Nucleotide Global Alignment
Description
- Query:
- TRCN0000478886
- Subject:
- NR_003262.1
- Aligned Length:
- 5008
- Identities:
- 1108
- Gaps:
- 3778
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTAGTATTAACAACTTTGACCAGGAAAAACAAACCCTGCTTTTCCTTTACAGTCTCTCGTCAGGTCTTCGCCAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAATCTCTGTCCAGAGGATCGTGGCTGAGGCACCATGGAATGCTGCTGTTCTACTGGAGATGCAATTTCATCCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAGAAAAAGGGAAAAGTATCCAAAAGTCTTTCTAGTCTCCAGGCATTTAGAAAAGCTTTAGAACAAGATCTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTGGCACAAGAATTTGAGTGGAAATCACCCTGCCCAGCTGTGAGCCCCGGGGCGGGTGAGCCACACACTTGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TCTCACTGCAGTTGTGGCCTCTGGGAAGAAGGCTTTGAATGCAGATTTTAAACAGGTACTCAACTCATACTGAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCACGGCTACTTTCAACTTAACAATATGTGAGAAACCCATCTGATCACTGCAGACCTGCTGAAATCTGTTACAA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTAATCCTTCAATCCTCACCAGAATGCTGGCTGTCCTGCCTCTGCCGTCCCGAGAGAAGATGAAAGCTACTGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGCCACAGGGCAGTTATGTCCCCTTCTCTAGGTTCTGTGATTCTGGCAGTTAGAATGGGTTTCCAGACTTTTA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAAGCAGAAACCCTTATACATGTGATTATATGCTGTCCGTCAACATGTAAAACAGGCCAAGCGTGGTGGCTCAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACCTGTAATCTCAGCGTTTTGGGAGGCCAAGGTGGGAGGACCACTTGAGGCCAGGCGTTTGAGACCAGTCTGGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CAACATAGCAAGACCCTATCTCTTAAAAAAAAAAAAAGAAAAGAAAGAAAGAAAAGAAAAAGAAAAAGAAAAAG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAAAAAAAAGTAGGCCAGGCACGGATCACCTGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCCATCTCTACTAAAAATACAAAATTTGCCGGGCGTGGTGGCACATGCCTGTAATCTCACCTACTAGGGAGGCT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCGCCATTGCACTCCAGCCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GGGCAATAAGAGTGAAACTCAGTCTCAAAAAAAAAAAAAAAAAAAGTGAAACACAGAAATGTGGGACGTTGTTT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTGACACAGAGGTGGCCTCCATTCCTATTTTTCTTCAAGAGAACCATGAAGCTCCTTTGCAAAATAGGTGAGTT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTTTCTTTGAGACAGAGTCTCCTTCCATCACACAGGCTGGAGTGCAGTGGTGCGATCTTGGCTTACTGCAACC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCTGCCTCCCAGGCTCAAGTGATTCTCATGCCTCAGCCTCCTGAGTAGCTGGAACTACAGGTGTGCACCACACC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ACACCTGGCTAATTTTTGTATTTTTAGTAGAAACGGGGTTTCGCTATGTTGGCCAGGGCTGGTCTCAAACTCCT 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 GGCCTCAAGTGATCTGCCCATCTCGGTCTCCTCAAGTGCTAGGATTACAGATGTGAGCCACTGCACCTGACTGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAAATGGGAGAGTTCTGAGAAGTGTGGACTGGAAACCAGTGAGAGGAGGTAACTTCTAGAACCTCTTCCCAGCT 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTGATTCCACTAACATGGTCTAAACTTTCCAAACTCAACCCACACCACCGTTAAAGTCCTTATTTTCTAAGCCG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTTCTCTTTCGGGCACTTTCCAGGAGGCCTGGGCCTGAAACTCCACACCCCACCAGCTGACACACTGTGCGTGA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CCTGGAACTAGAAATGACCTTCTCACAGGGCAGATGGCCACCCACGGGGGATGTCTTGTTAGAAAGCCTCTCCA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AAGACCTGGGAGAGTCAAATCCTGACACAAACATATCAAAGAAATGTTCTACTTTACTAGAAATTTTGTTTAAA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ACATACAAGTTAAAATCAGCGGCTGAGCATGGTGGCTCACACCTATAATCTTAGCTACTCGGGAGGTGGAGGGA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AGAGGATTGCTTGAGGCCAGGAGGTCAAGACCAGCCTGGGCAACACAGAGAGACCCCCATCTCTATTTATTAAA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AAAAACGGAAAAGAAAACAATTTGGTAATATATGTATCAAGAGGTTTAAAAATGTTCACTTCCTTTGATCCAAT 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AATTAAGACTCTAACTTCAGAAAATTATAGAAAAATTTTGACGTGAAGCTATTCACTACAGCACTGTCTCTATT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 ACATAAAACAGAAGCATAGGGCAAACTCCATAGAAGTCAATAAAATGTTAACAGCTGTCTTTGAGTGGAGAAAC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GATAGAAGACCTTTTTTTTTCTTTTTTTTTAAACTTGCTTCTTTTCTTCTTCATATATAGGAGACGTTTTGTTT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GACTTCCTTATATATCTGAACTTTTCACATTTTCTAAAGTGAGAAAGTATTACTTCTATTATCAGAAAAAAACT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 CTCCTGGCCAGGTGCAGTGGCTCATGCCTGTAATCCCCAGCACTTTGGAAGGCTGAGGGGGGCGGATCATCTGA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GGTCAGGAGTATGAGACCAGCCTGGCCAACATGGTGAAATCCCGTCTCTACTAAAAATACAAAAATTAGCTGGG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CATGGTGGCATGCACCTGTAATCCCAGCTACCTGGGAAGCTGAGGCAGGAGAATCCCCTGAACCCAGGAGGCGG 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AGGTTGCAGTGAGCCGAGAACTGCACCACTGCACTCCAGCCTGGGCAACATGAGCCTCAAAAAACAAAACAAAA 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 AACAAACCTCCCTTAAAATGCCAAACACTTTTAAAAGGTCATAAATATAAACCAAACCACCACCACCGCTGTGT 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTTACCATTATTACTTTAAATGGCTGCTGCTATCCCAGTGTAGTTTCACTAATATCAGGCCCTGTCAACTTACC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ATGGCACCTCCCTGACAGCAGACACATCCCCCCATCCCCGAGCTCCACAAAAATGGAAGAACAAACCATCCATG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TTCCTATGACAGTAGTCCTGTGAGCACGGCGAGATGGGGCTTTGCTTGAAAAGGGATCACTCAGGCCAGTGCCT 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CCCACGTCTTACTGGAAGATGGCACGAAACTAGCATGTGATTTGTCTCTTGCACAGTGGGTGGCCGGAAGGGAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GTGACAACTCTTCTGGCTGGGGCCTCCAGGGATAGGTCAGAGCAGAACCTTCCAAAGGGCACCCATGGTGCCGG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CCCCAGTAACCTACAATTCCCTTGTGGTCAACCAGCTTCTCCAGAACCAAGAACCCACTGGCTCCTGGGTGGCC 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 AAGAGCAATCTGACCACCTGCAGCCAGTCAGAAGGTGGAGCCCTGGTTTACGGGCCTACCCAGAGGGCAAAGTA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 GGGGAGTAATAGGGGCAGCAGTGGATGTGTAATGGTAACAGTAATAGCAGGCCTGGTGCAGTGGCTCACACCTT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GTGATCCCAGCACTTTGACTGGCTGAGGCAGAAGGACTGCTTTGAGCCCAGGGGTTCAAAGTTGCAGTGAGCTA 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 TGATCGTGCCACTACACTCCAACCTGGGCAACAGAGCGAGACCCTGTCTCTTTAAAAAAAAATAAATAACAGCC 3478
Query 1 --------------------------------ATGCCCCTGTCCCGCTGGTTGAGAT----------CTGTG-- 30
.|||.|| ||||.|.|..||| || |||.|
Sbjct 3479 AAGCAGGAACCCGCATCCAGGAACACAGCCCTTTGCTCC--TCCCTCAGAATGA-ATGGAAACCAGGCTGGGCG 3549
Query 31 -GGGGTCTTCCTGCTG-----CCAGCCCCCTACT---------------GGGC--ACCCCG------GGAGA-- 73
||.|.||..|..||| ||||| ||| |||| |.|.|| |||||
Sbjct 3550 CGGTGGCTCACACCTGTAATCCCAGC-----ACTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATC 3618
Query 74 --------GGTGGCT----GGGT---------TCCCTAC----------------------GGCGGCCCTCCCT 104
.|||||| .||| ||.|||| |||| .
Sbjct 3619 GAGACCATCGTGGCTAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAATTAGCCGGGCG--------C 3684
Query 105 GGTGCACGGGTACC--CAGTCCTGGC--CT-----GGCACAGTGCCCGCTGCTGGTGCCAA--GCGTGGACAGA 167
|||| .|||||.|| .|||||.||| || |||..|| ||.||.| || |||||.||..|
Sbjct 3685 GGTG-GCGGGTGCCTGTAGTCCCGGCTACTAGGGAGGCTGAG--------GCAGGAG--AATGGCGTGAACCCA 3747
Query 168 GGAA-----------------CC----TCGAGCC-CTTTGCTC----------------------CTCCCTC-- 195
|||| || |||.||| ||...||| ||||.||
Sbjct 3748 GGAAGTGGAGTTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCGACAGAGCAAGACTCCGTCTC 3821
Query 196 ----------------------AGAATGAACGGAGACCAGAATTCAGATGTTTATGCCCAAGAAAAGCAGGATT 247
||||.|||.|||.|||||||.||||||.||||||||||||.|||||||||||
Sbjct 3822 AAAAAAAAAAAAAAAAAAAAAAAGAACGAATGGAAACCAGAAATCAGATATTTATGCCCAAGCAAAGCAGGATT 3895
Query 248 TCGTTCAGCACTTCTCCCAGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGAGATAGGAGATGCT 321
||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 3896 TCGTTCAGCACTACTCCCAGATCGTTAGGGTGCTGACTGAGGATGAGATGGGGCACCCAGAGACAGGAGATGCT 3969
Query 322 ATTGCCCGGCTCAAGGAGGTCCTGGAGTACAATGCCATTGGAGGCAAGTATAACCGGGGTTTGACGGTGGTAGT 395
|.|||||||||||||||||||||||||||||||||||||||||||||||||.||||.|||||||.||||.||||
Sbjct 3970 ACTGCCCGGCTCAAGGAGGTCCTGGAGTACAATGCCATTGGAGGCAAGTATCACCGAGGTTTGATGGTGCTAGT 4043
Query 396 AGCATTCCGGGAGCTGGTGGAGCCAAGGAAACAGGATGCTGATAGTCTCCAGCGGGCCTGGACTGTGGGCTGGT 469
|||.||||||||||||||||||||.|||||||.|||||||||||||||||||.||||...||||||||||||||
Sbjct 4044 AGCGTTCCGGGAGCTGGTGGAGCCGAGGAAACTGGATGCTGATAGTCTCCAGTGGGCACCGACTGTGGGCTGGT 4117
Query 470 GTGTGGAACTGCTGCAAGCTTTCTTCCTGGTGGCAGATGACATCATGGATTCATCCCTTACCCGCCGGGGACAG 543
.||.|.|||||||||||||||||||||||||||||||||||||.||||||||||||||||||.|||.|||||||
Sbjct 4118 ATGCGCAACTGCTGCAAGCTTTCTTCCTGGTGGCAGATGACATTATGGATTCATCCCTTACCTGCCAGGGACAG 4191
Query 544 ATCTGCTGGTATCAGAAGCCGGGCGTGGGTTTGGATGCCATCAATGATGCTAACCTCCTGGAAGCATGTATCTA 617
||||.||||||||||||||.||||.|||||||||||||||||||||||||||.|||.|||||||||||||||||
Sbjct 4192 ATCTCCTGGTATCAGAAGCTGGGCATGGGTTTGGATGCCATCAATGATGCTATCCTTCTGGAAGCATGTATCTA 4265
Query 618 CCGCCTGCTGAAGCTCTATTGCCGGGAGCAGCCCTATTACCTGAACCTGATCGAGCTCTTCCTGCAGAGTTCCT 691
|.|||||||||||||.|||||||||||||||||||||||||||||||||||.||||||||||.|||||.|||.|
Sbjct 4266 CTGCCTGCTGAAGCTGTATTGCCGGGAGCAGCCCTATTACCTGAACCTGATGGAGCTCTTCCAGCAGAATTCTT 4339
Query 692 ATCAGACTGAGATTGGGCAGACCCTGGACCTCCTCACAGCCCCCCAGGGCAATGTGGATCTTGTCAGATTCACT 765
|||||||||||||||||||||||||.||||||.|||||.|||||||||||||||||||||||..|||||.|||.
Sbjct 4340 ATCAGACTGAGATTGGGCAGACCCTCGACCTCATCACAACCCCCCAGGGCAATGTGGATCTTCGCAGATGCACC 4413
Query 766 GAAAAGAGGTACAAATCTATTGTCAAGTACAAGACAGCTTTCTACTCCTTCTACCTTCCTATAGCTGCAGCCAT 839
|||||.|||.||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 4414 GAAAAAAGGCACAAATCTGTTGTCAAGTACAAGACAGCTTTCTACTCCTTCTACCTTCCTGTAGCTGCAGCCAT 4487
Query 840 GTACATGGCAGGAATTGATGGCGAGAAGGAGCACGCCAATGCCAAGAAGATCCTGCTGGAGATGGGGGAGTTCT 913
|||||||.||.||||.||||.|.|||||||||||.|||.||||||||||||||||||||||||....|||||||
Sbjct 4488 GTACATGTCAAGAATGGATGACAAGAAGGAGCACACCAGTGCCAAGAAGATCCTGCTGGAGATTCAAGAGTTCT 4561
Query 914 TTCAGATTCAGGATGATTACCTTGACCTCTTTGGGGACCCCAGTGTGACCGGCAAAATTGGCACTGACATCCAG 987
||||||||||||||||||||||||||.|||.||||||||||||||||||.||||.|.||||||.||||.|||||
Sbjct 4562 TTCAGATTCAGGATGATTACCTTGACTTCTCTGGGGACCCCAGTGTGACTGGCAGAGTTGGCAATGACTTCCAG 4635
Query 988 GACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCAACGGGCCACTCCAGAACAGTACCAGATCCTGAAGGA 1061
|||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||||||
Sbjct 4636 GACAACAAATGCAGCTGGCTGGTGGTTCAGTGTCTGCTACAGGCCACTCCAGAACAGTACCAGATCCTGAAGGA 4709
Query 1062 AAATTACGGGCAGAAGGAGGCTGAGAAAGTGGCCCGGGTGAAGGCGCTATATGAGGAGCTGGATCTGCCAGCAG 1135
|||||||.|||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||||||||.|
Sbjct 4710 AAATTACAGGCAGAAGGAGGCCGAGAAGGTGGCCCGGGTGAAGGCACTATACGAGGAGCTGGATCTGCCAGCCG 4783
Query 1136 TGTTCTTGCAATATGAGGAAGACAGTTACAGCCACATTATGGCTCTCATTGAACAGTACGCAGCACCCCTGCCC 1209
||||||||||.||||||.|||||||||||||||||.||||||.||||||.|||.|||||||||..|||||||||
Sbjct 4784 TGTTCTTGCAGTATGAGAAAGACAGTTACAGCCACGTTATGGGTCTCATCGAATAGTACGCAGAGCCCCTGCCC 4857
Query 1210 CCAGCCGTCTTTCTGGGGCTTGCGCGCAAAATCTACAAGCGGAGAAAG-------------------------- 1257
||||||.|||||||||||||||.||.|||||||||||||.|||.||||
Sbjct 4858 CCAGCCATCTTTCTGGGGCTTGTGCACAAAATCTACAAGTGGAAAAAGTGACCTAGAGACTGCAAGGGCGGGGA 4931
Query 1258 -------------------------------------------------- 1257
Sbjct 4932 GAGAAGGCTCTCAATAAGTAAATTATTGTGTAAAATAAATAAATAAATGA 4981
