Nucleotide Global Alignment

Description

Query:
TRCN0000478353
Subject:
XM_006526804.3
Aligned Length:
4275
Identities:
1294
Gaps:
2796

Alignment

Query    1  ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA  71
            |||||||||||||||||||.||   |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct    1  ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA  74

Query   72  CAAAGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCCTCGTCTTCCTACAGGG  145
            ||||||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||||||||||||||||||
Sbjct   75  CAAAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCCTCGTCTTCCTACAGGG  148

Query  146  AAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA-------------------  200
            .||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||                   
Sbjct  149  GAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTCAGGCCTGGAGCCAGAG  222

Query  201  --------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGC  266
                    |.|||||||.||||..||||||||||||||.|||.|||||||.||.|||||||||||..||||.||
Sbjct  223  GACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGC  296

Query  267  TGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCCAGGATGCCACTTCCTCCAGTGCAG  340
            ||||||||||||.||||||||||||||||.||||.||.||||||||.||||||                     
Sbjct  297  TGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGG---------------------  349

Query  341  CCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGAAGGCACTGCCAGACCT  414
                                                                                      
Sbjct  350  --------------------------------------------------------------------------  349

Query  415  CCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCTGACCTT  488
                                                                                      
Sbjct  350  --------------------------------------------------------------------------  349

Query  489  CCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCGCCTCTG  562
                                                                                      
Sbjct  350  --------------------------------------------------------------------------  349

Query  563  GCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCCCCGGAG  636
                                                                                      
Sbjct  350  --------------------------------------------------------------------------  349

Query  637  GACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACTAAATGA  710
                                                                   .|||||||.|||||||.||
Sbjct  350  -------------------------------------------------------GCAGTCCTTTACTAAACGA  368

Query  711  AGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCGCCTATC  781
            ||||||||||||||..||||.|||.||||||||||.|||   ||||.||   ||||..|||||.||.|||||.|
Sbjct  369  AGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTGCCTACC  439

Query  782  CCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTCAGTAGC  855
            |||||||.||.||.|||||.|||||.|||||||||.||||.||||||||                         
Sbjct  440  CCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCG-------------------------  488

Query  856  CTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCACCTCACC  929
                 ||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|||.||.||
Sbjct  489  -----AGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCC  557

Query  930  TGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAAGCGATG  1003
            .||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|.|||||||
Sbjct  558  CGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATG  631

Query 1004  TTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATGTTTAAA  1077
            |.||.|..||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.||||||||||||
Sbjct  632  TGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAA  705

Query 1078  CAGATCCACAAACTGAACAGAGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAA  1151
            ||||||||||||||||||||||||||||||||.|||.|..|.||.||..||||.||.||.|||||.||||||||
Sbjct  706  CAGATCCACAAACTGAACAGAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAA  779

Query 1152  ATCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGG  1225
            .|||||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||||||||.|
Sbjct  780  GTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCG  853

Query 1226  CCACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGAT  1299
            |||||||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|||||||||
Sbjct  854  CCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGAT  927

Query 1300  AAGAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGT  1373
            ||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.|||||||||||.||
Sbjct  928  AAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGT  1001

Query 1374  TCTGACCAACGAAAAGAT--------------------------------------------------------  1391
            .||||||||.||.|||||                                                        
Sbjct 1002  CCTGACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAAT  1075

Query 1392  --------------------------------------------------------------------------  1391
                                                                                      
Sbjct 1076  TCTTTTCGGAATTGGAGTTTGGGAGACCGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAG  1149

Query 1392  --------------------------------------------------------GAGCTCAGCCATCAGCCC  1409
                                                                    |||||||||..|||||||
Sbjct 1150  GCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCAGTCAGCCC  1223

Query 1410  TACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAGGGAATCAG  1483
            .|||||.||.|||.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||.|||||.|
Sbjct 1224  GACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGG  1297

Query 1484  ACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAGGTGGTGAC  1557
            |||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||||||.|||
Sbjct 1298  ACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGAC  1371

Query 1558  ATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAA------------------  1613
            |||||||||||||||||.|||||||||||||||||.||||||||.|||||||||||                  
Sbjct 1372  ATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGTGGATCGTAAAGGCGG  1445

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 1446  GAATGCTCACATGATTTCTTCATCATCAGTTCATAGCCGAACGTTTCACACTAGCAATGCTTTAGGCCCTGGGT  1519

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 1520  GTAAGCACAAGAAACCCCTGTCGGCTGCGAAAGCCTGCATTTCGGAGATCCTTCCTTCTAAATTCAAACCCAGG  1593

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 1594  CTCTCTGCTCCCAGCGCTCTTTTGCAGGAACAGAAGAGTGTCCTGTTACCCTCAGAGAAGGCTCAGAGCTGTGA  1667

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 1668  GAACCTCTGTGTGTCTTTGAATGATTCCAAAAGAGGCCTCCCACTCCGGGTTGGGGGGAGCATCGAGAACCTGC  1741

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 1742  TCATGCGCTCCCGGCGGGATTACGATAGCAAGTCCAGTAGTACCATGAGCCTGCAGGAGTACGGCACCAGCTCC  1815

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 1816  AGGAGGCCCTGCCCTCTCTCCAGAAAGGCTGGACTGCACTTCTCCATGTTCTACCGGGACATGCACCAGATCAA  1889

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 1890  CCGAGCTGGCCTCTCCCTGGGCTCCATCTCCTCCTCAAGTGTGCGAGATCTTGCCTCCCACTTTGAAAGGAGCA  1963

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 1964  GACTGACGTTAGCCAGGGGTGAGCTGGGCGCTAGCCAAGAGGGCTCAGAGCATATCCCCAAGCACACCGTGTCC  2037

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2038  TCCCGCATCACGGCCTTTGAGCAGCTCATTCAGCGGTCCCGGTCCATGCCGTCCCTGGACTTCTCTGGCCGGCT  2111

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2112  GAGCAAGTCCCCGACCCCTGTGCTCTCTAGAAGCGGCCTGACCTCAGCTCGTTCAGCGGAATCCCTCCTCGAGT  2185

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2186  CTACCAAGCTCCGTCCCAGAGAGATGGACGGGATGGACTCCGGAGGGGTCTATGCGTCGCCCACGTGTAGCAAT  2259

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2260  ATGGCGGACCACGCCTTGAGCTTCCGGAGCCTTGTGCCCTCTGAGCCTCTTTCCATCTGCTCAGATGAGCTAGA  2333

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2334  CCACTGCTCAAATGTTTCTAACGACAGCAGGGAGGGCAGCGGGGGCAGTGTTCATGGAGACTTCCCCAAACATC  2407

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2408  GCCTCAACAAGTGCAAGGGCACCTGCCCGGCTTCATACACCCGGTTCACCACTATCCGCAAGCATGAGCAGCAG  2481

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2482  TCGTCCAGGCAGTCAGACTGGCGCTCGGATTCCAGGGGGGACAAGAACAGTCTCCTCAGAAACATCCACCTGAT  2555

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2556  GAGTCCCCTCCCTTTTCGATTGAAAAAGCCCCTCCAACAGCACCCCAGACAGCCTCCCCCCAGTGACTCCTCAG  2629

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2630  AGTCCCCTGCTGGCCAGAAAGCAGACCTTCCCTGCCACGACCCTCAGGACCAGCCCCACTCTGCGGGGAAACCC  2703

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2704  CTGGTCCCTGCTCGCCTGTCTTCCCGACATACCATGGCAAGGCTTAGCCACAACCTAGAACCCCCTCTGGACAG  2777

Query 1614  --------------------------------------------------------------------------  1613
                                                                                      
Sbjct 2778  ACCCGCAGGCCTGGAGGACTGCACAAGGGCCATTAATAACGGGAACCCTGTGCCCTACTCAGACCATGGCTTGG  2851

Query 1614  -------------------------------------------AGATTCAGAATCGCCAAGACATTTTATACCA  1644
                                                       |||||||||.||.||||||||||||||||||
Sbjct 2852  ACAGGAACAACAACCCACAAAGTGAACTGGCAGCGGCCCATGGAGATTCAGAGTCACCAAGACATTTTATACCA  2925

Query 1645  GCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACCA  1718
            ||||||||||||||.|||||.||||||||||||||.|||||.||.|||||||||||||||||||||||||||||
Sbjct 2926  GCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGAAACTTTTAGCGGACCA  2999

Query 1719  GAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGGCGTCATTCCGACGCACC  1792
            ||||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.|||||.|||||.||.|
Sbjct 3000  GAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCATC  3073

Query 1793  ATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAAAAAGGAAATCTGGGTCA  1866
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||||.|
Sbjct 3074  ATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTTA  3147

Query 1867  GAG------------------AAATATGACT-----GGGCA---------------------------------  1884
            |||                  ||||.|||||     |..||                                 
Sbjct 3148  GAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGGAGA  3221

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3222  CGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCTTCC  3295

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3296  CACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTTG  3369

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3370  GAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGGGGA  3443

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3444  GAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGCA  3517

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3518  TTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCCT  3591

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3592  TATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAGCCCAGCAGCGAAGAGTCACCCC  3665

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3666  AGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGATG  3739

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 3740  AGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACTTCG  3813

Query 1885  ---------------------------------------------------------  1884
                                                                     
Sbjct 3814  AGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTATATCTA  3870

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