Nucleotide Global Alignment

Description

Query:
TRCN0000479702
Subject:
XR_002958615.1
Aligned Length:
2318
Identities:
938
Gaps:
1379

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTATGATGCTCTGAGTTCAATACGTCTGAACCTTTGCTGTCTATGGATCTGCTCTAAACCTTATAGCCTGCTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGGGGGAAGTTCCCAGGTCCCCCTTCAGTGAGGTCTTCCTGATGGATGCTGATATGGTCTGGCTGTGTCCCCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCCAAATCTCATCTTGAATTGTAGCTCCCACAATTCCTACAGGTCATGGGAGGGACTCAGTGGGAGCATCTCAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTTGTCTAAACGGGGAGAGTGGCCATCTGTCCGATACCCACATCAAACCTGATCGTTCCCAGCCTCACAGAGCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCTTTGTTCCAAGGTGACGCCTTCTGGGCCCCATCTGTCCTTCCTCACAGCACCCTCAGCACCTTAAGCCACCA  370

Query    1  -------------------------ATGGAGTCCAAGGTCTCAGAAGGTGGCCTGAATGTGACCCTCACCATCC  49
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCCTCAGCCACAATTTGGCAGAAGGATGGAGTCCAAGGTCTCAGAAGGTGGCCTGAATGTGACCCTCACCATCC  444

Query   50  GCCTGCTGATGCATGGAAAGGAAGTTGGAAGCATCATCGGGAAGAAAGGAGAAACTGTGAAGAAGATGCGTGAG  123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCCTGCTGATGCATGGAAAGGAAGTTGGAAGCATCATCGGGAAGAAAGGAGAAACTGTGAAGAAGATGCGTGAG  518

Query  124  GAGAGTGGTGCAAGGATCAACATCTCAGAGGGAAACTGCCCAGAGAGGATTGTGACCATCACAGGCCCCACAGA  197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAGAGTGGTGCAAGGATCAACATCTCAGAGGGAAACTGCCCAGAGAGGATTGTGACCATCACAGGCCCCACAGA  592

Query  198  CGCCATCTTCAAGGCCTTTGCCATGATCGCATACAAGTTTGAGGAGGATATCATCAACTCCATGAGCAACAGCC  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CGCCATCTTCAAGGCCTTTGCCATGATCGCATACAAGTTTGAGGAGGATATCATCAACTCCATGAGCAACAGCC  666

Query  272  CTGCCACCAGCAAGCCCCCAGTGACGCTGAGGCTGGTGGTGCCTGCCAGCCAGTGCGGGTCCCTGATCGGCAAA  345
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  667  CTGCCACCAGCAAGCCCCCAGTGACGCTGAGGCTGGTGGTGCCTGCCAGCCAGTGTGGGTCCCTGATCGGCAAA  740

Query  346  GGAGGCTCCAAGATCAAGGAGATCAGGGAGTCCACAGGTGCCCAGGTGCAGGTGGCTGGGGACATGCTGCCCAA  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGAGGCTCCAAGATCAAGGAGATCAGGGAGTCCACAGGTGCCCAGGTGCAGGTGGCTGGGGACATGCTGCCCAA  814

Query  420  CTCCACGGAGCGAGCGGTGACCATCTCGGGGACCCCAGATGCCATCATCCAGTGCGTCAAGCAGATCTGTGTGG  493
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTCCACGGAGCGAGCGGTGACCATCTCGGGGACCCCAGATGCCATCATCCAGTGCGTCAAGCAGATCTGTGTGG  888

Query  494  TCATGCTGGA----------------------------------------------------------------  503
            ||||||||||                                                                
Sbjct  889  TCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCTGTCATTTTT  962

Query  504  --------------------------------------------------------------------------  503
                                                                                      
Sbjct  963  GCAGGTGGTCAGGTAAGAGCCGATCCGCTCGCGGCCTCCACTGCCAACCTCAGCCTTTTACTGCAGCACCCGCC  1036

Query  504  --------------------------------------------------------------------------  503
                                                                                      
Sbjct 1037  GCTGCCCAAACTTGGAGTCGGAAGCATCAAGGCTGAACTGTTTCCCTCCCACCCGCTGAACTGGCCAGCTCAGC  1110

Query  504  ---------------------GGCCTACACAATCCAGGGACAGTATGCCATCCCTCACCCGGATTTGACCAAGC  556
                                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TCTGCCCGCCCAGAGGAAGTGGGCCTACACAATCCAGGGACAGTATGCCATCCCTCACCCGGATTTGACCAAGC  1184

Query  557  TCCACCAGTTGGCCATGCAGCAAACCCCCTTTCCTCCCCTCGGACAGACCAACCCCGCTTTCCCCGGAGAAAAG  630
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TCCACCAGTTGGCCATGCAGCAAACCCCCTTTCCTCCCCTCGGACAGACCAACCCCGCTTTCCCCGGAGAAAAG  1258

Query  631  CTGCCTTTACACTCCTCCGAAGAAGCTCAAAATCTGATGGGCCAGTCATCAGGTCTGGACGCCAGCCCACCGGC  704
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CTGCCTTTACACTCCTCCGAAGAAGCTCAAAATCTGATGGGCCAGTCATCAGGTCTGGACGCCAGCCCACCGGC  1332

Query  705  CAGCACTCATGAGCTCACCATTCCCAATGATCTAATAGGCTGCATAATTGGACGCCAAGGGACCAAAATCAATG  778
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CAGCACTCATGAGCTCACCATTCCCAATGATCTAATAGGCTGCATAATTGGACGCCAAGGGACCAAAATCAATG  1406

Query  779  AAATTCGACAGATGTCTGGAGCTCAGATCAAAATCGCCAACGCCACGGAAGGGTCCTCAGAGCGTCAGATCACC  852
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AAATTCGACAGATGTCTGGAGCTCAGATCAAAATCGCCAACGCCACGGAAGGGTCCTCAGAGCGTCAGATCACC  1480

Query  853  ATCACGGGGACCCCGGCCAACATCAGCCTTGCCCAGTATCTCATCAACGCCAGGCTGACGTCCGAGGTCACCGG  926
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ATCACGGGGACCCCGGCCAACATCAGCCTTGCCCAGTATCTCATCAACGCCAGGCTGACGTCCGAGGTCACCGG  1554

Query  927  GATGGGCACGCTG-------------------------------------------------------------  939
            |||||||||||||                                                             
Sbjct 1555  GATGGGCACGCTGTAATCCTACCCAGCACCCTTCCCCCGCGTCACCCACCTGCCAGAGCCTAAGGCCCCCGGCT  1628

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1629  CTCGCACTCTGTACAGCCCACCTTCCCTGCCTCACAGATACCAATAGAGAGGTTTTCTTAATTAACAAAAGGAC  1702

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1703  GTATGCCATGGAGAAACACACCCGCGCACACAGCTGCTCTCTACAGAGGCTGCAGGCTCCGCCGAGTCCCCCCT  1776

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1777  CAGTGTTATTTTATTTATGACTTACGCTCCCGTCTGCCCATGCACCGGCATGCAGTGGTAATTATTTTAGAAAT  1850

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1851  ATTGTTCCTTGGTGTCAGCGTAGCTGTCTGTCTTAGGAGCTGGGTCGGCGTTCCGACAGCACTTCCTGTCCGCC  1924

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1925  CTTCTCCTCTGCCATCCAGAACCGTCCAGAACTGTTGCCTGAGACCCCTCCTCTCTCACACAGCCCTGCCATGC  1998

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 1999  TGACTCGGTTTCCCCTCAGAGCCATTGTTGTCTGGGCTCGAGTTTCTGCCCCAGGTTGTGTGCTGGAATCGGGG  2072

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 2073  GGTGGCTCTCCTGCCACCCATGGGGAGCGCCAGGAGAGGAGGGTCATGGAGGATGTTGGGGCTCTGACCCCAGG  2146

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 2147  AGTGGGGTGGAGGGCGGAGCCTGCTGGGGGCCCTGCCTTCACAGAGATGCCGCGTGCTGGGAAGGCTCTTGGGG  2220

Query  940  --------------------------------------------------------------------------  939
                                                                                      
Sbjct 2221  TCCCCTGAGCGTCTTCCAGGGTGGCTGGAGAGCACAGACGCGCCAGGGAGCCCCCTCTGTGCTCCTCAGAGTTC  2294

Query  940  ------------------------  939
                                    
Sbjct 2295  AATAAATGTCGTGGCCCCTCCTCA  2318

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.