Nucleotide Global Alignment
Description
- Query:
- TRCN0000479180
- Subject:
- XR_001751289.1
- Aligned Length:
- 1969
- Identities:
- 764
- Gaps:
- 1133
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAAATAGCCCCGGTGTGGGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGGCTGAAAGAGGCGGCTCCGGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGCGAAGCGCTGGTGGCGGGCCCGGGCTGCGGCGTGTGCGCGCCCGCCAGCTGCTCCGGAGATACGGAATTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CATTTTGTGAAAAAAGAACAAGAATTTTCTGCAAGGATCATATCTAAGTGCACTTTTTGCTGATACTTCATTTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAATCTTGTAGAAAATTTCAGCTGTAGCCCTTGGACTAGAAGCTGAAATAACAGAAGCTGTGTACGATGCATTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGGTATTGAAGAAAATTAACTTTTGAATTAAATATTTGGAATATAAGGAAATAAGGAAAGTTGACTGAAAATGG 370
Query 1 -----------------------------ATGGATGAAAGGAACCGACAG---ACTTT----AAGA-------- 30
||||||||||||||||||||| ||||| ||||
Sbjct 371 GGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGTCACTTTTACAAAGAGAAAGTTT 444
Query 31 ---------AAGAAAGGC------CTTAATG------GT---TGTGA--------------------------- 53
|||||||.| ||||.|| || |||||
Sbjct 445 GGATTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTGTGAAATAGCACTCATCATTTTCAACAGCTC 518
Query 54 ---------------------GAGCCCTGATGCTGACGA--TTACTT--------------------TG----- 79
.|||.|||||...|||.| || ||| ||
Sbjct 519 TAACAAACTGTTTCAATATGCTAGCACTGATATGGACAAAGTT-CTTCTCAAGTATACAGAATATAATGAACCT 591
Query 80 ------AGCACAGTCCACT---------------CTC----------GGAGGACAGA----------------- 105
||||.|..|.||| ||| |||..|||||
Sbjct 592 CATGAAAGCAGAACCAACTCGGATATTGTTGAGGCTCTGAACAAGAAGGAACACAGAGGGTGCGACAGCCCAGA 665
Query 106 ---------TTCA-----GCAAACT--AAAT---GAAGA---------------TAGTG----ATTTTATTTTC 141
|||| ||.|||| |.|| ||||| ||.|| ||||.||
Sbjct 666 CCCTGATACTTCATATGTGCTAACTCCACATACAGAAGAAAAATATAAAAAAATTAATGAGGAATTTGAT---- 735
Query 142 AA-ACGAGGC-----CCT---------------------CCTGGTCTGCCACCTCAGAACTTTTCAATGTCTGT 188
|| |.||.|| |.| |||||||||||||||||||||||||||||||||||
Sbjct 736 AATATGATGCGGAATCATAAAATCGCAGTGAGTACTAAACCTGGTCTGCCACCTCAGAACTTTTCAATGTCTGT 809
Query 189 CACAGTTCCAGTGACCAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCCCATCTTTGG 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 CACAGTTCCAGTGACCAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCCCATCTTTGG 883
Query 263 CAGCCAGCTCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAGAAATGTGTCTCCT 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 CAGCCAGCTCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAGAAATGTGTCTCCT 957
Query 337 GGAGCTCCTCAGAGACCACCAAGTACTGGCAATGCAGGTGGGATGTTGAGCACTACAGACCTCACAGTGCCAAA 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GGAGCTCCTCAGAGACCACCAAGTACTGGCAATGCAGGTGGGATGTTGAGCACTACAGACCTCACAGTGCCAAA 1031
Query 411 TGGAGCTGGAAGCAGTCCAGTGGGGAATGGATTTGTAAACTCAAGAGCTTCTCCAAATTTGATTGGAGCTACTG 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 TGGAGCTGGAAGCAGTCCAGTGGGGAATGGATTTGTAAACTCAAGAGCTTCTCCAAATTTGATTGGAGCTACTG 1105
Query 485 GTGCAAATAGCTTAGGCAAAGTCATGCCTACAAAGTCTCCCCCTCCACCAGGTGGTGGTAATCTTGGAATGAAC 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 GTGCAAATAGCTTAGGCAAAGTCATGCCTACAAAGTCTCCCCCTCCACCAGGTGGTGGTAATCTTGGAATGAAC 1179
Query 559 AGTAGGAAACCAGATCTTCGAGTTGTCATCCCCCCTTCAAGCAAGGGCATGATGCCTCCACTAAACACCCAA-- 630
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |.|.||||
Sbjct 1180 AGTAGGAAACCAGATCTTCGAGTTGTCATCCCCCCTTCAAGCAAGGGCATGATGCCTCCACT--AGATCCAATC 1251
Query 631 -AGGAT----CAGTAGTTCTCAAGCCACTCA-ACCTCTTGCTACCCCAGTCGTGTCTGTGACAACCCCAAGCTT 698
||||| ||.|| |.|..|| ||.||| ..||||| ||.||...||.||.|||||| .||.||
Sbjct 1252 CAGGATACCACATTA--TATTTAG-CAATCATGTCTCTT--TAGCCTCCTCTTGACTGTGA-------GAGTTT 1313
Query 699 GCCTCCGCAAGGACTTGTGTACTCAGCAATGCCGACTGCCTACAACACTGATTATTCACTGACCAGCGCTGAC- 771
|.|.||||| |.|| ||| ||.|.||||| .||||
Sbjct 1314 -------CTAAGACTT---TCCT------TGC----------------------TTTAATGACC----TTGACA 1345
Query 772 -------------CT-GTCAGCCCT----TCAAGGC--TTCAACTCGCCAGGAA-------------------- 805
|| |||||.||| || |||| || ||| |.|||||
Sbjct 1346 GTTTTGAGGAGTACTAGTCAGTCCTAGAATC-AGGCATTT---CTC-CAAGGAACATTATTTTTATGGAGAATG 1414
Query 806 -------------------TGCTGTC-------------GCTGGGACAGGTGTCGGCCT------GGCAGCAGC 841
||||.|| |||...|.||||.||.|.|| ||||..|..
Sbjct 1415 AAAGAAACCAAGATCCGAGTGCTTTCCCTCTTTTTAATTGCTCCAAAAGGTATCTGACTATGTAAGGCAAAAAT 1488
Query 842 ACCACCTAGGACAAGCAGCCCTCAGCTCTCTTGTTGCTGGAGGGCAGTTATCTCAGGGTTCCAATTTATCCAT- 914
|..|.|| .|.|.|||||.|||.| ||| |||
Sbjct 1489 AGTAACT------------------GTATTTTGTTTCTGTA--GCA------------------------CATG 1518
Query 915 TAATACCAACCAAAACATCAG-CATCAAGTCCGAACCGATTTCACCTCCTCGGGATCGTATGACCCCATCGGGC 987
||| ||..||||.||..| ||.||| || ||| ||||
Sbjct 1519 TAA----AAATAAAATATATGACAACAA-----AA--GAT-----------GGGA------------------- 1551
Query 988 TTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCGCAGCCCCAGCCACAACCCCCGCA 1061
Sbjct 1552 -------------------------------------------------------------------------- 1551
Query 1062 GCCCCAGCCCCGACAGGAAATGGGGCGCTCCCCTGTGGACAGTCTGAGCAGCTCTAGTAGCTCCTATGATGGCA 1135
Sbjct 1552 -------------------------------------------------------------------------- 1551
Query 1136 GTGATCGGGAGGATCCACGGGGCGACTTCCATTCTCCAATTGTGCTTGGCCGACCCCCAAACACTGAGGACAGA 1209
Sbjct 1552 -------------------------------------------------------------------------- 1551
Query 1210 GAAAGCCCTTCTGTAAAGCGAATGAGGATGGACGCGTGGGTGACC 1254
Sbjct 1552 --------------------------------------------- 1551
