Nucleotide Global Alignment

Description

Query:
TRCN0000479864
Subject:
XM_011243708.1
Aligned Length:
1614
Identities:
1266
Gaps:
192

Alignment

Query    1  ATGGATGCTGATGAGGGTCAAGACATGTCCCAAGTTTCAGGGAAGGAAAGCCCCCCTGTAAGCGATACTCCAGA  74
            |||||||..||||||||||||||||||||||||||||||||.|||||.||||||||.||.||.||.||||||||
Sbjct    1  ATGGATGTCGATGAGGGTCAAGACATGTCCCAAGTTTCAGGAAAGGAGAGCCCCCCAGTCAGTGACACTCCAGA  74

Query   75  TGAGGGCGATGAGCCCATGCCGATCCCCGAGGACCTCTCCACCACCTCGGGAGGACAGCAAAGCTCCAAGAGTG  148
            |||.||.||||||||||||||..||||.||||||||.|||||.|||||.||||.||||||.|.|||||||||||
Sbjct   75  TGAAGGGGATGAGCCCATGCCTGTCCCTGAGGACCTGTCCACTACCTCTGGAGCACAGCAGAACTCCAAGAGTG  148

Query  149  ACAGAGTCGTGG------------------------------------------------------------CC  162
            |..|||.|.|||                                                            ||
Sbjct  149  ATCGAGGCATGGTTGCATATGGGGCTGATGGCTTTAGGGATTTTCATGCAATAATTCCCAAATCTTTCTCTCCC  222

Query  163  AGTAATGTTAAAGTAGAGACTCAGAGTGATGAAGAGAATGGGCGTGCCTGTGAAATGAATGGGGAAGAATGTGC  236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGTAATGTTAAAGTAGAGACTCAGAGTGATGAAGAGAATGGGCGTGCCTGTGAAATGAATGGGGAAGAATGTGC  296

Query  237  GGAGGATTTACGAATGCTTGATGCCTCGGGAGAGAAAATGAATGGCTCCCACAGGGACCAAGGCAGCTCGGCTT  310
            .|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGAGGATTTACGAATGCTTGATGCCTCGGGAGAGAAAATGAATGGCTCCCACAGGGACCAAGGCAGCTCGGCTT  370

Query  311  TGTCGGGAGTTGGAGGCATTCGACTTCCTAACGGAAAACTAAAGTGTGATATCTGTGGGATCATTTGCATCGGG  384
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  371  TGTCAGGAGTTGGAGGCATTCGACTTCCTAACGGAAAACTAAAGTGTGATATCTGTGGGATCGTTTGCATCGGG  444

Query  385  CCCAATGTGCTCATGGTTCACAAAAGAAGCCACACTGGAGAACGGCCCTTCCAGTGCAATCAGTGCGGGGCCTC  458
            |||||||||||||||||||||||||||||.||.|||||.||||||||.|||||||||||.|||||.||||||||
Sbjct  445  CCCAATGTGCTCATGGTTCACAAAAGAAGTCATACTGGTGAACGGCCTTTCCAGTGCAACCAGTGTGGGGCCTC  518

Query  459  ATTCACCCAGAAGGGCAACCTGCTCCGGCACATCAAGCTGCATTCCGGGGAGAAGCCCTTCAAATGCCACCTCT  532
            .||.||||||||.||||||||.||.|||||||||||||||||.||.||.||||||||||||||||||||.||.|
Sbjct  519  CTTTACCCAGAAAGGCAACCTCCTGCGGCACATCAAGCTGCACTCGGGTGAGAAGCCCTTCAAATGCCATCTTT  592

Query  533  GCAACTACGCCTGCCGCCGGAGGGACGCCCTCACTGGCCACCTGAGGACGCACTCC------------------  588
            |||||||.||||||||||||||||||||||||||.|||||||||||||||||||||                  
Sbjct  593  GCAACTATGCCTGCCGCCGGAGGGACGCCCTCACCGGCCACCTGAGGACGCACTCCGTTGGTAAGCCTCACAAA  666

Query  589  --------------------------------------------------------------------------  588
                                                                                      
Sbjct  667  TGTGGATATTGTGGCCGGAGCTATAAACAGCGAAGCTCTTTAGAGGAGCATAAAGAGCGATGCCACAACTACTT  740

Query  589  -------------------------------GTCATTAAAGAAGAAACTAATCACAGTGAAATGGCAGAAGACC  631
                                           ||||||||.|||||||||||.||||..||.|||||||||||||
Sbjct  741  GGAAAGCATGGGCCTTCCGGGCATGTACCCAGTCATTAAGGAAGAAACTAACCACAACGAGATGGCAGAAGACC  814

Query  632  TGTGCAAGATAGGATCAGAGAGATCTCTCGTGCTGGACAGACTAGCAAGTAACGTCGCCAAACGTAAGAGCTCT  705
            ||||||||||||||.|||||||.||.||.||.||||||||.||.|||||.||.|||||||||||||||||||||
Sbjct  815  TGTGCAAGATAGGAGCAGAGAGGTCCCTTGTCCTGGACAGGCTGGCAAGCAATGTCGCCAAACGTAAGAGCTCT  888

Query  706  ATGCCTCAGAAATTTCTTGGGGACAAGGGCCTGTCCGACACGCCCTACGACAGCAGCGCCAGCTACGAGAAGGA  779
            ||||||||||||||||||||.||||||.|||||||.||||.||||||.||   |||.||||.|||.||||||||
Sbjct  889  ATGCCTCAGAAATTTCTTGGAGACAAGTGCCTGTCAGACATGCCCTATGA---CAGTGCCAACTATGAGAAGGA  959

Query  780  GAACGAAATGATGAAGTCCCACGTGATGGACCAAGCCATCAACAACGCCATCAACTACCTGGGGGCCGAGTCCC  853
            |   ||.|||||||..|||||||||||||||||.|||||||||||.||||||||||||||||||||.|||||||
Sbjct  960  G---GATATGATGACATCCCACGTGATGGACCAGGCCATCAACAATGCCATCAACTACCTGGGGGCTGAGTCCC  1030

Query  854  TGCGCCCGCTGGTGCAGACGCCCCCGGGCGGTTCCGAGGTGGTCCCGGTCATCAGCCCGATGTACCAGCTGCAC  927
            |||||||..||||||||||.|||||.||..|.|||||||||||.||.|||||||||.|.|||||||||||||||
Sbjct 1031  TGCGCCCATTGGTGCAGACACCCCCCGGTAGCTCCGAGGTGGTGCCAGTCATCAGCTCCATGTACCAGCTGCAC  1104

Query  928  AAGCCGCTCGCGGAGGGCACCCCGCGCTCCAACCACTCGGCCCAGGACAGCGCCGTGGAGAACCTGCTGCTGCT  1001
            |||||.|.|.|.||.|||.||||.||.||||||||.||.||.|||||   |||||||||.|||.||||||||||
Sbjct 1105  AAGCCCCCCTCAGATGGCCCCCCACGGTCCAACCATTCAGCACAGGA---CGCCGTGGATAACTTGCTGCTGCT  1175

Query 1002  CTCCAAGGCCAAGTTGGTGCCCTCGGAGCGCGAGGCGTCCCCGAGCAACAGCTGCCAAGACTCCACGGACACCG  1075
            .|||||||||||||..|||.|.||||||||.|||||.|||||||||||||||||||||||||||||.||.||.|
Sbjct 1176  GTCCAAGGCCAAGTCTGTGTCATCGGAGCGAGAGGCCTCCCCGAGCAACAGCTGCCAAGACTCCACAGATACAG  1249

Query 1076  AGAGCAACAACGAGGAGCAGCGCAGCGGTCTCATCTACCTGACCAACCACATCGCCCCGCACGCGCGCAACGGG  1149
            ||||||||...|||||.|||||||||||.||.||||||||.||||||||||||..||||||.||.|||||.|||
Sbjct 1250  AGAGCAACGCGGAGGAACAGCGCAGCGGCCTTATCTACCTAACCAACCACATCAACCCGCATGCACGCAATGGG  1323

Query 1150  CTGTCGCTCAAGGAGGAGCACCGCGCCTACGACCTGCTGCGCGCCGCCTCCGAGAACTCGCAGGACGCGCTCCG  1223
            |||.|.||||||||||||||.|||||||||||..|||||.|.||.|||||.||||||||||||||.||..||||
Sbjct 1324  CTGGCTCTCAAGGAGGAGCAGCGCGCCTACGAGGTGCTGAGGGCGGCCTCAGAGAACTCGCAGGATGCCTTCCG  1397

Query 1224  CGTGGTCAGCACCAGCGGGGAGCAGATGAAGGTGTACAAGTGCGAACACTGCCGGGTGCTCTTCCTGGATCACG  1297
            .|||||||||||.||.||.||||||.||||||||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1398  TGTGGTCAGCACGAGTGGCGAGCAGCTGAAGGTGTACAAGTGCGAACACTGCCGCGTGCTCTTCCTGGATCACG  1471

Query 1298  TCATGTACACCATCCACATGGGCTGCCACGGCTTCCGTGATCCTTTTGAGTGCAACATGTGCGGCTACCACAGC  1371
            |||||||.|||||.||||||||||||||.|||||.||.|||||.||||||||.||||||||.||.||.||||||
Sbjct 1472  TCATGTATACCATTCACATGGGCTGCCATGGCTTTCGGGATCCCTTTGAGTGTAACATGTGTGGTTATCACAGC  1545

Query 1372  CAGGACCGGTACGAGTTCTCGTCGCACATAACGCGAGGGGAGCACCGCTTCCACATGAGC  1431
            ||||||.|||||||||||||.||.||.||.|||||.||||||||.||.|.||||.|||||
Sbjct 1546  CAGGACAGGTACGAGTTCTCATCCCATATCACGCGGGGGGAGCATCGTTACCACCTGAGC  1605

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