Nucleotide Global Alignment

Description

Query:
TRCN0000479117
Subject:
XR_001780804.1
Aligned Length:
1482
Identities:
1048
Gaps:
306

Alignment

Query    1  ---------ATGTCT--ATTTCCT-----------TGAGCTCTTTAATTTTGT-----TGCCAAT-TTG---GA  43
                     |.||.|  |||.|||           .|.||..|..||.||.||     .||..|| |||   ||
Sbjct    1  TGCGTAATGACGTTTAAATTCCCTGCAGACCCGGAAGTGCAATCGAACTTGGTCGGGGCGCGGATCTTGAGAGA  74

Query   44  TAAA--------CATGGCACAAATCCAGCAGGGAG---GTCCAGA----TGAAAAAGAA----AAGACT-----  93
            .|||        ||.|||.||        ||||||   |.|||||    ||     |||    |.|.||     
Sbjct   75  GAAAGTCCGAGCCAGGGCGCA--------AGGGAGTTCGCCCAGAGATCTG-----GAAGGCCACGCCTCCTCG  135

Query   94  -ACC----------GCACTGAA----------------AGATTTATTATCTAGGATAGATTTGGATGAACTAAT  140
             |||          |||.||.|                ||||||..|.||||||||.||||||||||||||.||
Sbjct  136  CACCTACCCTCTCAGCATTGCAGCTGGGGACAGAGCTCAGATTTGCTGTCTAGGATCGATTTGGATGAACTCAT  209

Query  141  GAAAAAAGATGAACCGCCTCTTGATTTTCCTGATACCCTGGAAGGATTTGAATATGCTTTTAATGAAAAGGGAC  214
            ||||||.||.|||||.|||.||||||||||.|||||.||||||||.||||||||||||||||||||||||||.|
Sbjct  210  GAAAAAGGACGAACCACCTTTTGATTTTCCAGATACACTGGAAGGCTTTGAATATGCTTTTAATGAAAAGGGGC  283

Query  215  AGTTAAGACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGGGAAGATTTACACAGATGGAACCAGAAA  288
            ||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||.||||||||||||
Sbjct  284  AGTTAAGACACATAAAAACTGGGGAACCATTTGTTTTTAACTACCGAGAAGACTTACACAGGTGGAACCAGAAA  357

Query  289  AGATACGAGGCTCTAGGAGAGATCATCACGAAG-TATGTATATGAGCTCCTGGAAAAGGATTGTAATTTGAAAA  361
            |||||.||.|||||.||.||||||||||| ||| |||||.||||||||||||||||..||.|||||||||||||
Sbjct  358  AGATATGAAGCTCTGGGCGAGATCATCAC-AAGATATGTTTATGAGCTCCTGGAAAGTGACTGTAATTTGAAAA  430

Query  362  AAGTATCTATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACA  435
            ||.|.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  431  AAATCTCTATTCCAGTAGATGCCACTGAGAGTGAACCAAAGAGTTTTATCTTTATGAGTGAGGATGCTTTGACA  504

Query  436  AATCCACAGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGGCAGTGGGCTAGAAGACTTAT  509
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||
Sbjct  505  AATCCACAGAAACTGATGGTTTTAATTCATGGTAGTGGTGTTGTCAGGGCAGGTCAGTGGGCTAGAAGGCTTAT  578

Query  510  TATAAATGAAGATCTGGACAGTGGCACACAGATACCGTTTATTAAAAGAGCTGTGGCTGAAGGATATGGAGTAA  583
            |||.||||||||||||||||||||||||||||||||.||||||||.||||||.|||.||||||.||||||||.|
Sbjct  579  TATTAATGAAGATCTGGACAGTGGCACACAGATACCTTTTATTAAGAGAGCTATGGATGAAGGGTATGGAGTCA  652

Query  584  TAGTACTAAATCCCAATGAAAACTATATTGAAGTAGAAAAGCCGAAGATACACGTACAGTCATCA---TCTGAT  654
            |.||.||.||.||.||||||||||||||.|||||.|||||||.|||.||.||...||||||||||   ||||||
Sbjct  653  TCGTCCTGAACCCAAATGAAAACTATATAGAAGTGGAAAAGCAGAAAATGCATAAACAGTCATCATCTTCTGAT  726

Query  655  AGTTCAGATGAACCAGCAGAAAAACGGGAAAGAAAAGATAAAGTTTCTAAAGAAACAAAGAAGCGACGTGATTT  728
            .||.|||||||.|||||||..||.||||||||.|.||||||.||.||.||.||||||||||||||.||||||||
Sbjct  727  GGTACAGATGAGCCAGCAGGGAAGCGGGAAAGGAGAGATAAGGTCTCCAAGGAAACAAAGAAGCGTCGTGATTT  800

Query  729  CTATGAGAAGTATCGTAACCCCCAAAGAGAAAAAGAAATGATGCAATTGTATATCAGAGAAAATGGTTCTCCTG  802
            ||||||||||||.||.|||||.||||..||.||||||||||||||.||||.||||||.||||||||||||||||
Sbjct  801  CTATGAGAAGTACCGCAACCCTCAAAAGGAGAAAGAAATGATGCAGTTGTTTATCAGGGAAAATGGTTCTCCTG  874

Query  803  AAGAACATGCAATCTATGTTTGGGATCATTTCATAGCTCAGGCTGCTGCTGAGAATGTGTTTTTCGTTGCTCAC  876
            ||||.|||||..|||||||.|||||.|||||||||||.|||||||||||||||||||||||.||.||.|||||.
Sbjct  875  AAGAGCATGCGGTCTATGTGTGGGACCATTTCATAGCCCAGGCTGCTGCTGAGAATGTGTTCTTTGTGGCTCAT  948

Query  877  AGCTATGGAGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCCGATGTAAAAAATAAGGTAACTGCTGT  950
            |||||||||||||||||||||||||||||||||||||||||||||||.||||||||||.||||||.||||||||
Sbjct  949  AGCTATGGAGGACTTGCTTTTGTTGAACTGATGATTCAACGAGAAGCAGATGTAAAAAGTAAGGTGACTGCTGT  1022

Query  951  GGCATTGACAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACGATTCGAGAATGGATGAGAGAGA  1024
            |||||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||||||||||
Sbjct 1023  GGCATTGACAGACTCTGTTCACAATGTGTGGCATCAAGAAGCTGGCAAAACCATCCGAGAATGGATGAGAGAGA  1096

Query 1025  ACTGTTGTAATTGGGTCTCTAGCTCAGAACCATTAGACACATCAGTGGAGTCCATGCTACCTGATTGCCCCCGG  1098
            ||||||||||.||||||||.|||||||||||||||||.|||||.|||||.||||||||.|||||.||.|||.|.
Sbjct 1097  ACTGTTGTAACTGGGTCTCCAGCTCAGAACCATTAGATACATCGGTGGAATCCATGCTGCCTGACTGTCCCAGA  1170

Query 1099  GTCTCAGC------------------------------------------------------------------  1106
            ||.||.||                                                                  
Sbjct 1171  GTGTCTGCAGGACGGATTCTTATCATCAAAGTGGGCAATGTCTGCCATACACCATTTTTGTGTAGTAACTGTAT  1244

Query 1107  --------------------------------------------------------------------------  1106
                                                                                      
Sbjct 1245  TCTGAATACATTCTGGATGAAAGAGCATCCATAAGCCTGCATGTATGAGAAACAAGGCTGGAAGACTTTAAGGA  1318

Query 1107  --------AGGCACCGACCGTCACGAGCTAACTTCCTGGAAGAGCTTTCCGTCTATTTTCAAATTCTTTACCGA  1172
                    |||||||||||||||||||||.|||||||||||||||||.||||||||.|||||.|||||..|.||
Sbjct 1319  TCCCACCTAGGCACCGACCGTCACGAGCTCACTTCCTGGAAGAGCTTCCCGTCTATCTTCAAGTTCTTCGCGGA  1392

Query 1173  AGCCTCAGAGGCCAAGACCAGCTCCCTGAAGCCGGCTGTGACGCGCCGCTCCCACCGCATCAAGCACGAAGAGC  1246
            ||||||.||||||||||.                                                        
Sbjct 1393  AGCCTCGGAGGCCAAGAG--------------------------------------------------------  1410

Query 1247  TG  1248
              
Sbjct 1411  --  1410

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