Nucleotide Global Alignment

Description

Query:
TRCN0000479053
Subject:
XM_017016938.2
Aligned Length:
2045
Identities:
1930
Gaps:
94

Alignment

Query    1  ATGG--AACTTGAAAATG-------ATTATTGCTTGAATGATTACAACAT-------------TTCAGA-----  47
            ||||  ||| .||||| |       |||    |||.||||||.|.|||||             |.||||     
Sbjct    1  ATGGATAAC-AGAAAA-GAGCCTCCATT----CTTCAATGATGATAACATGGGACCATTTTACTACAGACTTCA  68

Query   48  ----------AGGGTGGA------CCTTGAAGC--TA----------GTTTTG-GCTATGCGTGGCGGACCTAT  92
                      |...||||      |.|||||.|  ||          |||||| |||..|.||..|  ||||.|
Sbjct   69  TTTCTGTGATACCATGGAGCTCTTCATTGAAACATTAACTGGAACATGTTTTGAGCTGAGAGTTTC--ACCTTT  140

Query   93  ------------------------AAATACTAGAAG------AGTTCCTACAGACGATCCACTTAGGACGATGG  136
                                    |||.|.|.||||      ||||||||||||||||||||||||||.|||||
Sbjct  141  TGAAACTGTTATTTCTGTGAAAGCAAAAATTCGAAGATTGGAAGTTCCTACAGACGATCCACTTAGGAAGATGG  214

Query  137  CAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTA  210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  215  CAGAGTACTTGGATTCCAGTCGAGTTGAGGTCTGGGAGAAGACCTCCTGCAGCAAACAAGTTACATTTTTGGTA  288

Query  211  TACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGA  284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  289  TACCAAGAAGGAGATCAATTGAATTTCTTTCCTGCAGTAGATAGGGGAGATGGCACTTTAACACCGTTATCTGA  362

Query  285  CTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTA  358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  363  CTCTTCAAAGAAAATAGATTTTCATTTGCATGTCCTACGGAGAAAAGGAGAACATCGTATGAGTGGTGGTTCTA  436

Query  359  TGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCA  432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  437  TGTATAATTCAGATACAGATGAGGATGAAGAAACTGAGCCTTCTTCTTCTGGGCAACAGATAATTGAAAATTCA  510

Query  433  ATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGC  506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  511  ATAACTATGAATAAGATGAAGCTGCTGAAGGCTAAGATGAAGAACATGAATCTCAGCAAAAAGCCTAAGAAAGC  584

Query  507  TGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGAT  580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  585  TGTCAAGATAAAACCTCACCCACCTGTAGCTCCTCGACCTTCTAGTGGTTCCACTGCACCATCTCGCCACCGAT  658

Query  581  TGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCC  654
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  659  TGTTAAGGGTCCTCCCCAACATTGGTCAATCTTGTTCACCTGCTTTTGGGAATGCATATCCGCCCGAAATCTCC  732

Query  655  AGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCT  728
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  733  AGGAATGGAATTTCAAGTTTGGCAACTCAACTCTCTGCTGAGAGATACATATCTTCTATCACTGGTGAATTTCT  806

Query  729  TAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATAC  802
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  807  TAAGGAAGATAATAGCTGGGAGAATAACACACTGTCTCACTTCAGTAGCAACGTCAAACTACCTCCTCAGATAC  880

Query  803  CCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAA  876
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  881  CCCATTTGGAGTTGGGAAATGACCAGGAGCTTGCTGACTCTGTTCTCCATCTTGGATCATCCCTGCCTAGGCAA  954

Query  877  ACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGA  950
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  955  ACAAAACATTTTTTAGGAAACTTGCCATCTAGTAATGGGAACATTGTCTTACCTTCAGAAGAATGTGTAACCGA  1028

Query  951  ACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCT  1024
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029  ACAATCACTTCTACCTAAAGTGGGCTCACTGGCTTCATTTGCAGAAGGAAATGCTGATGAACAGAGCAGCGGCT  1102

Query 1025  TAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAG  1098
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103  TAGAAGGTGCGTGCAAAGTGAATCTGGAGTTGCTACTCACTAATGCTGACAAAGGGTTGAAAGCTCCAGAGCAG  1176

Query 1099  CATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAG  1172
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177  CATCTCAAGCATGTTGCAGGAGTGCTGAATGGGGAATCAGTAGAGACTTCAGTTCTTAACTACCGGGAATTAAG  1250

Query 1173  TCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAAC  1246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1251  TCCTCACAAGAATAGACTCTTGTCACCTCTTCGCTGTTCTGCACCAATGTCGCTACATAATTCTCTGGTGAAAC  1324

Query 1247  CAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAAC  1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1325  CAGAGAGACAGTCCAAATGTTTTGAGTTTGGGAAGCTACAGCCTTCTTCTTCTCAGTCACTGGATGTTCAAAAC  1398

Query 1321  ATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCGCTTGGGAAAAGATCTGA  1394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 1399  ATAACTGATTCTTCTTTCTCTAGGACTACTTGCTTTCAAGGTGTTAAAGTTGATTCACTTGGGAAAAGATCTGA  1472

Query 1395  TGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTG  1468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1473  TGTTATTTCCAAAGTTGAGGCTCGGGATATCACAGAAATGACTAACAAGGCTTCCAAAGAGCCTGTTGGTTGTG  1546

Query 1469  TAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCA  1542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547  TAAATAATATCAGTTTTCTTGCCTCACTGGCCGGGAGCACAAGCAGAAATAGATTACAGAGCACACGTGGGGCA  1620

Query 1543  GGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAG  1616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621  GGCAGGCTTCAGAACTCTGGAACTGGGCTGTCTACAAACCTCCAGCATTTTCAGGAAGAAAACTTTAGGAAAAG  1694

Query 1617  TTCTCCCCAGTTAGAACATACAGGAGTTTTTTTGTCTACCCATGGTGTTGGAATGAATGGAAATAATGCAGCAG  1690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1695  TTCTCCCCAGTTAGAACATACAGGAGTTTTTTTGTCTACCCATGGTGTTGGAATGAATGGAAATAATGCAGCAG  1768

Query 1691  CAGGGAAAAGCGTAGGAGAATGTACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAA  1764
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1769  CAGGGAAAAGCGTAGGAGAATGTACTACTCATCACCTCCCACCTGTGAAAGCCCCTCTTCAGACAAAGAAGAAA  1842

Query 1765  ACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAA  1838
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1843  ACAACAAATCATTGTTTTCTTTGTGGAAAGAAAACAGGACTGGCTAGTAGCTACGAATGCAGATGTGGAAACAA  1916

Query 1839  CTTCTGTGCATCTCATCGTTATGCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACT  1912
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917  CTTCTGTGCATCTCATCGTTATGCAGAAACTCATGGCTGTACCTATGATTACAAGAGTGCAGGGAGGAGATACT  1990

Query 1913  TGCACGAGGCAAATCCTGTGGTTAATGCACCAAAGCTTCCAAAAATC  1959
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991  TGCACGAGGCAAATCCTGTGGTTAATGCACCAAAGCTTCCAAAAATC  2037

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.