGCCTAGCATCCCATCCCCCATTGGGGTGAACGG 1554
Query 1017 CTTCACCGGCCTCCCCCCACAGGCCAATGGGCAACCTGCTGCGGAAGCTGTGTTCGCCAATGGCATCCACCCCT 1090
||||||.|||||||||||.||||||||||||||.||||||||||||||||||||.|||||||||||.|||||||
Sbjct 1555 CTTCACGGGCCTCCCCCCTCAGGCCAATGGGCAGCCTGCTGCGGAAGCTGTGTTTGCCAATGGCATTCACCCCT 1628
Query 1091 ACCCAGCACAGAGCCCCACCGCCGCGGACCCCCTGCAGCAGGCCTACGCCGGAGTGCAGCAGTATGCAG---CA 1161
||||||||||||||||||||||.||.|||||||||||||||||||||||.||||||||||||||||||| ||
Sbjct 1629 ACCCAGCACAGAGCCCCACCGCAGCCGACCCCCTGCAGCAGGCCTACGCTGGAGTGCAGCAGTATGCAGGACCA 1702
Query 1162 GCTGCCTACCCTGCTGCCTATGGTCAGATAAGCCAGGCCTTTCCTCAGCCGCCTCCAATGATCCCCCAGCAGCA 1235
|||||||||||||||||||||||||||||.||||||||||||||||||||.||.||||||||.||||||||.||
Sbjct 1703 GCTGCCTACCCTGCTGCCTATGGTCAGATTAGCCAGGCCTTTCCTCAGCCACCGCCAATGATTCCCCAGCAACA 1776
Query 1236 GAGAGAAGGGCCCGAGGGCTGTAACCTGTTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGC 1309
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GAGAGAAGGGCCCGAGGGCTGTAACCTGCTCATCTACCATCTGCCCCAGGAGTTTGGGGACGCTGAGCTGATGC 1850
Query 1310 AGATGTTCCTCCCTTTC--------------------------------------------------------- 1326
|||||||||||||||||
Sbjct 1851 AGATGTTCCTCCCTTTCGGTAATGTCATCTCCTCGAAAGTGTTTGTGGATCGGGCGACTAACCAAAGTAAATGC 1924
Query 1327 ---GGCTTCGTGAGCTTCGACAACCCGGCCAGCGCGCAGACCGCCATCCAGGCCATGAACGGCTTCCAGATCGG 1397
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.||
Sbjct 1925 TTTGGCTTCGTGAGCTTCGACAACCCGGCCAGCGCACAGACCGCCATCCAGGCCATGAACGGCTTCCAGATAGG 1998
Query 1398 CATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTAC------------------- 1452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 CATGAAGAGGCTCAAGGTGCAGCTGAAGCGGCCCAAAGACGCCAATCGCCCGTACTGAGCGCCGGCGGGAGCGT 2072
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2073 CCCCCGGGGGAGACCAGGACTCGCACAGGGCCAGTCAAATCCACCACAGTCTCGCGCTGAGCTAGGAATAAAGT 2146
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2147 TCACGTAATCACATGAGAGTGGAGAAAAGTCCCCCATCCGGCAGGATGCTGAACGGGCTACATTAAAAACAAAC 2220
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2221 CTCTTTCTCTCTCTATTTATAAATGAGAACTGTTGGACGACACCTTTGACATATCAGCCAATACCAATCAAGCT 2294
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2295 GACGACTCCAGACACTCCGTGTGACTGTAACATTTCTTCAAGGAAAGTATAGCGTCTATGGAGTGCAGAGGGCA 2368
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2369 TGTGTTTGGGGAAAAATATACATGACATAAAGATGACGACGAAGAAGAAAAATGATATAAAACAAACAAAAAAC 2442
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2443 CCGCGACTTTAAAATGAAATAACGTGAGCCCAGATGGGGAAGCTGAAGGGCTGGGCACTAGGAGGAGATGCTGC 2516
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2517 TGCCAACCGATCCTGGGGCTTTTCCCGCCCGTAGGCGCCTGAGGCAGGCAGGGGCAAGTGTACAATGGGGCCTA 2590
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2591 GTCCCCAGCAGGCGGCTGGGAGGCCGCCACTGAGCATCTCTATTTGTCATTCCTTTAGCTATTTAGGGACCAAA 2664
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2665 GGACCAAACTTTTTATTGCAGATGTGTAGCTCTGTCAATTAGAGGTGGAATGGAGACCAACCTCCTTCCTGCCT 2738
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2739 CCTGGCTGTTCTTGAAACAGCTTAGAGCGATTCTATGAAAATGTAATAAAAAATAAAAATAAAAAAAAAATAAA 2812
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2813 AAAAGAACAAAAAAAACAAGGAAAAAAAATAATGCTTCAACGCTTTTAAAACAGCAAGATACTAGTTCTTTGAT 2886
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2887 ACTTTGAGAGGCGCTTTGATTACCCCGATTGAAGTCTCTGAAACTTTCCTATGGTTTTCTGTATTATATGTCTG 2960
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 2961 GATGGAGCTGTTTAGATACATTGATTGGTGGATATTTGGAGAAAGCAACAAAGATATTAAGTCATTAACCATGA 3034
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3035 AGAGAACACGAGGGGAACCAGGGGACTTCGAAGGCAAGGTAATTGTTGTGAAAAGTCTGTAAATGCTTCTAATT 3108
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3109 CTTCCCCCCTCTTAAAATCATAATAGTTGTACAGAATTTTAAAAGGAAAAGTTTAAAATACCTATATCATAGAA 3182
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3183 GAAAAAAAAATTAGAGGAAAGCAAAAAAATAAAAAAAAAAAGGAAAAAAAAACCTTATAGAAGTTAGCATTATG 3256
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3257 CTAAAATCCCAGATGTTGTAGGACTGTACTTCTGTAGAGTTTAGACTGAGCATCGATCCCGTCTCCCCGCGAGT 3330
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3331 GCTGTCGGACTCCGTCCCCAAGGGCCAGGCCGGACTGTCCAGACCTGCAGGCTCCGGCCAGAAGCGCCGCTCCG 3404
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3405 GAAGCGTCCTGCCGCCTCTCGCTTTGCCAGCCTGGGAGCCGCGCGCATGCGCGCTCTCTCTGCCCTTCTCACCT 3478
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3479 CTGCTTCACTCGCCTTCTGTGCTTGTTCCGGAGACTTTCCAGGCCAGGGAGAACTGGGAACTTCTCATCTTCAA 3552
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3553 ACAACTAGACAACACACACACACACAAAACCTTAAACAAGAGAGAGAAAACAAACAATCTTTGAAGAATTTCTG 3626
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3627 AAACTGTTTACAAGGAATTTTGAAAAACAGGGATGTTTAAATGATGCTGGCTCTGTTTTTCTGTAAATAAATTT 3700
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3701 GCATATTTTGTAGGACTTTTAATTGTAATGATAGAGAAAAAACAAGGAAAACTATTTAATGAAAGCACGATATT 3774
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3775 TATCTTTGGTAAATGACTTTAGAGCAGTTAAAGACATTGCTTAAAAACTCAGAATCAGAAAAACACTGAATTAT 3848
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3849 TTAAGAACACATATATTTTAAAGTATAACATATTTATTATAATTTATTTGCACCTTGGGAAGACTTGCTTTGCA 3922
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3923 TTCTGCCTCAAGAGCTTCTCATTGATGTCCATCTGGAGGCCAGGGGGGTCTTGGAACTACCATTTTTTTTTCCT 3996
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 3997 TTAGATCAACAAAATTCTGGTTGCCCTCAGGCCTCCTTCCTTTTCTTTCCATCTATTTTGTTGTTGTTTTACTT 4070
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 4071 CATTTAGTTTTCTTTTTCTTTCTCTTGACTCCTCCTTTTAGGATGTCCAGATGTTGTAAAAAAACAAAAACAAA 4144
Query 1453 -------------------------------------------------------------------------- 1452
Sbjct 4145 AAACCCAACAGCTGCAGTTCAATACAACTGCTCTTTTCACACGACTCCCTAAACTCCTTGTAACCTTCTGTAAC 4218
Query 1453 --------------------------------------------------------- 1452
Sbjct 4219 TATTGGATGACGCTTTCTCCAGCTTAGCCCTAAATAAAGCACAGTTTAAAAAAAAAA 4275
