Nucleotide Global Alignment
Description
- Query:
- TRCN0000477262
- Subject:
- XR_002958239.1
- Aligned Length:
- 4454
- Identities:
- 2963
- Gaps:
- 1490
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTTTTCCCCCCAAACCACGTACCCGAGGGTCGCGCCAGCCCGACCCTGCGGCACCCCCACTCCCCACTCCGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGGACAGGCCTCGGCAGCCGCAGCGTCTCACCCGGTCTTCGCGGCCACGTGGGGAAAGGTGGGGCGCGCGGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTCACCCAGGGAGCCGCCTCTAGCCCCTTCCGGCCGCCGTACGCGCGCAGGCGCTGTGGCGCCCCTAGGCTTGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTCCCAGAGACTCGCGGACGCTCACGATAACCAAGGACGACCGCGAACCAAGGGCAAAATAACATGGCAGCCA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GACGAATTACACAGGAGACTTTTGATGCTGTATTACAAGAAAAAGCCAAACGATATCACATGGATGCCAGTGGT 370
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 371 GAGGCTGTAAGCGAAACTCTTCAGTTTAAAGCTCAAGATCTCTTAAGGGCAGTCCCAAGATCCAGAGCAGAGAT 444
Query 3 GTATGATGACGTCCACAGCGATGGCAGATACTCCCTCAGTGGATCTGTAGCTCACTCTAGAGATGCCGGAAGAG 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTATGATGACGTCCACAGCGATGGCAGATACTCCCTCAGTGGATCTGTAGCTCACTCTAGAGATGCCGGAAGAG 518
Query 77 AAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCCTTCAGATCAAGCAACCCTTCCATCAGTGATGACAGCTAC 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAGGCCTGAGAAGTGACGTATTTCCAGGGCCTTCCTTCAGATCAAGCAACCCTTCCATCAGTGATGACAGCTAC 592
Query 151 TTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTCTCACTCTGATTCTCGGGACCAGGTCATTGGCCACCGGAA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTTCGCAAAGAATGTGGCCGGGATCTGGAATTTTCTCACTCTGATTCTCGGGACCAGGTCATTGGCCACCGGAA 666
Query 225 ATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTGCGCTCCGTGGTTCTTGGGAACAAGACTTTGGCCATCCAG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATTGGGGCATTTCCGTTCTCAGGACTGGAAATTTGCGCTCCGTGGTTCTTGGGAACAAGACTTTGGCCATCCAG 740
Query 299 TTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGTTTTGGTCCCTCTGCAGTTTTGGGGGACTTTGGATCTTCC 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTTCTCAAGAGTCCTCTTGGTCACAGGAGTATAGTTTTGGTCCCTCTGCAGTTTTGGGGGACTTTGGATCTTCC 814
Query 373 AGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAGTCGGGATTATGACGTGGACCATCCTGGGGAGGCTGACTC 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGGCTGATTGAGAAAGAGTGTTTGGAGAAGGAGAGTCGGGATTATGACGTGGACCATCCTGGGGAGGCTGACTC 888
Query 447 TGTGCTTAGGGGCAGCAGTCAAGTCCAGGCCAGAGGTCGAGCTCTAAACATCGTTGACCAGGAAGGTTCCCTCC 520
|||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGTGCTTAGGGGCGGCAGTCAAGTCCAGGCCAGAGGTCGAGCTCTAAACATCGTTGACCAGGAAGGTTCCCTCC 962
Query 521 TAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCTAAGGGGGGTGTTGGGAAACTTGTCACATTGAGAAATGTG 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TAGGAAAGGGGGAGACTCAGGGCCTGCTCACAGCTAAGGGGGGTGTTGGGAAACTTGTCACATTGAGAAATGTG 1036
Query 595 AGCACAAAAAAAATACCCACCGTGAATCGTATTACTCCCAAAACTCAGGGCACTAACCAAATCCAGAAAAACAC 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AGCACAAAAAAAATACCCACCGTGAATCGTATTACTCCCAAAACTCAGGGCACTAACCAAATCCAGAAAAACAC 1110
Query 669 TCCAAGTCCTGATGTGACCCTGGGGACAAACCCAGGGACAGAAGATATCCAGTTCCCCATTCAGAAGATCCCTC 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCCAAGTCCTGATGTGACCCTGGGGACAAACCCAGGGACAGAAGATATCCAGTTCCCCATTCAGAAGATCCCTC 1184
Query 743 TGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGAAGAAAGATGAGCTTTGACATCATAGATAAGTCTGATGTT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGGGGCTGGATCTGAAGAATCTTCGGCTCCCCAGAAGAAAGATGAGCTTTGACATCATAGATAAGTCTGATGTT 1258
Query 817 TTTTCAAGATTTGGGATAGAAATAATCAAATGGGCAGGATTCCACACCATAAAAGATGATATTAAATTTTCCCA 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTTCAAGATTTGGGATAGAAATAATCAAATGGGCAGGATTCCACACCATAAAAGATGATATTAAATTTTCCCA 1332
Query 891 ACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAACCTGTGCTAAAATGCTTGCCTCATTCAAATGTTCCTTAA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ACTTTTCCAGACTCTCTTTGAACTTGAAACAGAAACCTGTGCTAAAATGCTTGCCTCATTCAAATGTTCCTTAA 1406
Query 965 AACCAGAGCACAGAGATTTTTGCTTTTTTACTATCAAATTTTTAAAGCACTCTGCTTTGAAAACACCCAGAGTT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AACCAGAGCACAGAGATTTTTGCTTTTTTACTATCAAATTTTTAAAGCACTCTGCTTTGAAAACACCCAGAGTT 1480
Query 1039 GATAATGAGTTTTTAAACATGCTTTTAGACAAAGGTGCTGTGAAGACCAAAAATTGCTTTTTTGAAATCATAAA 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GATAATGAGTTTTTAAACATGCTTTTAGACAAAGGTGCTGTGAAGACCAAAAATTGCTTTTTTGAAATCATAAA 1554
Query 1113 GCCTTTTGACAAGTACATAATGAGACTTCAAGACCGGCTTCTGAAGAGTGTCACACCTTTGCTTATGGCCTGCA 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GCCTTTTGACAAGTACATAATGAGACTTCAAGACCGGCTTCTGAAGAGTGTCACACCTTTGCTTATGGCCTGCA 1628
Query 1187 ATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTCAGTAACCCCCTGGACTTGGCTCTTGCCCTAGAAACCACC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 ATGCCTACGAGCTAAGTGTCAAGATGAAGACCCTCAGTAACCCCCTGGACTTGGCTCTTGCCCTAGAAACCACC 1702
Query 1261 AACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGGACAGACATTTTCCTTGGCCTCTTCTTTCCGGCAGGAGAA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AACTCTCTCTGCCGGAAGTCTTTGGCCCTTTTGGGACAGACATTTTCCTTGGCCTCTTCTTTCCGGCAGGAGAA 1776
Query 1335 AATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTCCCTCACCTGCTGCGTTTCCAAACTTCGAAGACTCCACTT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 AATCTTAGAAGCTGTCGGCCTGCAAGATATAGCTCCCTCACCTGCTGCGTTTCCAAACTTCGAAGACTCCACTT 1850
Query 1409 TGTTTGGGCGAGAGTACATAGACCACCTGAAGGCCTGGCTAGTCAGCAGCGGATGTCCCCTCCAGGTTAAGAAA 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGTTTGGGCGAGAGTACATAGACCACCTGAAGGCCTGGCTAGTCAGCAGCGGATGTCCCCTCCAGGTTAAGAAA 1924
Query 1483 GCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAATGATTCCTCCTACGAAACCTGAAATTCAGGCCAAGGCTCC 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 GCCGAACCAGAGCCGATGCGAGAGGAGGAGAAAATGATTCCTCCTACGAAACCTGAAATTCAGGCCAAGGCTCC 1998
Query 1557 AAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAGATCACAGGGTAGTGGGCACCATCGACCAGCTTGTGAAAC 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 AAGTAGTCTGAGTGATGCTGTCCCCCAGCGAGCAGATCACAGGGTAGTGGGCACCATCGACCAGCTTGTGAAAC 2072
Query 1631 GTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGAACTCTTCTCAAAGAGGACCCTGCTTACTGGTTTTTGTCT 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 GTGTCATCGAAGGCAGCCTGTCTCCCAAAGAGAGAACTCTTCTCAAAGAGGACCCTGCTTACTGGTTTTTGTCT 2146
Query 1705 GATGAAAATAGTCTGGAGTATAAATATTACAAGCTGAAGTTGGCAGAAATGCAGCGGATGAGCGAGAACTTGCG 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 GATGAAAATAGTCTGGAGTATAAATATTACAAGCTGAAGTTGGCAGAAATGCAGCGGATGAGCGAGAACTTGCG 2220
Query 1779 AGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTGCAGTGAGGGCCATGCTGTACTCCCGGGCTGTCCGCAACC 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 AGGAGCCGACCAGAAGCCGACCTCAGCAGACTGTGCAGTGAGGGCCATGCTGTACTCCCGGGCTGTCCGCAACC 2294
Query 1853 TCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGGCTCCTCCGTGCTCAAGGGCTCCGGGGCTGGAAGGCGAGG 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TCAAGAAGAAACTCCTTCCGTGGCAGCGGCGGGGGCTCCTCCGTGCTCAAGGGCTCCGGGGCTGGAAGGCGAGG 2368
Query 1927 AGAGCGACCACCGGGACCCAGACCCTCCTATCCTCAGGCACCAGGCTGAAACACCACGGCCGGCAGGCTCCAGG 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 AGAGCGACCACCGGGACCCAGACCCTCCTATCCTCAGGCACCAGGCTGAAACACCACGGCCGGCAGGCTCCAGG 2442
Query 2001 CCTCTCACAGGCAAAACCATCCCTGCCAGACAGAAATGATGCTGCCAAGGACTGCCCGCCAGACCCAGTTGGAC 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 CCTCTCACAGGCAAAACCATCCCTGCCAGACAGAAATGATGCTGCCAAGGACTGCCCGCCAGACCCAGTTGGAC 2516
Query 2075 CTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGCCCATCCCCCAAGCCAGCAGGAGTGGACATCTCTGAAGCA 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CTTCTCCTCAGGACCCCAGCTTAGAAGCCTCAGGCCCATCCCCCAAGCCAGCAGGAGTGGACATCTCTGAAGCA 2590
Query 2149 CCTCAGACCTCTTCTCCCTGCCCATCTGCTGACATTGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAG 2222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CCTCAGACCTCTTCTCCCTGCCCATCTGCTGACATTGACATGAAGACAATGGAGACTGCAGAGAAACTGGCTAG 2664
Query 2223 ATTTGTTGCTCAGGTGGGACCAGAGATCGAACAATTCAGCATAGAAAACAGCACCGATAACCCTGACCTGTGGT 2296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 ATTTGTTGCTCAGGTGGGACCAGAGATCGAACAATTCAGCATAGAAAACAGCACCGATAACCCTGACCTGTGGT 2738
Query 2297 TTCTACATGACCAAAATAGTTCTGCTTTCAAATTCTATCGAAAGAAAGTGTTTGAACTATGTCCATCAATTTGT 2370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 TTCTACATGACCAAAATAGTTCTGCTTTCAAATTCTATCGAAAGAAAGTGTTTGAACTATGTCCATCAATTTGT 2812
Query 2371 TTCACGTCATCTCCGCACAACCTTCACACTGGTGGTGGTGACACCACGGGTTCTCAGGAGAGCCCCGTGGACCT 2444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 TTCACGTCATCTCCGCACAACCTTCACACTGGTGGTGGTGACACCACGGGTTCTCAGGAGAGCCCCGTGGACCT 2886
Query 2445 CATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCCCTCCGCGGGAGGCTGAGCTGGAGAGCCCAG--------- 2509
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 CATGGAAGGGGAAGCAGAGTTTGAAGACGAGCCCCCTCCGCGGGAGGCTGAGCTGGAGAGCCCAGAGGTGATGC 2960
Query 2510 -------------------------------------------------------------------------- 2509
Sbjct 2961 CTGAGGAGGAGGACGAGGACGATGAGGATGGGGGAGAGGAGGCCCCCGCTCCTGGAGGGGCGGGCAAGTCTGAG 3034
Query 2510 -------------------------------------------------------------------------A 2510
|
Sbjct 3035 GGCAGCACCCCTGCCGACGGCCTTCCCGGCGAGGCTGCCGAGGACGACCTGGCTGGAGCACCTGCCTTGTCACA 3108
Query 2511 GGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGATCAGCAGCAAGTCATTGAAGGTTGGCATGATTCCAGCTC 2584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 GGCCTCCTCAGGTACCTGCTTCCCTCGGAAGAGGATCAGCAGCAAGTCATTGAAGGTTGGCATGATTCCAGCTC 3182
Query 2585 CCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGTCCATGAACCAGTTCGAATTGCCTATGACAGGCCTCGGGGT 2658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 CCAAGAGAGTGTGTCTCATCCAGGAGCCAAAAGTCCATGAACCAGTTCGAATTGCCTATGACAGGCCTCGGGGT 3256
Query 2659 CGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCCAGCAGAAGCTGACCGATAAGAACCTGGG 2732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 CGTCCCATGTCCAAAAAGAAGAAACCCAAGGACTTGGACTTCGCCCAGCAGAAGCTGACCGATAAGAACCTGGG 3330
Query 2733 CTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTGGGCTCCCTCGGAAAGGGCATCAGGGAGC 2806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 CTTCCAGATGCTGCAGAAGATGGGCTGGAAGGAGGGCCATGGCCTGGGCTCCCTCGGAAAGGGCATCAGGGAGC 3404
Query 2807 CGGTCAGCGTGTACGCAGCAGGCAGCCTGGGGTGGGAGTGGGTGGGGCCTCAGTCCTTCCACCTGCAGCCTGCC 2880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 CGGTCAGCGTGTACGCAGCAGGCAGCCTGGGGTGGGAGTGGGTGGGGCCTCAGTCCTTCCACCTGCAGCCTGCC 3478
Query 2881 GCTTGGCTCCTTCACAGCCAAGATGGCTTACAGCTGGCAGTTGATTTTTGTTTTTTAAACAGAAGGCATCTTCA 2954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 GCTTGGCTCCTTCACAGCCAAGATGGCTTACAGCTGGCAGTTGATTTTTGTTTTTTAAACAGAAGGCATCTTCA 3552
Query 2955 GATGAGAAGC---------------------------------------------------------------- 2964
||||||||||
Sbjct 3553 GATGAGAAGCTGATCATTTACATGTGCAGGTGTTTACAGGGCTCCTTTCTGTCCTGGTGTAGATTTTTTAACCA 3626
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3627 GCTTGTTGGCCCTGGTCATTTTGGCCACATTTGTGACCATCATAAAAGCTAAGTGGTATTTCTGTGTAGTTTCC 3700
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3701 GTCTGGAACTGCTTTCCCATTCCCGGGAACCCATAGCCGGGCCAGCCAGGGTCCCGAACACAGGCCCAAAGTTT 3774
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3775 ATTAAACCCCGATCATAACCTCCAGCAGGCATTTCATTTAATACTGAGCTTAGTTCCTGCTGGGTAAGGCATTC 3848
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3849 CGAGGTAACCAGGGCCCTCTGGGCACCCCCTCAAAAGCCAGCTCTTCGAGGGTGAGTACTCCTTGTTTCTACTG 3922
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3923 TGAGTCGCGTCTTGATTTTCCCTTTCTTTGATGTCTCAGTGTGTGTCCCAAACACCTGCATCTCATGGACTGTT 3996
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 3997 TGTGCCCATGCCCAGTTCCTGGCATGCCAGGCCCTGGGCTCAGGTGCACAACTGACTCTCTTTTTCACTCCCTA 4070
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 4071 GGGGAACCCCCTCGGAAGGGGAAGGGTTGGGTGCTGACGGGCAGGAGCACAAAGAAGACACATTCGATGTGTTC 4144
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 4145 CGACAGAGGATGATGCAGATGTACAGACACAAGCGGGCCAACAAATAGTTCCAGGGTCACCCCCGAGAGGACAA 4218
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 4219 CAGGCATCTGGAAGTGCTCTCTCGCCACTCTGGGTGCTTTACTGTCTCTGGCTTGTTTCCATCACTGGAAATCA 4292
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 4293 CTTAGAGAATTGTAGTGTTTTTGGTCCTTGATAAAGCCTAGAAGACATTTGTGATGTTACAAAATGGAAGTTTT 4366
Query 2965 -------------------------------------------------------------------------- 2964
Sbjct 4367 CTTTTGTTTCTGTTTTTTAAGATCTAAGAAGTTGTGAATGTTGTTAATCATTTAGCCGTTGCAATAAATGTAGA 4440
Query 2965 -------------- 2964
Sbjct 4441 GGAAATGCAGTGTG 4454
