Nucleotide Global Alignment

Description

• Query: TRCN0000479282
• Subject: XM_006530259.3
• Aligned Length: 2205
• Identities: 1511
• Gaps: 357

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCGTAGCTCTGAGGGCGCGCCGTCCTGGGCTGTGGCTTTGCCCCCGCCGCTGCGGCCGTGCGCCTATGGCGT  74

Query    1  -------------------------------------------------------ATGAACCCTCCGGCAGCCT  19
                                                                   |||||||||.||||..|||
Sbjct   75  CTCGGAGGTGACCCGCTGCTGGCACCAACTCTCTCTGGGGGCGGGGGAGTCATCCATGAACCCTTCGGCGACCT  148

Query   20  T---CCTTGCCGGGCGCCAGAACATCGGGTCAGAAGTTGAGATTTCCACTATCGAGAAACAACGGAAGGAGCTG  90
            |   ||      ||||||||||||||||.|||||||||||||.|||||||||.|||||.||.||||||||.||.
Sbjct  149  TATACC------GGCGCCAGAACATCGGATCAGAAGTTGAGACTTCCACTATTGAGAAGCAGCGGAAGGAACTT  216

Query   91  CAGTTGCTCATTGGAGAATTAAAAGATCGAGATAAAGAGCTCAATGACATGGTTGCAGTGCACCAGCAACAGCT  164
            |||.|||||||.||.||..|.|||||.||.|||||.|||||||||||||||||.||||||||.|||...|||||
Sbjct  217  CAGCTGCTCATCGGGGAGCTGAAAGACCGCGATAAGGAGCTCAATGACATGGTCGCAGTGCATCAGAGGCAGCT  290

Query  165  TCTTTCATGGGAAGAGGATCGGCAGAAAGTGTTGACACTGGAAGAACGTTGCAGCAAATTAGAAGGTGAACTAC  238
            |||.||.|||||||||||.||||||||||||.||||.|||||.||.||.||||||||..|.||||||||.||.|
Sbjct  291  TCTCTCCTGGGAAGAGGACCGGCAGAAAGTGCTGACCCTGGAGGAGCGCTGCAGCAAGCTCGAAGGTGAGCTGC  364

Query  239  ATAAAAGAACTGAAATAATCAGGTAGACT--CCAAGAAGGTAAAAGCTCTTGAATCACAATCAAATGGAATGCC  310
            |||||||.|||||.|||||||.|| .|||  ..||||||||.||..|.||.||.|| |||||||...||.||||
Sbjct  365  ATAAAAGGACTGACATAATCAAGT-CACTGATGAAGAAGGTCAAGACCCTGGAGTC-CAATCAAGCAGAGTGCC  436

Query  311  AAACAGCTCTCCAAAAGACCCAACTACAGCTTCAGGAAATGGCTCAAAAGGCAACGCATTCTTCTCTTCTCTCT  384
            |.||||||||.||.|||||.||.|..|||||.|||||.||||||||.|||||.||.||.||..|.||.|||||.
Sbjct  437  AGACAGCTCTTCAGAAGACGCAGCAGCAGCTCCAGGAGATGGCTCAGAAGGCCACACACTCCACCCTCCTCTCG  510

Query  385  GAAGACCTTGAGGCTAGAAACGAAACTCTCAGCAACACGTTAGTGGAACTTTCTGCCCAGGTAGGACAGCTACA  458
            ||||||||||                                                                
Sbjct  511  GAAGACCTTG----------------------------------------------------------------  520

Query  459  AGCTCGAGAACAAGCTCTTACGACAATGATAAAGCTAAAGGACAAAGATATTATTGAGGCAGTTAATCACATTG  532
                                                  ||||||||||.|||||||||||.||.|||||||||.
Sbjct  521  --------------------------------------AGGACAAAGACATTATTGAGGCCGTCAATCACATTT  556

Query  533  CAGATTGTTCGGGTAAATTTAAAATGCTAGAGCATGCCCTACGTGATGCCAAGATGGCGGAGACTTGTATTGTG  606
            ||||.||.|||||||||||||||.||.|||||||.||..|||||||||||||||||||||||||.|||.|.|||
Sbjct  557  CAGACTGCTCGGGTAAATTTAAATTGTTAGAGCACGCTTTACGTGATGCCAAGATGGCGGAGACGTGTGTGGTG  630

Query  607  AAAGAAAAGCAAGATTATAAGCAGAAATTGAAGGCACTTAAGATTGAAGTCAACAAACTAAAAGAGGACCTCAA  680
            |.||||||||||||||||||||||||||||||||||||||.||||||||||||.|||||.||||||||.||.||
Sbjct  631  AGAGAAAAGCAAGATTATAAGCAGAAATTGAAGGCACTTAGGATTGAAGTCAATAAACTGAAAGAGGATCTAAA  704

Query  681  TGAAAAGACGACAGAAAATAATGAGCAACGAGAAGAGATCATTCGCCTCAAGCAAGAGAAAAGTTGCCTGCACG  754
            |||.|||||.||||||||.|||||.||||||||.|||||.|||||.|||||||||||||||||.||.||.||.|
Sbjct  705  TGAGAAGACAACAGAAAACAATGAACAACGAGAGGAGATAATTCGACTCAAGCAAGAGAAAAGCTGTCTACATG  778

Query  755  ATGAATTGCTTTTTACTGTAGAGAGAGAAAAGAGGAAAGATGAATTGCTTAATATTGCGAAGTCAAAGCAAGAA  828
            ||||..|..||||||||||.|||||.||||||||||||||||||||.|||.|||||||.||||||||||||||.
Sbjct  779  ATGAGCTAATTTTTACTGTTGAGAGGGAAAAGAGGAAAGATGAATTACTTGATATTGCAAAGTCAAAGCAAGAT  852

Query  829  CGCACAAATTCAGAACTGCACAATCTGAGACAGATTTATGTAAAACAACAGAGTGATCTGCAGTTTCTTAATTT  902
            ||.||||||||.||.||.||.||||||||||||||||||||||||||.||||||||.|||||||||||||||||
Sbjct  853  CGTACAAATTCCGAGCTCCAGAATCTGAGACAGATTTATGTAAAACAGCAGAGTGACCTGCAGTTTCTTAATTT  926

Query  903  CAATGTGGAAAATTCTCAGGAATTAATACAGATGTATGACTCAAAGATGGAGGAATCAAAGGCTCTGGACTCCA  976
            ||||.|.||||.||||||||||||||||||.||..|||.||.|||||||||||||.|||||||.|||||.|.||
Sbjct  927  CAATATAGAAAGTTCTCAGGAATTAATACAAATACATGGCTTAAAGATGGAGGAACCAAAGGCCCTGGAGTGCA  1000

Query  977  GCAGAGACATGTGTTTATCAGACCTTGAAAATAACCACCCAAAAGTCGATATTAAGAGGGAAAAAAATCAGAAG  1050
            |||..|||||||||||||||||||||||.||||||.||||||||.||||||||||.||.||.|.||||||||||
Sbjct 1001  GCAAGGACATGTGTTTATCAGACCTTGACAATAACTACCCAAAAATCGATATTAAAAGAGAGAGAAATCAGAAG  1074

Query 1051  TCACTGTTTAAGGACCAGAAATTTGAAGCCATGTTGGTTCAGCAAAATAGGTCAGACAAGAGCTCTTGCGATGA  1124
            |||.||.||||.||.||.|..|||||.|.||||||||.||||||.|||.|||||||||||||||||||.||||.
Sbjct 1075  TCATTGGTTAAAGATCAAACGTTTGAGGTCATGTTGGCTCAGCACAATGGGTCAGACAAGAGCTCTTGTGATGC  1148

Query 1125  ATGCAAAGAGAAGAAACAACAGATCGATACTGTGTTTGGGGAGAAAAGTGTAATTAAGCTGTCATCCATATTCA  1198
            .||||.|||||||||.|.||||.|..|.||||...|.|||||.||||||||||||...||.|||||..||||.|
Sbjct 1149  TTGCAGAGAGAAGAAGCTACAGGTTAACACTGCACTCGGGGAAAAAAGTGTAATTGCTCTCTCATCTCTATTTA  1222

Query 1199  CCAAAGACTTAGTAGAGAAACACAACCTCCCTTGGTCTCTGGGAGGAAAAACCCAGATTGAACCCGAAAACAAA  1272
            |||||||||||.|.||.|||||.||   ..|||||||||||||.||.||||.|||||.||||||.|||||||||
Sbjct 1223  CCAAAGACTTACTGGACAAACAAAA---GTCTTGGTCTCTGGGTGGGAAAATCCAGACTGAACCGGAAAACAAA  1293

Query 1273  ATTACATTGTGCAAGATCCACACAAAATCACCAAAATGTCATGGCACTGGGG-TTCAGAAC-GAAGGAAAACAA  1344
            .||||..|.||||||.||||..||||.|||||||||||..|||| |.||||| ||| .||| ||||..||.||.
Sbjct 1294  GTTACCCTATGCAAGGTCCATGCAAAGTCACCAAAATGCGATGG-AGTGGGGCTTC-CAACGGAAGAGAAGCAG  1365

Query 1345  CCCTCAGAAACACC---CACTTTATCTGATGAGAAGCAGTGGCATGATGTCAGTGTTTACCTGGGCCTGACCAA  1415
            |.|||.|||||..|   |.|..|.|||||.|||||||||||||||||..|||..||.|||||||||||..|||.
Sbjct 1366  CTCTCGGAAACCTCCGTCTCGCTGTCTGACGAGAAGCAGTGGCATGACATCAACGTCTACCTGGGCCTTTCCAG  1439

Query 1416  CTGTCCAAGTTCAAAACATCCAGAAAAGCTGGATGTAGAATGTCAAGATCAGATGGAAAGG----TCCGAAATC  1485
            ||      |.||||||||.|||||.|.||||||.|..||..|.||.||.|    |.|.|||    ||.||..||
Sbjct 1440  CT------GCTCAAAACAGCCAGACAGGCTGGACGGGGATGGCCACGACC----GCACAGGAACATCTGAGGTC  1503

Query 1486  TCATGCTGCCAGAA----AAATGAAGCCTGTCTGGGCGAAAGTGGCATGTGTGACTCCAAGTGCTGCCACCCGA  1555
            ||.||||||    |    |||||.||.||||.|.||.||.|.||.|.|||..||.|||||||||||||||||.|
Sbjct 1504  TCCTGCTGC----ACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGCTGCCACCCAA  1573

Query 1556  GTAACTTCATAATTGAAGCCCCAGGCCACATGTCTGACGTGGAGTGGATGAGTATTTTCAAGCCTTCCAAAATG  1629
            |||||.||||.||.|||||||||||.||.|||.||||....||||||||||.|||||||||||||||||.|...
Sbjct 1574  GTAACATCATCATCGAAGCCCCAGGACATATGACTGATACAGAGTGGATGAATATTTTCAAGCCTTCCAGAGCA  1647

Query 1630  CAGAGAATTGTCCGCCTCAAATCTGGGTGCACCTGTTCAGAAAGCATCTGT-GGCACA---CAACATGACTCCC  1699
            ||.||.|||||.||||.||||.|...||||||.||||||..|||    ||| .||.||   .||.||.|.|||.
Sbjct 1648  CAAAGGATTGTTCGCCACAAAACCATGTGCACTTGTTCAAGAAG----TGTCAGCGCAATGAAATATAATTCCT  1717

Query 1700  CGGCAAGTGAGCTAATTGCCATCCAAGATTCCCACTCTTTGGGTTCTTCAAAATCTGCCTTG--AGAGAAGATG  1771
            |.|||||||||||.||||.|||.||...||||||.|.|.|||||||.|.|||.|||||  ||  ||||||||.|
Sbjct 1718  CAGCAAGTGAGCTCATTGGCATGCAGCCTTCCCAGTGTGTGGGTTCCTTAAAGTCTGC--TGAAAGAGAAGAGG  1789

Query 1772  AGACGGAGTCCTCTTCCAATAAAAAGAACTCACCTACGAGTTTGTTAATCTACAAAGATGCACCAGCATTCAAT  1845
            ||.|.|.|.|| |||||....|.||||    ||||                            ||||   ||||
Sbjct 1790  AGTCAGCGGCC-CTTCCTGACAGAAGA----ACCT----------------------------CAGC---CAAT  1827

Query 1846  GAAAAGGCTTCAATTGTGTTACCCTCCCAGGATGATTTCTCGCCCACGAGCAAGCTCCAGCGTTTGCTGGCGGA  1919
            ||||                        |||||||.|||||.||.|||||.|||||||||||..|||||||.||
Sbjct 1828  GAAA------------------------AGGATGACTTCTCTCCTACGAGTAAGCTCCAGCGGCTGCTGGCCGA  1877

Query 1920  ATCTCGTCAGATGGTGACGGACCTGGAGCTGAGCACACTGCTGCCCATCAGCCATGAGAATCTCACTGGCAGTG  1993
            .||.||.||||||||.|||||.||||||||||||||.|||||.|||||||||...||||||||||         
Sbjct 1878  GTCCCGGCAGATGGTCACGGATCTGGAGCTGAGCACGCTGCTACCCATCAGCTGCGAGAATCTCA---------  1942

Query 1994  CCACAAATAAGTCAGAGGTCCCAGAAGAGTCAGCTCAAAAAAATACCTTTGTCAGTTAT  2052
            .||.||..||.|.|||.|||.||||||||.|||.|.||||||..|||.||||||||.||
Sbjct 1943  ACAGAAGCAAATTAGAAGTCTCAGAAGAGCCAGATGAAAAAACCACCCTTGTCAGTCAT  2001