Nucleotide Global Alignment

Description

Query:
TRCN0000478282
Subject:
XR_001755385.1
Aligned Length:
2961
Identities:
188
Gaps:
2747

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCTCCAGGGTGTCCAGGAGTCTCTCTGCTGCCAGCCCCGCCCAGACTCCAGGCAGGTTCTCGTTGCTATGGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATCGCCGGTGCAAGCTGGATGCTTGGACGCGCCGCTGCCAGTCCAACGCAGACCCCGCCCACGACGTCGACGAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCGTGTAGCCCGCAGGTCCCGCGTGGCTCTCGTTGCCATGGTGATCGCCGCCGCTGGCTCAGGCGGACCAGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCGCGGAGCCCCAGCTTTCACAGCCATCGCTGACTGGGAGCAGGAGACCCCTCCCCACTCTACTTCCACTGCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGCTGTGCCATGCCTCACAGCCCAGTAAGGACTGTGGAAGAATGAGGTCCTCCCTGACACCTTTGGGGCCCCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGTGAGCCGCGACCGTGTCATCGCCAGCTTCCCTAAGTGGTACACGCCGGAAGCCTGTTTGCAGCTCAGGGAGC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACTTCCACGGGCAGGTCAGCGCTGCCTGCCAACGCAGGAACACGGGGACTGTCGGGCTCAAACTCTCCAAGGTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTGGTGGTTGGCGATCTCTACGTGGGGAAGACCAGCCTCATCCACAGGTTTTGCAAGAATGTTTTTGATCGAGA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CTACAAGGCCACCATTGGGGTGGACTTTGAAATTGAGCGCTTTGAGATTGCTGGGATTCCCTATAGCCTCCAGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TTGATCATCACGGCCTTTGACCTCACTGACGTGCAGACCCTGGAGCATACCAGGCAGTGGTTGGAGGATGCTCT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GAGGGAGAACGAGGCAGGCTCCTGCTTCATCTTCCTCGTGGGAACCAAGAAGGACCTTCTGTCAGGGGCCGCAT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  GTGAGCAGGCCGAAGCAGACGCTGTGCACCTGGCCAGGGAGATGCAGGCCGAGTACTGGTCAGTGTCGGCCAAG  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  ACTGGCGAGAACGTGAAGGCATTCTTCAGCCGCGTAGCCGCCCTGGCATTCGAGCAGTCGGTGCTGCAGGACCT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GGAGAGGCAGAGCAGTGCCCGGCTCCAGGTCGGCAATGGAGACCTAATCCAAATGGAAGGGAGTCCGCCCGAGA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  CCCAGGAGAGCAAGAGGCCCTCCAGCCTGGGCTGCTGCTAACTGGGGCCTGCGTGGAAGGCCTCCGCTCCCTGC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ACACACACGGACAGGAATTTCCGTGACTGTGGTGTGGAGACTGGAGCCCAAGCTCTGCAGCGTGTCGCCCTCAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCTGTAGGCCCATGTTCCAGTCCCTCCACCCACCCACCGGGCTCAGCTCCAGGGCACAGTCACTTGTCCGTTGC  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AGGTTGGGCACTAGAAAAGGCCCCCACTGGCTGCCTGGGAGCCCCACACCACCGGGCCAGTGCAGGCACTGTGG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  TGATCCCATAAAAGGCCAGTCCATTTGCAGGGTCATCAGACAGTCACCTTTGGCCTCAAGAGGCCTCAGAACTG  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CAAACTCCTGCGTCGGTCTATACTACTCGGCCATGGCCCACATCAGCAGTCAACCCTGCACTCTTTCCCAGCGA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TCTTGGATGTGTCCCCAGGATCCGTCACAGTGTTCCAGGCAACCTGGACTTGTCAAAGTCAGCACCTGAAGGAG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGGCCACCTGCCATTCCCCCTGGGAGTTTTCTGTTGTCAGCAGGACTTATGGTTCTGGGTCTCAGAGCTTCAGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  CCTCACTGTCCTTCTGCCACGGATGCTCAAGGTTCCTGGGCAGACCAGCACCTCTGGAGGACAATGGACAAAAT  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  GTCTCTTAGACCTGTTCTGGCTGAAGGGCTATCTCTGGCACCTCTGAGATCCCTAGGTCCTGCCCTCCTGGTCC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  GTGGGCCAGGATGTGCAGAACAACCACTCAGGCCTTTCTGGCCCACCTGGACAGTGCATTTACCTGTGTGCTGC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  GGGAGGCAGACTGCACAGCTGTCCTAGGGTAACTCACTCTGCAGCCCTTGAACATGGCACTGCCCTCCTCTGGC  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  ACTCATGCTGGGCCTGTGCCCACTGCTGCCTCTCCATCCCTCTCTCATTGGCCTATACATCTCTTAGGACCTTT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GTAATGGTGTCCATGCACCTTTAGAGGACTTCAGAGGCCCTGCCAAGTCTAGCATGTTCCTGTCTCCAACACCG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  CCTCCTGCACATGCAGAGCAGACAGAAATACCCCACACATTCCCCAGCCTCTCTGCCCAGTATGCTCATCCACA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  GGGTTTTCTCACTGCTATGAACCAGCCCCACAGCCCCAGGCCCCTGTCACCTGGCTATGCCCACTCATCCCACC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CGTCTCGTGCTGTTGCTTCCCGTAGATGGCGAGCACCTTGCAGGCAGCCTTCTGATCAGTACTGCTCTCCTAGG  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GCCTGGCACACTGCAGCTGCCCTGTAAATGTTCAGCTCAGCGATTGCCAAATACCAGTTAGGGAAGAACACTGG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  CATCTTTTTCTATTCATTCCCCCTTCAACATATTTTTTGTAGTTTTTTATATAAATGACTTTTTTTTTTTTTTG  2442

Query    1  --ATGGAGTCTCATTC-TGTCGCCCAGACTGGAGTGAAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCT  71
              |||||||.|||..| |||.||||||.||||||||.|.||||.|.|||||||||||.||||||||||||||| 
Sbjct 2443  AGATGGAGTTTCACCCTTGTTGCCCAGGCTGGAGTGCAATGGCGTAATCTCGGCTCAGTGCAACCTCTGCCTC-  2515

Query   72  CGAGG-TCAAGCGATTCTCCTGCCTCGGCCTCCGGAGTAGCTGGGATTACAGGCACACGCAACCATGCCCGGCT  144
            |.||| |.||||||||||||||||||.||||||..||||||||||||||||||||..|.|.||||||||.||||
Sbjct 2516  CCAGGTTGAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCATGCCTGGCT  2589

Query  145  AATTTTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAA  218
            ||    |||||||||||||||||||||||||||||.|||||||||.|||||||.|||||.||||||||.||||.
Sbjct 2590  AA----TTTTGTATTTTTAGTAGAGATGGGGTTTCTCCATGTTGGTCAGGCTGCTCTCGGACTCCTGATCTCAG  2659

Query  219  G-------------------------------------------------------------------------  219
            |                                                                         
Sbjct 2660  GTGACCTGCCCACCTCGGCCTCCCGAAGTGCTGGGATTACAAGGGTGAGCCACCATGCCCGGCCATAAATGATT  2733

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2734  TTATTCATTTTTATGTTTTCTTTTGGGCGGCGGGATGGAGTCTCTGTCACCCAGGCTGGCGTGCAATGGCACGA  2807

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2808  TCTTGGCTCACTGCAAGCTTCCCCTTCCGGGTTCATGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACT  2881

Query  220  --------------------------------------------------------------------------  219
                                                                                      
Sbjct 2882  ACAGGCACGTGTGACCATGCCGGGCTAATTTTTTATATTTTTAGTAGAGAGAGGTTTCACCGTGTTAGCCAGGA  2955

Query  220  -  219
             
Sbjct 2956  T  2956

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.