Nucleotide Global Alignment

Description

Query:
TRCN0000478216
Subject:
XM_006496876.1
Aligned Length:
3096
Identities:
1574
Gaps:
1308

Alignment

Query    1  ATGGAGGTCAGAG------CTTCATTA---------------------CAGAAGATAGTTTCTAATGGTGATGA  47
            ||||||..||.||      ||||..||                     |.||||||||.|||.|||||||||||
Sbjct    1  ATGGAGCACACAGATGCCACTTCTATAAAGGATGATGGGAAGCCACAGCTGAAGATAGCTTCCAATGGTGATGA  74

Query   48  ACAATTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAAGGCCAAGCAGTCTTCTTGTTGATTGTC  121
            .||.||||||||||||||||||||||||||||||||||||||||||.|.|.||||.||||.|.|||||||||.|
Sbjct   75  GCAGTTGGAAAAAGCCATGGAAGAGATTTTGAGAGATTCCGAGAAAGGACAAAGCGGTCTACCTGTTGATTGCC  148

Query  122  AGAGTTCCAGTGAGATTTCAGACCATTCGTTTGGAGATATTCCAGCCAGCCAAACAAATAAGCCATCTCTTCAG  195
            |..|.||||||||||||||||||..|.|.|||||||||.|.||.|||||||||||||.||||||..||||.|||
Sbjct  149  AAGGATCCAGTGAGATTTCAGACTGTCCCTTTGGAGATGTGCCGGCCAGCCAAACAACTAAGCCGCCTCTCCAG  222

Query  196  TTAATTTTGGATCCGTCTAACACAGAAATTTCTACACCCAGACCATCTTCTCCAGGTGGACTACCTGAAGAAGA  269
            ||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||.|..||.|.|||||||||||
Sbjct  223  TTAATTTTGGATCCATCTAATACAGAAATTTCCACACCCAGACCATCTTCTCCAAGCAGATTTCCTGAAGAAGA  296

Query  270  TAGTGTTTTATTTAATAAACTGACCTACTTAGGATGTATGAAGGTTTCTTCCCCACGTAATGAAGTAGAGGCTT  343
            .||||||.|.|||||.||.|||||.||||||||||||||||||||||||||||||||.|.||||||.|||||||
Sbjct  297  CAGTGTTCTCTTTAACAAGCTGACATACTTAGGATGTATGAAGGTTTCTTCCCCACGCAGTGAAGTGGAGGCTT  370

Query  344  TACGGGCAATGGCAACCATGAAATCTTCCAGTCAATACCCCTTTCCTGTTACCCTGTATGTACCAAATGTTCCA  417
            |||||||.|||||.|||||||.|.||||||||||.|||||||||.|||||||.||||||||.||.|||||||||
Sbjct  371  TACGGGCCATGGCCACCATGAGAGCTTCCAGTCAGTACCCCTTTGCTGTTACTCTGTATGTGCCCAATGTTCCA  444

Query  418  GAAGGTTCTGTGAGAATTATAGACCAATCCAGCAATGTGGAGATAGCATCTTTTCCAATCTATAAGGTGTTATT  491
            |||||.|||||||||||.||||||||.||.|||||||||||||||||||||||||||||.|||||.|||.|.||
Sbjct  445  GAAGGATCTGTGAGAATCATAGACCAGTCAAGCAATGTGGAGATAGCATCTTTTCCAATTTATAAAGTGCTTTT  518

Query  492  CTGTGCACGTGGACATGACGGAACAACAGAGAGCAATTGCTTTGCATTTACAGAGAGTTCCCATGGTTCGGAAG  565
            ||||||||||||.|||||.||.|||.|.||||||||||||||||||||||||||||||||.|||||.||.||||
Sbjct  519  CTGTGCACGTGGGCATGATGGGACAGCCGAGAGCAATTGCTTTGCATTTACAGAGAGTTCTCATGGCTCAGAAG  592

Query  566  AATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTGTACAGTTTCTGTACAGCA  639
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.||||||||.||.|||
Sbjct  593  AATTTCAGATACATGTTTTCTCCTGTGAAATTAAAGAGGCAGTAAGCAGAATTTTATATAGTTTCTGCACTGCA  666

Query  640  TTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTTATTCCTACCCCCGACAGTGATGTGTTTAC  713
            ||||||||||||||||||||||||||||||||||||||||||||.||.||.||.||||||||||||||||||||
Sbjct  667  TTCAAACGTTCTTCCAGACAAGTGTCTGATGTTAAAGACTCAGTCATCCCGACTCCCGACAGTGATGTGTTTAC  740

Query  714  CTTCAGTGTCTCCTTGGAGGTAAAAGAAGACGATGGAAAAGGAAACTTTAGCCCTGTGCCTAAGGATAGAGATA  787
            |||||||||.|||||||||||.||||||||.||||||||||||||||||||.||.|||||||||||||||||||
Sbjct  741  CTTCAGTGTTTCCTTGGAGGTCAAAGAAGATGATGGAAAAGGAAACTTTAGTCCCGTGCCTAAGGATAGAGATA  814

Query  788  AATTTTATTTCAAATTAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTGCAGCAACTTTCTAACAAAGAA  861
            ||||||||||||||.|||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||
Sbjct  815  AATTTTATTTCAAAATAAAGCAAGGAATAGAGAAGAAGGTTGTGATTACAGTTCAGCAACTGTCTAACAAAGAA  888

Query  862  TTAGCTATTGAAAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACT  935
            |||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTAGCTATTGAGAGATGTTTTGGAATGTTATTAAGCCCAGGTCGAAACGTGAAGAACAGTGACATGCATTTACT  962

Query  936  GGATATGGAATCCATGGGAAAGAGCTATGATGGGAGAGCTTATGTCATCACTGGCATGTGGAACCCCAATGCAC  1009
            |||||||||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||.||||
Sbjct  963  GGATATGGAGTCCATGGGAAAGAGCTATGATGGGAGAGCTTACGTCATCACGGGCATGTGGAACCCCAACGCAC  1036

Query 1010  CAGTATTTCTGGCACTTAACGAGGAAACCCCAAAAGATAAGCAAGTATACATGACTGTGGCAGTGGATATGGTA  1083
            ||.||||||||||.|||||.||.|||||.||.||||||||.|..||.||||||||.||.||||||||.|||||.
Sbjct 1037  CAATATTTCTGGCTCTTAATGAAGAAACGCCCAAAGATAAACGGGTGTACATGACCGTTGCAGTGGACATGGTG  1110

Query 1084  GTCACAGAGGTGGTGGAGCCTGTTCGCTTTCTCCTGGAGACAGTAGTCCGTGTGTACCCTGCAAATGAGCGATT  1157
            ||||||||||||||||||||.||.||.||||||||||||||||||||.|||||.|||||||||||||||.||||
Sbjct 1111  GTCACAGAGGTGGTGGAGCCAGTCCGTTTTCTCCTGGAGACAGTAGTTCGTGTATACCCTGCAAATGAGAGATT  1184

Query 1158  TTGGTATTTCAGCAGAAAGACTTTCACAGAGACCTTCTTCATGAGATTGAAACAGTCTGAGGGAAAAGGCCATA  1231
            |||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||||||||.|
Sbjct 1185  TTGGTATTTCAGCAGAAAGACTTTCACAGAGACTTTCTTCATGAGGTTGAAACAGTCTGAGGGAAAAGGCCACA  1258

Query 1232  CCAATGCTGGAGATGCAATATATGAGGTGGTGAGTCTACAGCGAGAGTCTGACAAGGAGGAACCAGTCACTCCT  1305
            .||.|||||||||||||||||||||.|||||||||||.|||.||||.||||||||||||||.||..||||.|||
Sbjct 1259  GCAGTGCTGGAGATGCAATATATGAAGTGGTGAGTCTGCAGAGAGAATCTGACAAGGAGGAGCCCATCACCCCT  1332

Query 1306  ACTAGTGGAGGGGGTCCAATGTCACCCCAGGATGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCAAGTGG  1379
            |||||||..|||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||||.|||||
Sbjct 1333  ACTAGTGCTGGGGGCCCAATGTCACCACAGGAGGATGAAGCAGAAGAGGAGAGTGATAATGAACTCTCGAGTGG  1406

Query 1380  AACAGGTGATGTGTCTAAGGATTGTCCTGAGAAGATCCTGTATTCTTGGGGAGAGTTGCTAGGAAAATGGCACA  1453
            |||||||||||||||.||.||.||||||||||||||.||.||||||||||||||.|||.||||||.||||||||
Sbjct 1407  AACAGGTGATGTGTCAAAAGACTGTCCTGAGAAGATTCTCTATTCTTGGGGAGAATTGTTAGGAAGATGGCACA  1480

Query 1454  GTAACCTTGGTGCACGACCGAAAGGGCTGTCTACTCTGGTGAAGAGTGGTGTCCCTGAAGCATTGAGGGCAGAG  1527
            .|||||||||||..|||||.|||||.||.|..||..||||.|||||||||||.|||||.|||.|.||||||||.
Sbjct 1481  ATAACCTTGGTGGCCGACCAAAAGGACTATTCACCTTGGTAAAGAGTGGTGTTCCTGAGGCACTAAGGGCAGAA  1554

Query 1528  GTATGGCAGTTATTGGCAGGCTGCCATGACAACCAGGCAATGCTGGATAGATACCGAATTCTTATCACAAAGCA  1601
            ||||||||..||||.|||||.|||||||||||.||||.|||||||||||.|||||||||.||||||||||||.|
Sbjct 1555  GTATGGCAACTATTAGCAGGATGCCATGACAATCAGGAAATGCTGGATAAATACCGAATCCTTATCACAAAGGA  1628

Query 1602  ------ACAGATGAAATTTAGTCTTACACCGAGACAGACTATTCACC--------------------TAGTT-A  1648
                  ||||..||...|||   |||| .|||||     ||||||.|                    ||.|| |
Sbjct 1629  CTCTGCACAGGAGAGTGTTA---TTAC-TCGAGA-----TATTCATCGTACATTTCCTGCACACGATTACTTCA  1693

Query 1649  AATA---TGAAGGGTCTATGAAGGTCTCCATGACACCCTGTA-ACCAGCTGCAATTTGACATTAGACTTGATGT  1718
            ||.|   ||.|||     .||.|||   ||.||..||||.|| |..|.||||||   |.|.|   |||.|.|||
Sbjct 1694  AAGACACTGGAGG-----CGATGGT---CAAGAATCCCTTTACAAAATCTGCAA---GGCCT---ACTCGGTGT  1753

Query 1719  TC--TGATTACTT---ATACT-------------TTTTGTTTTAGTTCCTTTCCT-------------------  1755
            ||  |||..||.|   .||||             ||||.||   |.|.||.|.||                   
Sbjct 1754  TCGATGAAGACATTGGGTACTGTCAAGGACAGTCTTTTCTT---GCTGCTGTACTACTGTTGCATATGCCAGAG  1824

Query 1756  GAGCCTGAATTGT-----------ACAAATATGT------------------CCTAAAACACCAAC--TTATTA  1798
            ||||..|.|||.|           ||.|.|||||                  .||.|.|||..|||  ||.|.|
Sbjct 1825  GAGCAAGCATTCTGTGTTTTGGTGACTATTATGTATGGTTATAAATTGAGAGACTTATACAGAAACAATTTTGA  1898

Query 1799  AGAGGCTT-AATGC-----CTGT---------------------------------------------------  1815
            ||| .||| |.|||     ||.|                                                   
Sbjct 1899  AGA-TCTTCATTGCAAATTCTATCAACTTGAGAAACTAATGCAGGAACAGCTGCCAGACCTGTACAGCCACTTC  1971

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 1972  TGTGATCTGAACCTGGAAGCTCATATGTATGCATCCCAGTGGTTCCTCACTCTCTTTACTGCCAAGTTTCCACT  2045

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2046  CTGCATGGTGTTCCACATCATTGACCTTCTGCTGTGTGAGGGTTTGAATATAATCTTTCATGTAGCTTTGGCTC  2119

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2120  TTCTAAAGACCTCAAAGGAAGACCTCCTTCAGGCTGATTTTGAAGGTGCTTTGAAGTTTTTCAGAGTTCAGCTT  2193

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2194  CCAAAGAGATACCGGGCAGAGGAGAATGCAAGAAGATTGATGGAACAGGCTTGCAATATTAAAGTACCAACCAA  2267

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2268  AAAGCTGAAGAAATATGAAAAAGAATATCAGGCGATGCGGGAGAATCAGCTGCAGCAGGAGGACCCAATGGATA  2341

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2342  GATACAAGAGGGAGAACCGAAGATTACAGGAGGCCAGCATGAGGTTGGAACAAGAAAATGATGACCTTGCCCAT  2415

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2416  GAACTAGTGACAAGCAAAATTGCTCTGCGGAATGACTTGGATCAGGCAGAAGACAAGGCTGATGTGCTGAATAA  2489

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2490  GGAGCTCCTCTTTACCAAGCAGAGGTTGGTGGAGACTGAGGAAGAGAAGAGGAAGCAAGAGGAGGAGACCGCCC  2563

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2564  AGCTAAAAGAAGTCTTCAGGAAACAGTTAGAAAAGGCAGAATATGAGATAAAGAAGACAACAGCTATCATTGCT  2637

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2638  GAGTATAAACAGATATGTTCTCAATTAAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTAGA  2711

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2712  AGCAGTAAAGGGTAAGATGATGGCATGCAAACACTGCAGTGATATCTTCAGCAAGGAAGGAGCTTTAAAGCCAG  2785

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2786  TGGCCGTAAATAGAGAGGACCAGGGACTTGAAGCAGATGATGAAAAGGACTCACTTAAGAAGCAGCTGAGGGAG  2859

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2860  ATGGAACTGGAACTGGCACAGACCAAACTGCAGCTGGTGGAAGCCAAGTGCAAAATCCAGGAACTTGAGCATCA  2933

Query 1816  --------------------------------------------------------------------------  1815
                                                                                      
Sbjct 2934  GAGAGGAGCGCTTATGAATGAAATACAAGCTGCAAAAAACTCTTGGTTTAGTAAAACCCTGAACTCTATCAAAA  3007

Query 1816  --------------------------------------------------------------  1815
                                                                          
Sbjct 3008  CAGCCACAGGCACTCAGCCACTACAGCCGCCACAGGCTCCCCAGCCACCCAAGGAGAGCACA  3069

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