Nucleotide Global Alignment
Description
- Query:
- TRCN0000480310
- Subject:
- XM_011241140.2
- Aligned Length:
- 2759
- Identities:
- 1429
- Gaps:
- 1195
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCGGGTGACGCCGTTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCTGCGCCGGGGCCGCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGCGCCCGCCTCCGCCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGC 222
Query 1 ---------ATGGCGGCGCTGA------------------------------------------------GCGG 17
||||||||||||| ||||
Sbjct 223 GCTTCGAAGATGGCGGCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGG 296
Query 18 TGGCGGT---------GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCG 82
||||||| ||.||||||||.||||.||||||||||||||||||.||.|||||||||||.|||
Sbjct 297 TGGCGGTGGCGACGGCGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG---- 366
Query 83 GCGCCGGCGCCGGCGCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAA 156
||||||||.|||||||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.|||
Sbjct 367 --GCCGGCGCTGGCGCCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAA 438
Query 157 ATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAAT 230
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct 439 ATGATTAAGTTGACACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAAT 512
Query 231 ATATCTGGAGGCCTATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAAT 304
|||.|||||||||||||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.|||||||
Sbjct 513 ATACCTGGAGGCCTATGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAAT 586
Query 305 CTCTGGGGAACGGAACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCT 378
|.|||||.||.|||.|.||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||
Sbjct 587 CCCTGGGTAATGGAGCAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCT 660
Query 379 AGCCTTTCAGTGCTACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTC 452
|||||||||||||||||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||
Sbjct 661 AGCCTTTCAGTGCTACCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTC 734
Query 453 ACCACAAAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTA 526
||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||
Sbjct 735 ACCACAGAAACCTATCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTA 808
Query 527 CAGTCCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATT 600
||||.||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||
Sbjct 809 CAGTTCGAGACAGTCTAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATT 882
Query 601 CATGATGGGTCT----------------------------------------------TTTCTGGAGCTGA--- 625
||.|||||||.| ||.||||||..||
Sbjct 883 CAGGATGGGTATGGTTTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTT 956
Query 626 ----CTTGAAGAA---AAGAGT----------------ACATCT------------CTTT----ACC------- 653
.||||||.| .|||.| |||.|| |||| |||
Sbjct 957 ACATGTTGAAGTACTGGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCAT 1030
Query 654 --------------------CTGCTGT-------------TTGTCCAAGA----GTGATACATTT--------A 682
|||||.| |||||.||.| ||.|||.|||| .
Sbjct 1031 TTTGTGACTTTTGCCGAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGT 1104
Query 683 TTTGGGAGAGAAGTTCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGA 756
|.|.|.|.|||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 TGTAGTACAGAGGTTCCACTGATGTGTGTAAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGA 1178
Query 757 ACACCACCCAATACCACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCAC 830
.||.||||||.||||||||||.|||||.|||||..|||||||||||||..||||||| ||||.|||||||||
Sbjct 1179 GCATCACCCAGTACCACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCAC 1249
Query 831 CCGCCTCGGACTCTATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCC 904
||.||||.|||||||.||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1250 CCCCCTCAGACTCTACTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCC 1323
Query 905 TTCCGACCAGCAGATGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCA 978
||||||||||||||||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||
Sbjct 1324 TTCCGACCAGCAGATGAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCA 1397
Query 979 TATAAACACAATAGAACCTGTCAATATTGAT------------------------------------GACTTGA 1016
||||||||||||.||.|||||.|||||.||| ||.||||
Sbjct 1398 TATAAACACAATTGAGCCTGTGAATATCGATGAAAAATTCCCAGAAGTGGAATTACAGGATCAAAGGGATTTGA 1471
Query 1017 TTAGAGACCAAGGATTTCGTGGTGATG----------------------------------------------- 1043
||||||||||.||.|||||||||||||
Sbjct 1472 TTAGAGACCAGGGGTTTCGTGGTGATGGAGCCCCCTTGAACCAACTGATGCGCTGTCTTCGGAAATACCAATCC 1545
Query 1044 -------------------------------------------------------------------------G 1044
|
Sbjct 1546 CGGACTCCCAGCCCCCTCCTCCATTCTGTCCCCAGTGAAATAGTGTTTGATTTTGAGCCTGGCCCAGTGTTCAG 1619
Query 1045 AGGATCAACCACAGGTTTGTCTGCTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTAC 1118
|||.|||||||||||.|||||.||.|||||.|||||||||||||||||||||||.|||||||||||||||||||
Sbjct 1620 AGGGTCAACCACAGGCTTGTCCGCCACCCCGCCTGCCTCATTACCTGGCTCACTCACTAACGTGAAAGCCTTAC 1693
Query 1119 AGAAATCTCCAGGACCTCAGCGAGAAAGGAAGTCATCT------TCATCCTCAGAAGACAGGAATCGAATGAAA 1186
|||||||||||||.||||||||.||||||||||||||| ||||||||.||.|||||.|.|||.||||||
Sbjct 1694 AGAAATCTCCAGGTCCTCAGCGGGAAAGGAAGTCATCTTCTTCCTCATCCTCGGAGGACAGAAGTCGGATGAAA 1767
Query 1187 ACACTTGGTAGACGGGACTCGAGTGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGG 1260
||||||||||||.|.||.||.||||||||.|||||||||||||||||.|||||||||||||||||.||||||||
Sbjct 1768 ACACTTGGTAGAAGAGATTCAAGTGATGACTGGGAGATTCCTGATGGACAGATTACAGTGGGACAGAGAATTGG 1841
Query 1261 ATCTGGATCATTTGGAACAGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAG 1334
||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 ATCTGGGTCATTTGGAACTGTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAG 1915
Query 1335 CACCTACACCTCAGCAGTTACAAGCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATC 1408
||||.||||||||.|||.||||.|||||||||||||||||||||||.|||||||||||.|||||||||||||||
Sbjct 1916 CACCCACACCTCAACAGCTACAGGCCTTCAAAAATGAAGTAGGAGTGCTCAGGAAAACTCGACATGTGAATATC 1989
Query 1409 CTACTCTTCATGGGCTATTCCACAAAGCCACAACTGGCTATTGTTACCCAGTCGTGTGAAGGACTCCCAGCTTG 1482
||.||.||||||||||||||.|||||||||||||||||.||||||||.||||.||||| |||.|| |||||||.
Sbjct 1990 CTCCTTTTCATGGGCTATTCTACAAAGCCACAACTGGCAATTGTTACACAGTGGTGTG-AGGGCT-CCAGCTTA 2061
Query 1483 TATCACCATCTCCATATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGACTGCACA 1556
||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||.|||||||||||
Sbjct 2062 TATCACCATCTCCACATCATTGAGACCAAATTTGAGATGATCAAACTTATAGATATTGCTCGGCAGACTGCACA 2135
Query 1557 GGGCATGGATTACTTACACGCCAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAG 1630
||||||||| .|||...|||
Sbjct 2136 GGGCATGGA------GCACCAGAAG------------------------------------------------- 2154
Query 1631 ACCTCACAGTAAAAATAGGTGATTTTGGTCTAGCTACAGTGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAA 1704
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 1705 CAGTTGTCTGGATCCATTTTGTGGATGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCA 1778
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 1779 GTCAGATGTATATGCATTTGGAATTGTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACA 1852
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 1853 ACAGGGACCAGATAATTTTTATGGTGGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGT 1926
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 1927 CCAAAAGCCATGAAGAGATTAATGGCAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAAT 2000
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 2001 TCTCGCCTCTATTGAGCTGCTGGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATC 2074
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 2075 GGGCTGGTTTCCAAACAGAGGATTTTAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGA 2148
Sbjct 2155 -------------------------------------------------------------------------- 2154
Query 2149 TATGGTGCGTTTCCTGTCCAC 2169
Sbjct 2155 --------------------- 2154