Nucleotide Global Alignment

Description

Query:
TRCN0000476860
Subject:
XR_001744740.2
Aligned Length:
3826
Identities:
892
Gaps:
2842

Alignment

Query    1  ----------------------------------------------------------------ATGTCTTCCC  10
                                                                            .|||.|||| 
Sbjct    1  TTTTTTTTCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCC-  73

Query   11  CGTTGCAAAGAGC-------TGTGGGAGATACCAAGAG---------GGCCTTTTC----------TGCATCTT  58
                     ||||       |.|||..|.|.||.||.|         |||..||||          ||  ||||
Sbjct   74  ---------GAGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCGTTGGTG--TCTT  136

Query   59  --CTAGTTCC-----------TCTGCCAGTCTAC--CCTTTGATGACAGGGACTCAAACCATCCCTCAGAGGGG  117
              |...||||           ||||.|.||.|.|  ||.|||.||.|.||.||.|  .||| |||||       
Sbjct  137  GGCGGTTTCCGACCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGC--GCCA-CCCTC-------  200

Query  118  AATGGCGACT--CTTTGTT-------AGCTGATG----------------AAGACACTGACTTTGAAGACAGCT  166
                   .||  |||||.|       .||.||||                ||||.|.||| |||||.|||||||
Sbjct  201  -------TCTTGCTTTGGTTGCGCCATGCCGATGTACCAGACAAGAAGACAAGAAAATGA-TTTGAGGACAGCT  266

Query  167  TGAATCGCAATGTGAAGAAGAGAGCAGCAAAACGACCACCGAAAACAACACCGGTGGCAAAACATCCAAAGAAA  240
            |.||||||..|||||||||||.|||||||||||||||||.|||||||||.||||||||||||.|||||||||||
Sbjct  267  TCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAA  340

Query  241  GGGTCCCGAGTGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGTGAA  314
            |||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct  341  GGGTCCCAAGCGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGCGAA  414

Query  315  AGCCGCCAAAAGTGACATGCAGTCTTTGGTAGATGAGTGGCTGGATAGCTACAAGCAAGACCAGGATGCAGGAT  388
            |||.|||||||||||||||                                                       
Sbjct  415  AGCTGCCAAAAGTGACATG-------------------------------------------------------  433

Query  389  TTCTGGAGCTTGTTAACTTTTTCATCCAATCTTGCGGATGTAAAGGCATTGTGACCCCTGAGATGTTCAAGAAG  462
                                                                                      
Sbjct  434  --------------------------------------------------------------------------  433

Query  463  ATGTCCAACTCAGAGATCATCCAGCACCTAACAGAGCAGTTTAATGAGGACTCGGGGGACTACCCTCTCATAGC  536
                                                                                      
Sbjct  434  --------------------------------------------------------------------------  433

Query  537  TCCAGGTCCATCCTGGAAGAAGTTCCAGGGCAGCTTCTGTGAATTTGTGAGGACATTGGTCTGTCAGTGCCAGT  610
                                                                                      
Sbjct  434  --------------------------------------------------------------------------  433

Query  611  ACAGCCTCCTCTATGATGGCTTCCCTATGGACGACCTCATCTCCCTGCTCACTGGCCTCTCAGACTCACAAGTC  684
                                                                                      
Sbjct  434  --------------------------------------------------------------------------  433

Query  685  CGCGCCTTCCGTCACACTAGCACCCTGGCTGCTATGAAACTGATGACCTCCCTGGTAAAAGTTGCCCTCCAACT  758
                                                                                      
Sbjct  434  --------------------------------------------------------------------------  433

Query  759  GAGTGTGCACCAAGATAACAATCAGCGTCAGTATGAGGCTGAAAGAAACAAGGGGCCAGGGCAGAGGGCACCTG  832
                                                                                      
Sbjct  434  --------------------------------------------------------------------------  433

Query  833  AGCGGCTGGAGAGCCTGTTGGAGAAACGCAAAGAGCTCCAAGAGCATCAAGAGGAGATTGAGGGGATGATGAAT  906
                                                                                      
Sbjct  434  --------------------------------------------------------------------------  433

Query  907  GCCCTCTTCAGGGGTGTCTTTGTTCATCGGTACAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGA  980
                                            ||||||||||||||||||||||||||||||||||||||||||
Sbjct  434  --------------------------------CAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGA  475

Query  981  AATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGACTC  1054
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  476  AATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGACTC  549

Query 1055  TGCATGATAAGCACCGAGAAGTCCGCCTGAAGTGTGTGAAGGCCCTGAAAGGGCTGTACGGTAACCGGGACCTG  1128
            ||||||||||||||||||||||||||.|||||||.||||||||.||||||||||||||||||||||||||||||
Sbjct  550  TGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTG  623

Query 1129  ACCACACGCCTGGAGCTCTTCACCAGCCGCTTCAAGGACCGGATGGTTTCCATGGTCATGGACAGAGAGTATGA  1202
            |||.|||||||||||||||||||..||||||||||||||.||||||||||||||.||||||||||||||||...
Sbjct  624  ACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAG  697

Query 1203  TGTGGCAGTGGAGGCTGTCAGATTACTGATACTTATCCTTAAGAACATGGAAGGGGTGCTGACGGACGCGGATT  1276
            |||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||.|
Sbjct  698  TGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAGAACATGGAAGGGGTGCTGATGGACGTGGACT  771

Query 1277  GTGAGAGCGTCTACCCCGTTGTGTATGCCTCTCATCGAGGCCTGGCCTCTGCCGCAGGCGAATTTCTGTACTGG  1350
            |||||||||||||||||.|||||||.||||||.||.||||||||||||||||.|..||.|||||||||||||||
Sbjct  772  GTGAGAGCGTCTACCCCATTGTGTAGGCCTCTAATTGAGGCCTGGCCTCTGCTGTGGGTGAATTTCTGTACTGG  845

Query 1351  AAACTCTTCTACCCTGAGTGCGAGATAAGAATGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGCGCCCAGAG  1424
            |||||.|||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||.||||||||
Sbjct  846  AAACTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGAG  919

Query 1425  GACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCGA------GCTCCATGACCACGCTGCTTACTTAG  1492
            ||||||||||||||||||||||||||||||||||||||||.|      |||||..|| ||| ||||        
Sbjct  920  GACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAGAATCGGCTCCCAGA-CAC-CTGC--------  983

Query 1493  TAGACAGTCTGTGGGACTGTGCAGGGGCTCGGCTGAA-GGACTGGGAGGGTCTGACAAGC---------CTGCT  1556
                ||                     ||||  |||| |.|         |||||.||.|         |||..
Sbjct  984  ----CA---------------------CTCG--TGAATGCA---------TCTGATAAACTCACTCACACTGAG  1021

Query 1557  GC--TGGAGAAGGACCAGAACCTGGGTGATGTGCAGGAGAGCACACTGATAGAAATCCTTGTGTCCAGTGCCCG  1628
            ||  |||    ||||           |||       |||.||     ||| ||    |.||..|||  |||   
Sbjct 1022  GCCTTGG----GGAC-----------TGA-------GAGTGC-----GAT-GA----CATGGATCC--TGC---  1058

Query 1629  GCAAGCTTCAGAGGGGC-ACCCGCCTGTGGGCCGGGTCACTGGGAGGAAGGGCTTAACCTCTAAGGAGCGCAAG  1701
                         ||.| |.|||||      ||               |||||.| ||||      |||     
Sbjct 1059  -------------GGACAAACCGCC------CC---------------AGGGCGT-ACCT------AGC-----  1086

Query 1702  ACCCAAGCCGATGACAGGGTGAAGTTGACTGAGCACCTCATC-CCCCT-GCTGCCCCAGCTCCTGGCCAAGTTC  1773
            |||.||||  ||  ||||                       | ||.|| |.| |.||||||||        |||
Sbjct 1087  ACCGAAGC--AT--CAGG-----------------------CGCCACTAGGT-CTCCAGCTCC--------TTC  1124

Query 1774  TCAGCTGATGCAGAGAAGGTCACTCCCCTGCTCCAGCTTCTCAGCTGCTTTGACCTCCACATCTACTGCACTGG  1847
            ||.|.|||.|.                                                               
Sbjct 1125  TCGGATGACGT---------------------------------------------------------------  1135

Query 1848  GCGCTTGGAGAAGCACCTGGAGCTGTTCCTGCAGCAACTCCAGGAGGTGGTGGTGAAGCATGCAGAGCCAGCGG  1921
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 1922  TGCTTGAGGCTGGGGCGCATGCCCTCTACCTGCTCTGTAATCCCGAATTCACTTTCTTCAGCCGGGCGGACTTT  1995
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 1996  GCCCGCAGCCAGCTAGTAGATTTGCTGACTGACCGCTTCCAGCAGGAGCTTGAAGAGCTGTTACAGTCGTCCTT  2069
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2070  CCTAGATGAGGATGAGGTATATAATCTGGCAGCCACTCTGAAACGCCTCTCTGCCTTCTACAACACTCATGACC  2143
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2144  TGACTCGCTGGGAGCTCTATGAGCCATGTTGCCAACTCCTGCAGAAGGCTGTGGACACAGGAGAGGTTCCTCAC  2217
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2218  CAGGTTATCCTGCCAGCCTTGACTCTTGTCTATTTTTCCATTCTCTGGACACTAACCCACATTTCTAAATCAGA  2291
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2292  TGCTTCCCAGAAGCAGCTGTCGAGTTTGAGGGACAGAATGGTGGCCTTCTGTGAACTCTGCCAGAGTTGCCTCT  2365
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2366  CAGATGTGGATACTGAGATCCAGGAGCAGGCTTTTGTCTTATTAAGTGATCTACTTCTCATCTTTAGCCCTCAG  2439
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2440  ATGATTGTTGGGGGCCGTGATTTCCTTAGGCCACTTGTCTTTTTTCCTGAAGCTACTCTCCAGTCTGAGCTAGC  2513
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2514  CAGCTTCCTCATGGACCACGTCTTCATCCAGCCGGGAGACCTGGGCAGTGGTGATTCCCAGGAGGATCATTTAC  2587
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2588  AGATAGAGCGGCTACACCAGCGGCGCCGCCTCCTAGCCGGGTTCTGCAAGCTGTTGCTTTATGGGGTGCTGGAG  2661
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2662  ATGGATGCAGCCTCAGATGTTTTCAAACACTACAACAAGTTCTACAATGACTATGGTGACATTATCAAGGAAAC  2735
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2736  ATTAACTAGAGCAAGGCAGATTGACCGAAGTCATTGTTCCCGAATCCTGCTGCTGAGCCTCAAGCAGCTGTACA  2809
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2810  CAGAACTGCTGCAGGAGCATGGGCCCCAGGGCCTGAATGAGCTTCCTGCCTTCATCGAGATGAGGGACCTGGCC  2883
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2884  CGGAGGTTTGCCTTGAGTTTTGGACCCCAGCAGCTGCAGAACCGTGACCTCGTGGTCATGCTACACAAGGAAGG  2957
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 2958  CATCCAGTTCTCCTTGTCTGAGCTTCCTCCAGCTGGCTCCTCCAATCAGCCTCCAAATCTGGCATTCCTGGAGC  3031
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 3032  TCCTTTCAGAGTTTTCCCCCCGACTCTTCCATCAGGACAAGCAGCTTTTACTGTCCTATCTAGAAAAGTGCCTG  3105
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 3106  CAGCATGTCTCCCAGGCACCTGGCCATCCCTGGGGCCCAGTCACCACCTACTGCCACTCCCTCAGCCCTGTGGA  3179
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 3180  GAACACAGCAGAGACCAGCCCTCAGGTCCTCCCCAGCTCCAAGAGGAGGCGCGTTGAAGGGCCTGCCAAGCCTA  3253
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 3254  ACAGAGAGGACGTCTCCTCGTCCCAGGAAGAAAGTCTGCAGCTGAACAGCATCCCGCCCACGCCCACCCTCACC  3327
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 3328  TCCACAGCTGTGAAGAGCAGGCAGCCCCTGTGGGGGTTGAAAGAGATGGAGGAAGAAGATGGCTCAGAGTTGGA  3401
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 3402  TTTTGCCCAGGGTCAGCCCGTCGCAGGCACCGAGAGGTCAAGGTTCTTGGGTCCACAATATTTCCAGACTCCAC  3475
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 3476  ACAACCCTTCAGGTCCTGGCCTGGGCAACCAGCTGATGCGACTCAGCCTTATGGAAGAGGACGAGGAAGAAGAG  3549
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 3550  TTAGAAATCCAGGATGAGTCAAATGAAGAACGGCAGGATACAGACATGCAAGCAAGTAGCTACTCTTCCACCAG  3623
                                                                                      
Sbjct 1136  --------------------------------------------------------------------------  1135

Query 3624  TGAGCGCGGGCTGGACCTCTTAGATTCTACAGAGCTGGATATTGAGGATTTC  3675
                                                                
Sbjct 1136  ----------------------------------------------------  1135

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