Nucleotide Global Alignment
Description
- Query:
- TRCN0000478353
- Subject:
- XM_011247195.1
- Aligned Length:
- 3018
- Identities:
- 1641
- Gaps:
- 1143
Alignment
Query 1 ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA 71
|||||||||||||||||||.|| |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct 1 ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA 74
Query 72 CAA----------------------------------------------------------------------- 74
|||
Sbjct 75 CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT 148
Query 75 -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC 129
|||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct 149 CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC 222
Query 130 TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAAACC 203
||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||..|
Sbjct 223 TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC 296
Query 204 AGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGCTGCCAAGGGCT 277
||||||.||||..||||||||||||||.|||.|||||||.||.|||||||||||..||||.|||||||||||||
Sbjct 297 AGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCT 370
Query 278 ACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCCAGGATGCCACTTCCTCCAGTGCAGCCCAGCCGGAG 351
|.||||||||||||||||.||||.||.||||||||.||||||.||||||.||||||||..||||||.|.|.|||
Sbjct 371 ATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGGTGCCACCTCCTCCAGCTCAGCCCCGTCTGAG 444
Query 352 GTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTGCCAGACCTCCAAC 419
|||||||||||.|||||||||||||||||||||||||| ||||||||||||||||||||||.|||||.|
Sbjct 445 GTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTGCCAGAACTCCAGC 518
Query 420 ACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCTGACCTTCCCGA 493
|.||||||||||.|||||||||||||.|||..||||.|||||..||.||||.||||||||||||||||||||||
Sbjct 519 ATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCTCTGACCTTCCCGA 592
Query 494 CTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCGCCTCTGGCTCC 567
|.||.||||||||||||||||||||.|||||||||.|||||||||||||||||||||||.|.||.|.|||||||
Sbjct 593 CACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAGTGCTTGTGGCTCC 666
Query 568 TTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCCCCGGAGGACCT 641
.|..||||...||||||||||.|||||.| |||||||||||||||||||||||||||.|.||||||||||||
Sbjct 667 CTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCGTCCCGGAGGACCT 737
Query 642 CCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACTAAATGAAGTTT 715
||.|||||.|..|||||||||||||.||||||||||.||.||||||| .|||||||.|||||||.|||||||
Sbjct 738 CCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTACTAAACGAAGTTT 808
Query 716 CTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCGCCTATCCCTCC 786
|||||||||..||||.|||.||||||||||.||| ||||.|| ||||..|||||.||.|||||.||||||
Sbjct 809 CTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTGCCTACCCCTCC 879
Query 787 ACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTCAGTAGCCTTTC 860
||.||.||.|||||.|||||.|||||||||.||||.|||||||||||.||||||||.|||||||||||.|||||
Sbjct 880 ACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGACTCAGTAGTCTTTC 953
Query 861 AGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCACCTCACCTGGCA 934
||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|||.||.||.||||
Sbjct 954 AGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCA 1027
Query 935 AGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAAGCGATGTTTCC 1008
.||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|.||||||||.||.
Sbjct 1028 GGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCT 1101
Query 1009 ATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATGTTTAAACAGAT 1082
|..||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.|||||||||||||||||
Sbjct 1102 ACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGAT 1175
Query 1083 CCACAAACTGAACAG----------------------------------------------------------- 1097
|||||||||||||||
Sbjct 1176 CCACAAACTGAACAGAGACACTCCTGAGGAAAACCCTTATTTCCCTACGTACAAATTCCCCGAGCTTCCAGAAA 1249
Query 1098 ----------------AGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAAATCT 1155
||||||||||||.|||.|..|.||.||..||||.||.||.|||||.||||||||.|||
Sbjct 1250 TCCTGCAGAATTCTGAAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAAGTCT 1323
Query 1156 CCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGGCCAC 1229
||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||||||||.|||||
Sbjct 1324 CCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCAC 1397
Query 1230 ACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGATAAGA 1303
|||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|||||||||||||
Sbjct 1398 ACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAAGA 1471
Query 1304 AAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGTTCTG 1377
||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.|||||||||||.||.|||
Sbjct 1472 AAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTG 1545
Query 1378 ACCAACGAAAAGAT------------------------------------------------------------ 1391
|||||.||.|||||
Sbjct 1546 ACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTT 1619
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1620 TTCGGAATTGGAGTTTGGGAGACCGCCTCCCAAAAAGATATGGGACTATACTCCTGGAGACTGCTCTATCCTTC 1693
Query 1392 -------------------------------------------------------------------------- 1391
Sbjct 1694 CTAGAGAGGATAGAAAGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAG 1767
Query 1392 --------------------------------------------GAGCTCAGCCATCAGCCCTACTCCGGAAAT 1421
|||||||||..|||||||.|||||.||.||
Sbjct 1768 AAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCAGTCAGCCCGACTCCAGACAT 1841
Query 1422 TTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAGGGAATCAGACGGGGCTCCTG 1495
|.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||.|||||.||||||.|.||.|
Sbjct 1842 TACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCG 1915
Query 1496 GGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAGGTGGTGACATCCCTCTTCAG 1569
|||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||||||.|||||||||||||||
Sbjct 1916 GGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAG 1989
Query 1570 GGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGATTCAGAATCGCCAAGACATTTTATACC 1643
|||||.|||||||||||||||||.||||||||.||||||||||||||||||||.||.|||||||||||||||||
Sbjct 1990 GGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGAGTCACCAAGACATTTTATACC 2063
Query 1644 AGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACC 1717
|||||||||||||||.|||||.||||||||||||||.|||||.||.||||||||||||||||||||||||||||
Sbjct 2064 AGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGAAACTTTTAGCGGACC 2137
Query 1718 AGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGGCGTCATTCCGACGCAC 1791
|||||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.|||||.|||||.||.
Sbjct 2138 AGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCAT 2211
Query 1792 CATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAAAAAGGAAATCTGGGTC 1865
|||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||||.
Sbjct 2212 CATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTT 2285
Query 1866 AGAG------------------AAATATGACT-----GGGCA-------------------------------- 1884
|||| ||||.||||| |..||
Sbjct 2286 AGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGGAG 2359
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2360 ACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCTTC 2433
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2434 CCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTT 2507
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2508 GGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGGGG 2581
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2582 AGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGC 2655
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2656 ATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCC 2729
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2730 TTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAGCCCAGCAGCGAAGAGTCACCC 2803
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2804 CAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGAT 2877
Query 1885 -------------------------------------------------------------------------- 1884
Sbjct 2878 GAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACTTC 2951
Query 1885 ---------------------------------------------------------- 1884
Sbjct 2952 GAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTATATCTA 3009
