Nucleotide Global Alignment
Description
- Query:
- TRCN0000478353
- Subject:
- XM_011247192.1
- Aligned Length:
- 3861
- Identities:
- 1642
- Gaps:
- 1986
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAA----------------------------------------------------------------------- 74
|||
Sbjct 75 CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT 148
Query 75 -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC 129
|||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct 149 CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC 222
Query 130 TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAA--- 200
||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||
Sbjct 223 TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC 296
Query 201 ------------------------ACCAGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCC 250
|.|||||||.||||..||||||||||||||.|||.|||||||.||.||||
Sbjct 297 AGGCCTGGAGCCAGAGGACCCTTCAGCAGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCC 370
Query 251 AGCCCTCTTCACTCGCTGCCAAGGGCTACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCCAGGATGCC 324
|||||||..||||.||||||||||||||.||||||||||||||||.||||.||.||||||||.||||||.||||
Sbjct 371 AGCCCTCCCCACTTGCTGCCAAGGGCTATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGGTGCC 444
Query 325 ACTTCCTCCAGTGCAGCCCAGCCGGAGGTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGG 392
||.||||||||..||||||.|.|.||||||||||||||.|||||||||||||||||||||||||| |||
Sbjct 445 ACCTCCTCCAGCTCAGCCCCGTCTGAGGTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGG 518
Query 393 GCAAGAAGGCACTGCCAGACCTCCAACACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCT 466
|||||||||||||||||||.|||||.||.||||||||||.|||||||||||||.|||..||||.|||||..||.
Sbjct 519 GCAAGAAGGCACTGCCAGAACTCCAGCATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCC 592
Query 467 CTGCCGCCTCACCTCTGACCTTCCCGACTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCAC 540
||||.|||||||||||||||||||||||.||.||||||||||||||||||||.|||||||||.|||||||||||
Sbjct 593 CTGCTGCCTCACCTCTGACCTTCCCGACACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCAC 666
Query 541 AGCCAGCCAGCCCGCGCCTCTGGCTCCTTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCC 614
||||||||||||.|.||.|.|||||||.|..||||...||||||||||.|||||.| |||||||||||||||
Sbjct 667 AGCCAGCCAGCCAGTGCTTGTGGCTCCCTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCC 737
Query 615 GCTGGTCCCTCCTGCCCCGGAGGACCTCCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCG 688
||||||||||||.|.||||||||||||||.|||||.|..|||||||||||||.||||||||||.||.|||||||
Sbjct 738 GCTGGTCCCTCCCGTCCCGGAGGACCTCCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG 811
Query 689 ATTCCAGTCCTCTACTAAATGAAGTTTCTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTT 759
.|||||||.|||||||.||||||||||||||||..||||.|||.||||||||||.||| ||||.||
Sbjct 812 ---GCAGTCCTTTACTAAACGAAGTTTCTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA--- 879
Query 760 AGCAAGCCTTCATCCGCCTATCCCTCCACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGA 833
||||..|||||.||.|||||.||||||||.||.||.|||||.|||||.|||||||||.||||.|||||||||||
Sbjct 880 AGCAGACCTTCGTCTGCCTACCCCTCCACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGA 953
Query 834 ACAGCAAAAACGACTCAGTAGCCTTTCAGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAA 907
.||||||||.|||||||||||.|||||||||||||.||||||.|||||||.|||.|||||||||.|||.|||||
Sbjct 954 GCAGCAAAAGCGACTCAGTAGTCTTTCAGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAA 1027
Query 908 CCCAGGAAAAACCCACCTCACCTGGCAAGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAG 981
|||..|.|.|||.|||.||.||.||||.||||..|||.|.|||.||||||||||..||.||.||||||||||.|
Sbjct 1028 CCCCAGCAGAACTCACTTCGCCCGGCAGGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGG 1101
Query 982 AGCACTCAGGACTTAAGCGATGTTTCCATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGA 1055
|||||.||||||.|.||||||||.||.|..||||||||||||||||||||||||||.||.|||.||||.|||||
Sbjct 1102 AGCACACAGGACCTGAGCGATGTGTCTACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGA 1175
Query 1056 CTGGTACAAGACTATGTTTAAACAGATCCACAAACTGAACAG-------------------------------- 1097
|||||||||.||||||||||||||||||||||||||||||||
Sbjct 1176 CTGGTACAAAACTATGTTTAAACAGATCCACAAACTGAACAGAGACACTCCTGAGGAAAACCCTTATTTCCCTA 1249
Query 1098 -------------------------------------------------------------------------- 1097
Sbjct 1250 CGTACAAATTCCCCGAGCTTCCAGAAATCCTGCAGAATTCTGAAGAGGACAGCTCTTACACTCCTACCTACCAG 1323
Query 1098 --------------------------------AGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTC 1139
||||||||||||.|||.|..|.||.||..||||.||.||.||
Sbjct 1324 TTTCCTGCATCTACGCCTAGTCCTAAGTCAGAAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTC 1397
Query 1140 TGAAGACACAAAATCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAG 1213
|||.||||||||.|||||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.|
Sbjct 1398 TGACGACACAAAGTCTCCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGG 1471
Query 1214 TCAAGAGGTCGGCCACACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGG 1287
|.||||||||.||||||||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||
Sbjct 1472 TTAAGAGGTCCGCCACACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGG 1545
Query 1288 GAACCCCCAGATAAGAAAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGG 1361
||.|||||||||||||||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.||
Sbjct 1546 GAGCCCCCAGATAAGAAAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGG 1619
Query 1362 CAAGTCTTCCGTTCTGACCAACGAAAAGAT-------------------------------------------- 1391
|||||||||.||.||||||||.||.|||||
Sbjct 1620 CAAGTCTTCGGTCCTGACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAAC 1693
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1694 CTTGGTATAAATTCTTTTCGGAATTGGAGTTTGGGAGACCGCCTCCCAAAAAGATATGGGACTATACTCCTGGA 1767
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1768 GACTGCTCTATCCTTCCTAGAGAGGATAGAAAGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTT 1841
Query 1392 ------------------------------------------------------------GAGCTCAGCCATCA 1405
|||||||||..|||
Sbjct 1842 AGAGGCAGATTTAGAGAAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCAGTCA 1915
Query 1406 GCCCTACTCCGGAAATTTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAGGGAA 1479
||||.|||||.||.|||.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||.|||
Sbjct 1916 GCCCGACTCCAGACATTACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAA 1989
Query 1480 TCAGACGGGGCTCCTGGGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAGGTGG 1553
||.||||||.|.||.||||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||||||
Sbjct 1990 TCGGACGGGACCCCCGGGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGG 2063
Query 1554 TGACATCCCTCTTCAGGGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGATTCAGAATCGC 1627
.||||||||||||||||||||.|||||||||||||||||.||||||||.||||||||||||||||||||.||.|
Sbjct 2064 CGACATCCCTCTTCAGGGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGAGTCAC 2137
Query 1628 CAAGACATTTTATACCAGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAG 1701
|||||||||||||||||||||||||||||||.|||||.||||||||||||||.|||||.||.||||||||||||
Sbjct 2138 CAAGACATTTTATACCAGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAG 2211
Query 1702 AAACTTTTAGCGGACCAGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGG 1775
|||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||
Sbjct 2212 AAACTTTTAGCGGACCAGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGG 2285
Query 1776 CGTCATTCCGACGCACCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAA 1849
.|||||.|||||.||.|||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.|
Sbjct 2286 TGTCATCCCGACTCATCATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCA 2359
Query 1850 AAAGGAAATCTGGGTCAGAG------------------AAATATGACT-----GGGCA---------------- 1884
|||||||||||||||.|||| ||||.||||| |..||
Sbjct 2360 AAAGGAAATCTGGGTTAGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTG 2433
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2434 CCTCTGCAGAAGGGAGACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGG 2507
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2508 CCGGGTGGGAATCTTCCCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGG 2581
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2582 CACCCGTACAAGTTTTGGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATG 2655
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2656 TCTTTCCGAAAGGGGGAGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGG 2729
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2730 GACATCTCGCCAAGGCATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGG 2803
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2804 ATTACATCGACCTGCCTTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGTATACTAGTCACAGC 2877
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2878 AAGCTCATCATGCCAGCCCCTTCATCTCTACCCCACCCCCGCCGAGCCCTGTCCCCTGAGATGCACGCCATCAC 2951
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2952 CTCCGAGTGGATCTCTCTGACTGTCGGGGTCCCAGGCAGGCGTTCTCTGGCCATGACACCACCCTTGCCTCCTC 3025
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3026 TGCCTGAGGCTTCTGTCTATGACATGGACCGCCTGGCCTTGTCAGCAAGGGCCCGTCCCTCCTTGCCTCTCAGC 3099
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3100 CTCCCCTATTCAAGTTGGTCAGATCACTCCACCCTGCGCCCAGTGGTCTCCCCGATGGCCCTGCCTCCACCCCA 3173
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3174 CAAAGCCTACTCACTGGCACCCAGTGTCCAGGCTCCTCTTCACGTCAATGGAGATGGTGGTATTCACATTCGCC 3247
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3248 AAGATGGCTTCTCCCAGCCACCACCTGGGAACTCTGATAGGGTCATCTCAGAGCTTAGTGACGCCTTTAGCAGC 3321
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3322 CAGAGCAAGAGACAGCCCTGGCGAGAAGATGGACCATATGACAGGAAAGCAGAGAGCGAGGCAGGTGAGAGATA 3395
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3396 CCCTGGTGGACCCAAGATCTCTAAGAAGAGCTGCTTGAAACCTTCAGACGTGGTCAGGTGCCTGAGTTCTGAGC 3469
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3470 AGAGACTCTCAGAGTTCCACACTCCTGAGGACAGTCAGTCCTGCAAGCCCCTGGGTGGCCCTTTCCCAGCCTGG 3543
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3544 GAGACTGGGCCACCAGAGCTGCACAGAGCTGTCGAGGCTGACAGGAAGGCTGCTCAGAGTGGTGTGAGCCAGCA 3617
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3618 ACCTCAAGCCCAGCAGCGAAGAGTCACCCCAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGT 3691
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3692 TATATAGTTATGTGCCACAGAACGATGATGAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAA 3765
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 3766 TGTGACGATGGATGGTTTGTTGGCACTTCGAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAA 3839
Query 1885 ------------- 1884
Sbjct 3840 ACCTTTATATCTA 3852
