Nucleotide Global Alignment

Description

Query:
TRCN0000479117
Subject:
NR_028109.1
Aligned Length:
3977
Identities:
1097
Gaps:
2745

Alignment

Query    1  ATGTCT--ATTTCCT-----------TGAGCTCTTTAATTTTGT-----TGCCAAT-TTG---GATAAA-----  47
              ||.|  |||.|||           .|.||..|..||.||.||     .||..|| |||   ||.|||     
Sbjct    1  --GTTTAAATTCCCTGCAGACCCGGAAGTGCAATCGAACTTGGTCGGGGCGCGGATCTTGAGAGAGAAAGTCCG  72

Query   48  ---CATGGCACAAATCCAGCAGGGAG---GTCCAGA----TGAAAAAGAA----AAGACT------ACC-----  96
               ||.|||.||        ||||||   |.|||||    ||     |||    |.|.||      |||     
Sbjct   73  AGCCAGGGCGCA--------AGGGAGTTCGCCCAGAGATCTG-----GAAGGCCACGCCTCCTCGCACCTACCC  133

Query   97  -----GCACTGAA----------------AGATTTATTATCTAGGATAGATTTGGATGAACTAATGAAAAAAGA  149
                 |||.||.|                ||||||..|.||||||||.||||||||||||||.||||||||.||
Sbjct  134  TCTCAGCATTGCAGCTGGGGACAGAGCTCAGATTTGCTGTCTAGGATCGATTTGGATGAACTCATGAAAAAGGA  207

Query  150  TGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGACAGTTAAGAC  223
            .|||||.|||.||||||||||.|||||.||||||||.||||||||||||||||||||||||||.||||||||||
Sbjct  208  CGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTTAATGAAAAGGGGCAGTTAAGAC  281

Query  224  ACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAAAGATACGAG  297
            |||||||||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||||||||.||.
Sbjct  282  ACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGAGAAGACTTACACAGGTGGAACCAGAAAAGATATGAA  355

Query  298  GCTCTAGGAGAG-------------------------------------------------ATCATCACGAAG-  321
            |||||.||.|||                                                 |||||||| ||| 
Sbjct  356  GCTCTGGGCGAGGGCTTAATACCTGTCTAGCCACAGGATTTTGACTTGATACTGGTGCCAAATCATCAC-AAGA  428

Query  322  TATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAAAAGTATCTATTCCAGTAGATGCCACTGAGAGTGA  395
            |||||.||||||||||||||||..||.|||||||||||||||.|.|||||||||||||||||||||||||||||
Sbjct  429  TATGTTTATGAGCTCCTGGAAAGTGACTGTAATTTGAAAAAAATCTCTATTCCAGTAGATGCCACTGAGAGTGA  502

Query  396  ACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACAGAAACTGATGGTTTTAATTCATGGTA  469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  503  ACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACAAATCCACAGAAACTGATGGTTTTAATTCATGGTA  576

Query  470  GTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTATTATAAATGAAGATCTGGACAGTGGCACACAGATA  543
            |||||||||||||||||||.||||||||||||||.||||||||.||||||||||||||||||||||||||||||
Sbjct  577  GTGGTGTTGTCAGGGCAGGTCAGTGGGCTAGAAGGCTTATTATTAATGAAGATCTGGACAGTGGCACACAGATA  650

Query  544  CCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAATAGTACTAAATCCCAATGAAAACTATATTGAAGT  617
            ||.||||||||.||||||.|||.||||||.||||||||.||.||.||.||.||.||||||||||||||.|||||
Sbjct  651  CCTTTTATTAAGAGAGCTATGGATGAAGGGTATGGAGTCATCGTCCTGAACCCAAATGAAAACTATATAGAAGT  724

Query  618  AGAAAAGCCGAAGATACACGTACAGTCATCA---TCTGATAGTTCAGATGAACCAGCAGAAAAACGGGAAAGAA  688
            .|||||||.|||.||.||...||||||||||   ||||||.||.|||||||.|||||||..||.||||||||.|
Sbjct  725  GGAAAAGCAGAAAATGCATAAACAGTCATCATCTTCTGATGGTACAGATGAGCCAGCAGGGAAGCGGGAAAGGA  798

Query  689  AAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTTCTATGAGAAGTATCGTAACCCCCAAAGAGAAAAA  762
            .||||||.||.||.||.||||||||||||||.||||||||||||||||||||.||.|||||.||||..||.|||
Sbjct  799  GAGATAAGGTCTCCAAGGAAACAAAGAAGCGTCGTGATTTCTATGAGAAGTACCGCAACCCTCAAAAGGAGAAA  872

Query  763  GAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTGAAGAACATGCAATCTATGTTTGGGATCATTTCAT  836
            |||||||||||.||||.||||||.||||||||||||||||||||.|||||..|||||||.|||||.||||||||
Sbjct  873  GAAATGATGCAGTTGTTTATCAGGGAAAATGGTTCTCCTGAAGAGCATGCGGTCTATGTGTGGGACCATTTCAT  946

Query  837  AGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCACAGCTATGGAGGACTTGCTTTTGTTGAACTGATGA  910
            |||.|||||||||||||||||||||||.||.||.|||||.||||||||||||||||||||||||||||||||||
Sbjct  947  AGCCCAGGCTGCTGCTGAGAATGTGTTCTTTGTGGCTCATAGCTATGGAGGACTTGCTTTTGTTGAACTGATGA  1020

Query  911  TTCAACGAGAAGCCGATGTAAAAAATAAGGTAACTGCTGTGGCATTGACAGACTCTGTTCACAATGTGTGGCAT  984
            |||||||||||||.||||||||||.||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021  TTCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGTGGCATTGACAGACTCTGTTCACAATGTGTGGCAT  1094

Query  985  CAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAGAACTGTTGTAATTGGGTCTCTAGCTCAGAACCATT  1058
            |||||||||||||||||.||.|||||||||||||||||||||||||||||.||||||||.||||||||||||||
Sbjct 1095  CAAGAAGCTGGCAAAACCATCCGAGAATGGATGAGAGAGAACTGTTGTAACTGGGTCTCCAGCTCAGAACCATT  1168

Query 1059  AGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGGGTCTCAGCAGGCACCGACCGTCACGAGCTAACTT  1132
            |||.|||||.|||||.||||||||.|||||.||.|||.|.||.||.|||||||||||||||||||||||.||||
Sbjct 1169  AGATACATCGGTGGAATCCATGCTGCCTGACTGTCCCAGAGTGTCTGCAGGCACCGACCGTCACGAGCTCACTT  1242

Query 1133  CCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTACCGAAGCCTCAGAGGCCAAGACCAGCTCCCTGAAGCCG  1206
            |||||||||||||.||||||||.|||||.|||||..|.||||||||.||||||||||.||||||.|.|||||||
Sbjct 1243  CCTGGAAGAGCTTCCCGTCTATCTTCAAGTTCTTCGCGGAAGCCTCGGAGGCCAAGAGCAGCTCGCAGAAGCCG  1316

Query 1207  GCTGTGACGCGCCGCTCCCACCGCATCAAGCACGAAGAGCTG--------------------------------  1248
            ||..|||||||.|||||.|||||.|||||||||||.||||||                                
Sbjct 1317  GCCCTGACGCGGCGCTCGCACCGGATCAAGCACGAGGAGCTGTGAGCGCGCAGCCGCCCGCCCGCCGCCCGTAG  1390

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1391  CCTCCTGGCCCCCATTAGATTGCTTTCTTTCTCCAGCGCAGGGTCGTGATGTGTCCGTCTAAATAGCGTTTTGC  1464

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1465  ATTATTTCTAGATGAGTGCAACTGTCAAAGCAATATGGCTTCAGCGGCCGAGTTGCCTGCGGCTGAGCCGGGCC  1538

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1539  TCGCACTGTGGGCCCCGGCGACCGAGGCTGAAAGCGCCGGGAGTGCCAGCGCCGGGCGCTCCTAATTGCCCGGC  1612

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1613  TGATCCGCGGGCGCGGCTGGCCGAGCGGCGTCTGCGCGGTCCTACCGCCCGCTGCAGCGCGGTCGCCGCTGCCC  1686

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1687  AGCCTCAATTGTGCCCATTTTTAATCCCCTTTAAACCCAGCAAGCTTTTATTCTAAACCTCAAACTTGATTTTA  1760

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1761  ACCAGGTTTTTTCCTCAGGTCATCTAATGAGCCTCTGTCTTTTACACAAAGCCACACACTCGAGTCCTAAAAAT  1834

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1835  GCCAACTTTAAATTCAGAACATGATGGACTATGTAGTTTGGGGAGTACAAGTTCTTTCTCCCTATAACGACTTA  1908

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1909  TTTTCACTTCAACCCCCCCCCCCAAAAAAAAAAAAACTGTACATGAAGTACCGAATCCGAATCCTCATTTGTGC  1982

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1983  CCAGTTGAACTCCAGTCTTTATGTCTCTGATTTCAGGAGGGAATGTCGAAAGGAAAATATAAACAGATCTTTTA  2056

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2057  GATGTAGGTATAAGTCTCCATGTTCAGTGAATTTTCCAGTTACTTATAAGAACTGACCTTACTATTAAAATATA  2130

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2131  TAACACGATGTGTGCGCCAATGCAGGGTGATGGTGGTGGCTGTTGATCCTTACAACCTGTACTTTCACCTTTCT  2204

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2205  TGTAGCGTGCCCTGTCAGATGCAGGACTTTTTTACTATCATCAAGAAAATAAAACTACATAACCTCTTTCTTCC  2278

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2279  AAAAGTCCAAGTAGGGTTAATGTGCTTCAGTTTTCATCTGCAGTAGGAAAAGAGAGGCGTAGTGTGAATGGGTT  2352

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2353  GCTCTTTTGAGGCCAAAATGTTTACTGTTCTCTTCCTGTGATAGGGCGCTGCCCTGTAATTCCAACAGTAAGGC  2426

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2427  CAACGCGGAAGATAAAATAAGTTGACATTTTACTGGCTTTTGAATTAAAGCATTAGACATTAATTACTTGAAAT  2500

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2501  TTTTAATTAGTGAAGGTTATATCCAGTGCATGGTGAGATTGTGATTTAATACATCCATCCTTTTTAAAATGAAT  2574

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2575  GCAATAAGTAATTTGTCTACCTTGTTTGAGACCTTGAGACAGTATAAGCAAAATGAGTCTGAGTTGCTAATGAC  2648

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2649  AGGGAAGAAAACCTGAGCTCAGCCACCTCATGAGGAATACTCTCATCCCATGAACTGATTTTAGCAAGGTTTAA  2722

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2723  ACTGGTAACATGTCATGCTCTTTGCACATGCATACATTCAGTAATTCTGTAAGGACAGTAAAGTCCTCAGTGCC  2796

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2797  ATGGCTGGGCATCTCCTGACATTACTTAGGCAGAAGTACCTTAGGAAAAACCAAAATGGGGCTTTCTCCAGCTT  2870

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2871  TTGGGCAGTTTAAATATGTTACTCCAACAGTGTCAAGCACATTGAACTGTCATAGTGGCCCTTTACATTTCTGC  2944

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 2945  TTTTAGAAGGATTGGTGAACTCTGTGAAAATAATATCTTTCCAGTTACTGGGCTTGAAACACTGGTGTGCATTG  3018

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3019  ATTATATTTTACCAAATGTTATAAATTGTCTGGTGTTTTCAGTATGTGAAAATGTTCACAAGAAAGTGAGTTTG  3092

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3093  CAACATGTAGAGGTTGGAAAAACCTATGCAGGGCTAAATTTGCTAGACTTCTGCAGCTAAATTAAAGCAGAGTT  3166

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3167  AAAGTGCTCAGCTTATGAACCAAACAAAAGTATCCTGCTCCTGCCCTCCGGGTTCCTCTCTGCAACTCTTAAAC  3240

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3241  CTTATTCAGAGAAAGTCTCTGTTTCCTTGGGATGAGTACTTTACTGTCACTGGATTGTAACCTTGTCTTCTGTC  3314

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3315  TAGCAGAGAGCTATTTACAAAGTTACATTTTGTAAATGTCTGTTACTACTTTTGAATCTGTGCTATAGCAACCC  3388

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3389  AGAGGGAGCCAGGCGCAGCACCCCAGATCACCAGCTGATGAGTGACAAATGATTCTTTACAATGTAGGATTTCT  3462

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3463  TGACCTGTTGATTGGGTTGCTGTTGGTATATGTGTAAGGATGTTATTCACCTCAGCTTTCTTGGGATAACAACA  3536

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3537  AGCACTTGGCAGTACCCTGCCTACAGGGAGGCCAGGGTTAATATTTCTCATCTGGCCTTCTCCCTATTTTTATT  3610

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3611  CTAGGCACACAGTGGTAGAAAGGTAAGGTGTGAGCTTTTTTAAAAATAAATCTTATACTTAGTTCTTAAAGTAA  3684

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3685  ATAGATGGAAAGAGACATAAATTGGAAATTCAAAATAGTCTGATTCAAGCTTTGGAGCTTTTTCGGGTACCTAA  3758

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3759  CACACAGTCCTTGGAAGTCATCATGGATGTTTGCTAGACCATCTACGTGTAATAATTGTTCTTTTCTCACAATT  3832

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 3833  CTGCCTTGTGCTTCCTGAAATGCATTTTTGTTTGTTTATATGTCAAAAATAATAAAGTGTGGACCTCCTATAAT  3906

Query 1249  -------------------------------------------------------  1248
                                                                   
Sbjct 3907  CTTGTTTACCATTTTAAAATAAAATTTTCCAACAAAGCAAAAAAAAAAAAAAAAA  3961

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