Nucleotide Global Alignment

Description

Query:
TRCN0000478353
Subject:
XM_011247195.1
Aligned Length:
3018
Identities:
1641
Gaps:
1143

Alignment

Query    1  ATGAGTTCTGAATGTGATGGTG---GTTCCAAAGCTGTGATGAATGGCTTGGCACCTGGCAGCAATGGGCAAGA  71
            |||||||||||||||||||.||   |.||.|||||||||.||||||||||||||.||||||.|.||||.|.|||
Sbjct    1  ATGAGTTCTGAATGTGATGTTGGAAGCTCTAAAGCTGTGGTGAATGGCTTGGCATCTGGCAACCATGGACCAGA  74

Query   72  CAA-----------------------------------------------------------------------  74
            |||                                                                       
Sbjct   75  CAAAGCCGACCCTTTCCGTGCTCGCTCTATATCTGCTGTTAAAATAATTCCCGTGAAGACAGTGAAAAGCCCTT  148

Query   75  -------------------AGACATGGATCCTACAAAAATCTGCACTGGGAAGGGAGCGGTGACTCTCCGGGCC  129
                               |||||||||.|||||.|||||||||||||||||.|||.|.||||||||.||||||
Sbjct  149  CAGGCCTAGTACTCCCTCCAGACATGGACCCTACCAAAATCTGCACTGGGAAAGGAACAGTGACTCTTCGGGCC  222

Query  130  TCGTCTTCCTACAGGGAAACCCCAAGCAGTAGCCCTGCGAGCCCTCAGGAAACCCGGCAACACGAAAGCAAACC  203
            ||||||||||||||||.||||||||||||.|||||||.||||||.||||||.|.|.|.|.||.||||||||..|
Sbjct  223  TCGTCTTCCTACAGGGGAACCCCAAGCAGCAGCCCTGTGAGCCCCCAGGAATCTCCGAAGCATGAAAGCAAGTC  296

Query  204  AGATGAGTGGAGGCTTTCTTCCAGTGCTGATGCCAATGGAAATGCCCAGCCCTCTTCACTCGCTGCCAAGGGCT  277
            ||||||.||||..||||||||||||||.|||.|||||||.||.|||||||||||..||||.|||||||||||||
Sbjct  297  AGATGAATGGAAACTTTCTTCCAGTGCAGATACCAATGGCAACGCCCAGCCCTCCCCACTTGCTGCCAAGGGCT  370

Query  278  ACAGAAGTGTGCATCCCAACCTTCCTTCTGACAAGTCCCAGGATGCCACTTCCTCCAGTGCAGCCCAGCCGGAG  351
            |.||||||||||||||||.||||.||.||||||||.||||||.||||||.||||||||..||||||.|.|.|||
Sbjct  371  ATAGAAGTGTGCATCCCAGCCTTTCTGCTGACAAGCCCCAGGGTGCCACCTCCTCCAGCTCAGCCCCGTCTGAG  444

Query  352  GTAATAGTTGTCCCTCTCTACCTGGTTAATACTGACAG------AGGGCAAGAAGGCACTGCCAGACCTCCAAC  419
            |||||||||||.||||||||||||||||||||||||||      ||||||||||||||||||||||.|||||.|
Sbjct  445  GTAATAGTTGTTCCTCTCTACCTGGTTAATACTGACAGAGGGCAAGGGCAAGAAGGCACTGCCAGAACTCCAGC  518

Query  420  ACCTCTGGGGCCTCTTGGCTGCGTCCCCACAATCCCAGCGACTGCCTCTGCCGCCTCACCTCTGACCTTCCCGA  493
            |.||||||||||.|||||||||||||.|||..||||.|||||..||.||||.||||||||||||||||||||||
Sbjct  519  ATCTCTGGGGCCACTTGGCTGCGTCCACACTGTCCCGGCGACCACCCCTGCTGCCTCACCTCTGACCTTCCCGA  592

Query  494  CTCTAGATGATTTCATTCCCCCTCATCTGCAGAGGTGGCCCCACCACAGCCAGCCAGCCCGCGCCTCTGGCTCC  567
            |.||.||||||||||||||||||||.|||||||||.|||||||||||||||||||||||.|.||.|.|||||||
Sbjct  593  CACTCGATGATTTCATTCCCCCTCACCTGCAGAGGCGGCCCCACCACAGCCAGCCAGCCAGTGCTTGTGGCTCC  666

Query  568  TTTGCCCCCATTAGCCAGACGCCACCATCCTTCTCACCACCACCTCCGCTGGTCCCTCCTGCCCCGGAGGACCT  641
            .|..||||...||||||||||.|||||.|   |||||||||||||||||||||||||||.|.||||||||||||
Sbjct  667  CTCTCCCCTGCTAGCCAGACGTCACCACC---CTCACCACCACCTCCGCTGGTCCCTCCCGTCCCGGAGGACCT  737

Query  642  CCGCAGAGTCTCGGAGCCTGACCTCACGGGAGCTGTTTCGAGTACCGATTCCAGTCCTCTACTAAATGAAGTTT  715
            ||.|||||.|..|||||||||||||.||||||||||.||.|||||||   .|||||||.|||||||.|||||||
Sbjct  738  CCACAGAGGCCTGGAGCCTGACCTCCCGGGAGCTGTCTCAAGTACCG---GCAGTCCTTTACTAAACGAAGTTT  808

Query  716  CTTCTTCCCTTATTGGAACTGATTCCCAAGCCTT---TCCATCAGTTAGCAAGCCTTCATCCGCCTATCCCTCC  786
            |||||||||..||||.|||.||||||||||.|||   ||||.||   ||||..|||||.||.|||||.||||||
Sbjct  809  CTTCTTCCCACATTGAAACCGATTCCCAAGACTTCCCTCCAACA---AGCAGACCTTCGTCTGCCTACCCCTCC  879

Query  787  ACAACGATTGTCAATCCTACTATTGTGCTCTTGCAACACAATCGAGAACAGCAAAAACGACTCAGTAGCCTTTC  860
            ||.||.||.|||||.|||||.|||||||||.||||.|||||||||||.||||||||.|||||||||||.|||||
Sbjct  880  ACCACCATCGTCAACCCTACCATTGTGCTCCTGCAGCACAATCGAGAGCAGCAAAAGCGACTCAGTAGTCTTTC  953

Query  861  AGATCCTGTCTCAGAAAGAAGAGTGGGAGAGCAGGACTCAGCACCAACCCAGGAAAAACCCACCTCACCTGGCA  934
            ||||||||.||||||.|||||||.|||.|||||||||.|||.||||||||..|.|.|||.|||.||.||.||||
Sbjct  954  AGATCCTGCCTCAGAGAGAAGAGCGGGTGAGCAGGACCCAGTACCAACCCCAGCAGAACTCACTTCGCCCGGCA  1027

Query  935  AGGCTATTGAAAAAAGAGCAAAGGATGACAGTAGGCGGGTGGTGAAGAGCACTCAGGACTTAAGCGATGTTTCC  1008
            .||||..|||.|.|||.||||||||||..||.||.||||||||||.||||||.||||||.|.||||||||.||.
Sbjct 1028  GGGCTTCTGAGAGAAGGGCAAAGGATGCTAGCAGACGGGTGGTGAGGAGCACACAGGACCTGAGCGATGTGTCT  1101

Query 1009  ATGGATGAAGTGGGCATCCCACTCCGGAACACTGAGAGATCAAAAGACTGGTACAAGACTATGTTTAAACAGAT  1082
            |..||||||||||||||||||||||||||.||.|||.||||.||||||||||||||.|||||||||||||||||
Sbjct 1102  ACAGATGAAGTGGGCATCCCACTCCGGAATACCGAGCGATCGAAAGACTGGTACAAAACTATGTTTAAACAGAT  1175

Query 1083  CCACAAACTGAACAG-----------------------------------------------------------  1097
            |||||||||||||||                                                           
Sbjct 1176  CCACAAACTGAACAGAGACACTCCTGAGGAAAACCCTTATTTCCCTACGTACAAATTCCCCGAGCTTCCAGAAA  1249

Query 1098  ----------------AGATGATGATTCAGATCTGTACTCTCCCAGATACTCATTTTCTGAAGACACAAAATCT  1155
                            ||||||||||||.|||.|..|.||.||..||||.||.||.|||||.||||||||.|||
Sbjct 1250  TCCTGCAGAATTCTGAAGATGATGATTCTGATGTCCATTCCCCTCGATATTCCTTCTCTGACGACACAAAGTCT  1323

Query 1156  CCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAGCTACATTGATGGTGAGAAGGTAGTCAAGAGGTCGGCCAC  1229
            ||||||||||||||||||||||||||||||||||.||||||.||.||.|||||.||.||.||||||||.|||||
Sbjct 1324  CCCCTTTCTGTGCCTCGCTCAAAAAGTGAGATGAACTACATCGAAGGGGAGAAAGTGGTTAAGAGGTCCGCCAC  1397

Query 1230  ACTACCCCTCCCAGCCCGCTCTTCCTCACTGAAGTCAAGCTCAGAAAGAAATGACTGGGAACCCCCAGATAAGA  1303
            |||.||.||||||||||||||.||||||||.|||||.|||.|.||||||||.||||||||.|||||||||||||
Sbjct 1398  ACTCCCGCTCCCAGCCCGCTCCTCCTCACTCAAGTCCAGCCCGGAAAGAAACGACTGGGAGCCCCCAGATAAGA  1471

Query 1304  AAGTAGACACAAGAAAATATCGTGCAGAGCCCAAGAGCATTTACGAATATCAGCCTGGCAAGTCTTCCGTTCTG  1377
            ||||.||.||.||||||||.||.|||||||||||.||||||||||||||||||||.|||||||||||.||.|||
Sbjct 1472  AAGTGGATACGAGAAAATACCGAGCAGAGCCCAAAAGCATTTACGAATATCAGCCGGGCAAGTCTTCGGTCCTG  1545

Query 1378  ACCAACGAAAAGAT------------------------------------------------------------  1391
            |||||.||.|||||                                                            
Sbjct 1546  ACCAATGAGAAGATGAGTCGGGATATAAGCCCAGAAGAGATAGATTTAAAGAATGAACCTTGGTATAAATTCTT  1619

Query 1392  --------------------------------------------------------------------------  1391
                                                                                      
Sbjct 1620  TTCGGAATTGGAGTTTGGGAGACCGCCTCCCAAAAAGATATGGGACTATACTCCTGGAGACTGCTCTATCCTTC  1693

Query 1392  --------------------------------------------------------------------------  1391
                                                                                      
Sbjct 1694  CTAGAGAGGATAGAAAGACTAATCTAGAGAAAGATCTCAGCTTCTGCCAAGCAGAGTTAGAGGCAGATTTAGAG  1767

Query 1392  --------------------------------------------GAGCTCAGCCATCAGCCCTACTCCGGAAAT  1421
                                                        |||||||||..|||||||.|||||.||.||
Sbjct 1768  AAAGTGGAGACCGTTAATAAATCACCCAGTGCAAACTCGCCACAGAGCTCAGCAGTCAGCCCGACTCCAGACAT  1841

Query 1422  TTCTTCAGAGACTCCTGGATATATATATTCTTCCAACTTCCATGCAGTGAAGAGGGAATCAGACGGGGCTCCTG  1495
            |.|.||||||.|||||||||||||.|||||||||||||||||||||||||||||.|||||.||||||.|.||.|
Sbjct 1842  TACGTCAGAGCCTCCTGGATATATCTATTCTTCCAACTTCCATGCAGTGAAGAGAGAATCGGACGGGACCCCCG  1915

Query 1496  GGGATCTCACTAGCTTGGAGAATGAGAGACAAATTTATAAAAGTGTCTTGGAAGGTGGTGACATCCCTCTTCAG  1569
            |||.||||.|||||||||||||||||||.||.||.|||||.|||||||||||||||||.|||||||||||||||
Sbjct 1916  GGGGTCTCGCTAGCTTGGAGAATGAGAGGCAGATCTATAAGAGTGTCTTGGAAGGTGGCGACATCCCTCTTCAG  1989

Query 1570  GGCCTGAGTGGGCTCAAGCGACCATCCAGCTCTGCTTCCACTAAAGATTCAGAATCGCCAAGACATTTTATACC  1643
            |||||.|||||||||||||||||.||||||||.||||||||||||||||||||.||.|||||||||||||||||
Sbjct 1990  GGCCTCAGTGGGCTCAAGCGACCTTCCAGCTCAGCTTCCACTAAAGATTCAGAGTCACCAAGACATTTTATACC  2063

Query 1644  AGCTGATTACTTGGAATCCACGGAAGAATTTATTCGAAGACGTCATGATGATAAAGAGAAACTTTTAGCGGACC  1717
            |||||||||||||||.|||||.||||||||||||||.|||||.||.||||||||||||||||||||||||||||
Sbjct 2064  AGCTGATTACTTGGAGTCCACAGAAGAATTTATTCGGAGACGGCACGATGATAAAGAGAAACTTTTAGCGGACC  2137

Query 1718  AGAGACGACTTAAACGCGAGCAAGAAGAGGCTGATATTGCAGCTCGACGCCACACAGGCGTCATTCCGACGCAC  1791
            |||||||||||||.|||||||||||||||||.||||||||||||||.|||||||||||.|||||.|||||.||.
Sbjct 2138  AGAGACGACTTAAGCGCGAGCAAGAAGAGGCCGATATTGCAGCTCGCCGCCACACAGGTGTCATCCCGACTCAT  2211

Query 1792  CATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGACGATACTGCAAAAAGGAAATCTGGGTC  1865
            |||||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||||.
Sbjct 2212  CATCAGTTTATCACTAATGAGCGCTTTGGGGACCTCCTCAATATAGATGATACGGCCAAAAGGAAATCTGGGTT  2285

Query 1866  AGAG------------------AAATATGACT-----GGGCA--------------------------------  1884
            ||||                  ||||.|||||     |..||                                
Sbjct 2286  AGAGATGAGACCTGCTCGAGCCAAATTTGACTTTAAAGCCCAGACCCTGAAGGAGCTGCCTCTGCAGAAGGGAG  2359

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2360  ACGTTGTTTACATCTACAGACAGATTGACCAGAACTGGTATGAAGGTGAACACCATGGCCGGGTGGGAATCTTC  2433

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2434  CCACGCACCTATATCGAGCTTCTTCCTCCAGCTGAGAAGGCTCAGCCCAGAAAGTTGGCACCCGTACAAGTTTT  2507

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2508  GGAATATGGAGAAGCCATTGCGAAGTTTAACTTTAATGGAGATACACAAGTAGAAATGTCTTTCCGAAAGGGGG  2581

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2582  AGAGGATCACGCTGCTCCGACAGGTGGATGAGAACTGGTACGAAGGGAGGATTCCTGGGACATCTCGCCAAGGC  2655

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2656  ATTTTCCCTATCACCTATGTAGATGTGCTTAAGAGGCCATTGGTGAAAACCCCTGTGGATTACATCGACCTGCC  2729

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2730  TTATTCTTCTTCCCCAAGTCGCAGTGCCACTGTGAGCCCACAGCAACCTCAAGCCCAGCAGCGAAGAGTCACCC  2803

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2804  CAGACAGGAGTCAGCCCTCACTGGATTTGTGTAGCTACCAAGCGTTATATAGTTATGTGCCACAGAACGATGAT  2877

Query 1885  --------------------------------------------------------------------------  1884
                                                                                      
Sbjct 2878  GAGTTGGAACTCCGAGATGGAGATATTGTTGATGTCATGGAAAAATGTGACGATGGATGGTTTGTTGGCACTTC  2951

Query 1885  ----------------------------------------------------------  1884
                                                                      
Sbjct 2952  GAGAAGGACGAGGCAGTTTGGTACTTTTCCAGGCAACTATGTAAAACCTTTATATCTA  3009

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