Nucleotide Global Alignment
Description
- Query:
- TRCN0000476860
- Subject:
- XR_001744740.2
- Aligned Length:
- 3826
- Identities:
- 892
- Gaps:
- 2842
Alignment
Query 1 ----------------------------------------------------------------ATGTCTTCCC 10
.|||.||||
Sbjct 1 TTTTTTTTCCGAACGCCCGCAGCAGGGTCAGAAGGGAGGTGGTCGCCCTCCGTCGTGGTCTGGCGTGTATTCC- 73
Query 11 CGTTGCAAAGAGC-------TGTGGGAGATACCAAGAG---------GGCCTTTTC----------TGCATCTT 58
|||| |.|||..|.|.||.||.| |||..|||| || ||||
Sbjct 74 ---------GAGCCTTGGTGTCTGGCGGTTTCCGAGCGTTGGTGTCTGGCGGTTTCCGAGCGTTGGTG--TCTT 136
Query 59 --CTAGTTCC-----------TCTGCCAGTCTAC--CCTTTGATGACAGGGACTCAAACCATCCCTCAGAGGGG 117
|...|||| ||||.|.||.|.| ||.|||.||.|.||.||.| .||| |||||
Sbjct 137 GGCGGTTTCCGACCGTTGGTGTCTGGCGGTTTCCGACCGTTGGTGTCTGGCACGC--GCCA-CCCTC------- 200
Query 118 AATGGCGACT--CTTTGTT-------AGCTGATG----------------AAGACACTGACTTTGAAGACAGCT 166
.|| |||||.| .||.|||| ||||.|.||| |||||.|||||||
Sbjct 201 -------TCTTGCTTTGGTTGCGCCATGCCGATGTACCAGACAAGAAGACAAGAAAATGA-TTTGAGGACAGCT 266
Query 167 TGAATCGCAATGTGAAGAAGAGAGCAGCAAAACGACCACCGAAAACAACACCGGTGGCAAAACATCCAAAGAAA 240
|.||||||..|||||||||||.|||||||||||||||||.|||||||||.||||||||||||.|||||||||||
Sbjct 267 TCAATCGCGGTGTGAAGAAGAAAGCAGCAAAACGACCACTGAAAACAACGCCGGTGGCAAAATATCCAAAGAAA 340
Query 241 GGGTCCCGAGTGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGTGAA 314
|||||||.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 341 GGGTCCCAAGCGGTACATCGTCATAGCCGGAAACAGTCAGAGCCACCAGCCAATGATCTTTTCAATGCTGCGAA 414
Query 315 AGCCGCCAAAAGTGACATGCAGTCTTTGGTAGATGAGTGGCTGGATAGCTACAAGCAAGACCAGGATGCAGGAT 388
|||.|||||||||||||||
Sbjct 415 AGCTGCCAAAAGTGACATG------------------------------------------------------- 433
Query 389 TTCTGGAGCTTGTTAACTTTTTCATCCAATCTTGCGGATGTAAAGGCATTGTGACCCCTGAGATGTTCAAGAAG 462
Sbjct 434 -------------------------------------------------------------------------- 433
Query 463 ATGTCCAACTCAGAGATCATCCAGCACCTAACAGAGCAGTTTAATGAGGACTCGGGGGACTACCCTCTCATAGC 536
Sbjct 434 -------------------------------------------------------------------------- 433
Query 537 TCCAGGTCCATCCTGGAAGAAGTTCCAGGGCAGCTTCTGTGAATTTGTGAGGACATTGGTCTGTCAGTGCCAGT 610
Sbjct 434 -------------------------------------------------------------------------- 433
Query 611 ACAGCCTCCTCTATGATGGCTTCCCTATGGACGACCTCATCTCCCTGCTCACTGGCCTCTCAGACTCACAAGTC 684
Sbjct 434 -------------------------------------------------------------------------- 433
Query 685 CGCGCCTTCCGTCACACTAGCACCCTGGCTGCTATGAAACTGATGACCTCCCTGGTAAAAGTTGCCCTCCAACT 758
Sbjct 434 -------------------------------------------------------------------------- 433
Query 759 GAGTGTGCACCAAGATAACAATCAGCGTCAGTATGAGGCTGAAAGAAACAAGGGGCCAGGGCAGAGGGCACCTG 832
Sbjct 434 -------------------------------------------------------------------------- 433
Query 833 AGCGGCTGGAGAGCCTGTTGGAGAAACGCAAAGAGCTCCAAGAGCATCAAGAGGAGATTGAGGGGATGATGAAT 906
Sbjct 434 -------------------------------------------------------------------------- 433
Query 907 GCCCTCTTCAGGGGTGTCTTTGTTCATCGGTACAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGA 980
||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 --------------------------------CAGGGATGTCCTTCCTGAGATCCGTGCTATCTGCATTGAGGA 475
Query 981 AATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGACTC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AATTGGGTGTTGGATGCAAAGCTACAGCACGTCTTTCCTCACCGACAGCTATTTAAAATATATTGGTTGGACTC 549
Query 1055 TGCATGATAAGCACCGAGAAGTCCGCCTGAAGTGTGTGAAGGCCCTGAAAGGGCTGTACGGTAACCGGGACCTG 1128
||||||||||||||||||||||||||.|||||||.||||||||.||||||||||||||||||||||||||||||
Sbjct 550 TGCATGATAAGCACCGAGAAGTCCGCGTGAAGTGCGTGAAGGCTCTGAAAGGGCTGTACGGTAACCGGGACCTG 623
Query 1129 ACCACACGCCTGGAGCTCTTCACCAGCCGCTTCAAGGACCGGATGGTTTCCATGGTCATGGACAGAGAGTATGA 1202
|||.|||||||||||||||||||..||||||||||||||.||||||||||||||.||||||||||||||||...
Sbjct 624 ACCGCACGCCTGGAGCTCTTCACTGGCCGCTTCAAGGACTGGATGGTTTCCATGATCATGGACAGAGAGTACAG 697
Query 1203 TGTGGCAGTGGAGGCTGTCAGATTACTGATACTTATCCTTAAGAACATGGAAGGGGTGCTGACGGACGCGGATT 1276
|||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||.|
Sbjct 698 TGTGGCAGTGGAGGCCGTCAGATTACTGATACTTATCCTTAAGAACATGGAAGGGGTGCTGATGGACGTGGACT 771
Query 1277 GTGAGAGCGTCTACCCCGTTGTGTATGCCTCTCATCGAGGCCTGGCCTCTGCCGCAGGCGAATTTCTGTACTGG 1350
|||||||||||||||||.|||||||.||||||.||.||||||||||||||||.|..||.|||||||||||||||
Sbjct 772 GTGAGAGCGTCTACCCCATTGTGTAGGCCTCTAATTGAGGCCTGGCCTCTGCTGTGGGTGAATTTCTGTACTGG 845
Query 1351 AAACTCTTCTACCCTGAGTGCGAGATAAGAATGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGCGCCCAGAG 1424
|||||.|||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||.||||||||
Sbjct 846 AAACTTTTCTACCCTGAGTGCGAGATAAGAACGATGGGTGGAAGAGAGCAACGCCAGAGCCCAGGTGCCCAGAG 919
Query 1425 GACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCGA------GCTCCATGACCACGCTGCTTACTTAG 1492
||||||||||||||||||||||||||||||||||||||||.| |||||..|| ||| ||||
Sbjct 920 GACTTTCTTCCAGCTTCTGCTGTCCTTCTTTGTGGAGAGCAAGAATCGGCTCCCAGA-CAC-CTGC-------- 983
Query 1493 TAGACAGTCTGTGGGACTGTGCAGGGGCTCGGCTGAA-GGACTGGGAGGGTCTGACAAGC---------CTGCT 1556
|| |||| |||| |.| |||||.||.| |||..
Sbjct 984 ----CA---------------------CTCG--TGAATGCA---------TCTGATAAACTCACTCACACTGAG 1021
Query 1557 GC--TGGAGAAGGACCAGAACCTGGGTGATGTGCAGGAGAGCACACTGATAGAAATCCTTGTGTCCAGTGCCCG 1628
|| ||| |||| ||| |||.|| ||| || |.||..||| |||
Sbjct 1022 GCCTTGG----GGAC-----------TGA-------GAGTGC-----GAT-GA----CATGGATCC--TGC--- 1058
Query 1629 GCAAGCTTCAGAGGGGC-ACCCGCCTGTGGGCCGGGTCACTGGGAGGAAGGGCTTAACCTCTAAGGAGCGCAAG 1701
||.| |.||||| || |||||.| |||| |||
Sbjct 1059 -------------GGACAAACCGCC------CC---------------AGGGCGT-ACCT------AGC----- 1086
Query 1702 ACCCAAGCCGATGACAGGGTGAAGTTGACTGAGCACCTCATC-CCCCT-GCTGCCCCAGCTCCTGGCCAAGTTC 1773
|||.|||| || |||| | ||.|| |.| |.|||||||| |||
Sbjct 1087 ACCGAAGC--AT--CAGG-----------------------CGCCACTAGGT-CTCCAGCTCC--------TTC 1124
Query 1774 TCAGCTGATGCAGAGAAGGTCACTCCCCTGCTCCAGCTTCTCAGCTGCTTTGACCTCCACATCTACTGCACTGG 1847
||.|.|||.|.
Sbjct 1125 TCGGATGACGT--------------------------------------------------------------- 1135
Query 1848 GCGCTTGGAGAAGCACCTGGAGCTGTTCCTGCAGCAACTCCAGGAGGTGGTGGTGAAGCATGCAGAGCCAGCGG 1921
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 1922 TGCTTGAGGCTGGGGCGCATGCCCTCTACCTGCTCTGTAATCCCGAATTCACTTTCTTCAGCCGGGCGGACTTT 1995
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 1996 GCCCGCAGCCAGCTAGTAGATTTGCTGACTGACCGCTTCCAGCAGGAGCTTGAAGAGCTGTTACAGTCGTCCTT 2069
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2070 CCTAGATGAGGATGAGGTATATAATCTGGCAGCCACTCTGAAACGCCTCTCTGCCTTCTACAACACTCATGACC 2143
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2144 TGACTCGCTGGGAGCTCTATGAGCCATGTTGCCAACTCCTGCAGAAGGCTGTGGACACAGGAGAGGTTCCTCAC 2217
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2218 CAGGTTATCCTGCCAGCCTTGACTCTTGTCTATTTTTCCATTCTCTGGACACTAACCCACATTTCTAAATCAGA 2291
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2292 TGCTTCCCAGAAGCAGCTGTCGAGTTTGAGGGACAGAATGGTGGCCTTCTGTGAACTCTGCCAGAGTTGCCTCT 2365
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2366 CAGATGTGGATACTGAGATCCAGGAGCAGGCTTTTGTCTTATTAAGTGATCTACTTCTCATCTTTAGCCCTCAG 2439
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2440 ATGATTGTTGGGGGCCGTGATTTCCTTAGGCCACTTGTCTTTTTTCCTGAAGCTACTCTCCAGTCTGAGCTAGC 2513
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2514 CAGCTTCCTCATGGACCACGTCTTCATCCAGCCGGGAGACCTGGGCAGTGGTGATTCCCAGGAGGATCATTTAC 2587
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2588 AGATAGAGCGGCTACACCAGCGGCGCCGCCTCCTAGCCGGGTTCTGCAAGCTGTTGCTTTATGGGGTGCTGGAG 2661
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2662 ATGGATGCAGCCTCAGATGTTTTCAAACACTACAACAAGTTCTACAATGACTATGGTGACATTATCAAGGAAAC 2735
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2736 ATTAACTAGAGCAAGGCAGATTGACCGAAGTCATTGTTCCCGAATCCTGCTGCTGAGCCTCAAGCAGCTGTACA 2809
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2810 CAGAACTGCTGCAGGAGCATGGGCCCCAGGGCCTGAATGAGCTTCCTGCCTTCATCGAGATGAGGGACCTGGCC 2883
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2884 CGGAGGTTTGCCTTGAGTTTTGGACCCCAGCAGCTGCAGAACCGTGACCTCGTGGTCATGCTACACAAGGAAGG 2957
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 2958 CATCCAGTTCTCCTTGTCTGAGCTTCCTCCAGCTGGCTCCTCCAATCAGCCTCCAAATCTGGCATTCCTGGAGC 3031
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 3032 TCCTTTCAGAGTTTTCCCCCCGACTCTTCCATCAGGACAAGCAGCTTTTACTGTCCTATCTAGAAAAGTGCCTG 3105
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 3106 CAGCATGTCTCCCAGGCACCTGGCCATCCCTGGGGCCCAGTCACCACCTACTGCCACTCCCTCAGCCCTGTGGA 3179
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 3180 GAACACAGCAGAGACCAGCCCTCAGGTCCTCCCCAGCTCCAAGAGGAGGCGCGTTGAAGGGCCTGCCAAGCCTA 3253
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 3254 ACAGAGAGGACGTCTCCTCGTCCCAGGAAGAAAGTCTGCAGCTGAACAGCATCCCGCCCACGCCCACCCTCACC 3327
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 3328 TCCACAGCTGTGAAGAGCAGGCAGCCCCTGTGGGGGTTGAAAGAGATGGAGGAAGAAGATGGCTCAGAGTTGGA 3401
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 3402 TTTTGCCCAGGGTCAGCCCGTCGCAGGCACCGAGAGGTCAAGGTTCTTGGGTCCACAATATTTCCAGACTCCAC 3475
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 3476 ACAACCCTTCAGGTCCTGGCCTGGGCAACCAGCTGATGCGACTCAGCCTTATGGAAGAGGACGAGGAAGAAGAG 3549
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 3550 TTAGAAATCCAGGATGAGTCAAATGAAGAACGGCAGGATACAGACATGCAAGCAAGTAGCTACTCTTCCACCAG 3623
Sbjct 1136 -------------------------------------------------------------------------- 1135
Query 3624 TGAGCGCGGGCTGGACCTCTTAGATTCTACAGAGCTGGATATTGAGGATTTC 3675
Sbjct 1136 ---------------------------------------------------- 1135
