Nucleotide Global Alignment

Description

• Query: TRCN0000481604
• Subject: XM_017011749.1
• Aligned Length: 3489
• Identities: 1771
• Gaps: 1616

Alignment

Query    1  ATGGCGACCTCCGAGAGGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CTGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTC  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  GGACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGG  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  AGGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  GGGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATA  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  TGTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATC  518
                                                                            ||||||||||
Sbjct    1  ----------------------------------------------------------------ATGCCTTATC  10

Query  519  TCCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   11  TCCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAG  84

Query  593  GCGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   85  GCGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTT  158

Query  667  GGATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  159  GGATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACA  232

Query  741  ATAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTCTGAGCAATAACCAGATTGAG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  233  ATAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTCTGAGCAATAACCAGATTGAG  306

Query  815  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  380

Query  889  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  454

Query  963  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  455  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  528

Query 1037  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  529  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  602

Query 1111  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  676

Query 1185  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  677  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCCCCTTATCCCATGCTGATACTA  750

Query 1259  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  751  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  824

Query 1333  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  825  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  898

Query 1407  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  899  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  972

Query 1481  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  973  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1046

Query 1555  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1120

Query 1629  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATATTAAA  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATATTAAA  1194

Query 1703  ATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCCTACCAAAAACT  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195  ATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCCTACCAAAAACT  1268

Query 1777  GAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACTTGCCAAGAGTTTGGCTACAACTGCAG------  1844
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||      
Sbjct 1269  GAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGCAGGAG  1342

Query 1845  -----------ATGTTAAGA---------------CATCCCACCT------------------------GAAAC  1868
                       |.|  ||||               ||.|.|||||                        |||| 
Sbjct 1343  CTCCCGCTAGCAAG--AAGACTGTCTCTGGGGTGCCAGCACACCTGGTTCCATCTCCCAGGTGCTTGGCGAAA-  1413

Query 1869  CTG-AAGC------------------GCATC---CTACAAAGTATATT----------TCTTCGAATAT----G  1906
            ||| ||||                  |||||   ||..||.|.|.|||          .|.|.|||.||    |
Sbjct 1414  CTGCAAGCAGATGGCCAGATGACAGAGCATCTCTCTGGAATGCAAATTCATGCCAAGGACCTAGAAAATCAGAG  1487

Query 1907  GGTGATTTCCT-----------------------------------------------GCATTCTACAGACAG-  1932
            .|| |..||||                                               ||.||||.|.||||| 
Sbjct 1488  CGT-AACTCCTGCCCAGAACCAAGAGCTGGCTCAGGATGGAGAAACCCATCAAAAAGAGCTTTCTCCTGACAGC  1560

Query 1933  ---------------------AAACTACCTCATTAAAT----TTTGGGCCAAACTT--TCAG-----CCAAAA-  1973
                                 .||| ||||||.|..||    ..||||    .|||  ||||     |||..| 
Sbjct 1561  CATCTCAATCCTGAGCTCCCTCAAC-ACCTCAGTTCATCAGCACTGGG----TCTTCCTCAGCAGGCCCAGGAC  1629

Query 1974  --------AAACACCAGCGGAA-----------------AGAGATT---CTATACACAGACAG-CAC-GAGGCA  2017
                    |||| |||.|||||                 |||..||   ||| |.|||.|.|| ||| |||.||
Sbjct 1630  CTATCCCTAAAC-CCAACGGAAGAGGATGTCCAACAATCAGATCTTCCCCTA-AAACAAATAGCCACTGAGACA  1701

Query 2018  G----CCCGGCAAGCTCTAA-----------TGGGAAGGATACGCCCTGATCACAC-----------ACTCCTA  2065
            |    |||.|  ||.|..||           ||||.||   .|.|||  |||||.|           .|||||.
Sbjct 1702  GATGTCCCTG--AGGTGGAAGCCAGTGAGGTTGGGCAG---TCTCCC--ATCACCCCGACCCTGGTGCCTCCTG  1768

Query 2066  T------TTC------------------------------------AAAGGGGTC----CAGTACCAG------  2087
            |      |||                                    .||||.|||    .||..||||      
Sbjct 1769  TGCACCCTTCCCCTCCCTCGTCCCGCAGCCCTCAGCCAGGCCAGGACAAGGAGTCAGGGGAGGCCCAGGTAACC  1842

Query 2088  ----------CACCTCTCACCAGTGGTCTACACTATTATACA-------------ACT-----------TTAGA  2127
                      |.|||||        ||||..||  .|.||||             |||           |.|| 
Sbjct 1843  CCTACTGGCCCTCCTCT--------GTCTGAAC--CTCTACAGGGACCTGGCCCCACTCCCCTCAGCCCTCAG-  1905

Query 2128  AGAACTCTGGA-----AAAGTTTTGA-TCTTTGTGAAGACTATTTTAAACCTCCA--------TTTGGACCAT-  2186
            ||||.||.|||     |||   |||| ||       ||||      ||||.||||        ||...||||| 
Sbjct 1906  AGAATTCAGGATGAGGAAA---TTGAGTC-------AGAC------AAACTTCCACCCAGCAGTTCCCACCATG  1963

Query 2187  ATCCT-GAAAAGAGTGGGAAGGATTC------------CTTGGTTTCCATGAAA--TGTT--CATTGTTTC---  2240
            ||||| .||||          |||||            |||||  |.|| ||||  ||.|  |   |.|||   
Sbjct 1964  ATCCTCCAAAA----------GATTCTTCCCACACTGACTTGG--TGCA-GAAACTTGCTGGC---GATTCTCA  2021

Query 2241  ---GGTTCTG----------------------------TCCGTGGTCA-----------AAAGAATTGC-----  2267
               .|.||||                            |||| .||||           ..||||.|||     
Sbjct 2022  GCAAGCTCTGAAGGAGGAAACCTCCAAACCGGAAGCCATCCG-AGTCAGTATCCCTCACCCAGAACTGCCACAT  2094

Query 2268  --------CTT--------------TCCAGCCTCCGG--AGGGGAG---------CATTTCTTCACACCTAGGA  2308
                    |||              ..|||||.|.||  |||||||         |.||.|||    |||||.|
Sbjct 2095  CCCCAAGACTTAGCAACAGATACCAAGCAGCCCCAGGCCAGGGGAGCCCCGGGGACCTTGCTT----CCTAGAA  2164

Query 2309  -------------------------------TCAGGAG-----------CCAGTGACAGTGAGACCGAAGAGAC  2340
                                           |||||.|           ||||.| ||| |||.||   .|.||
Sbjct 2165  GCCGGCTGGCTCCCACTCGGCTGCCCCAGCCTCAGGTGCTGGCTCCCCTCCAGAG-CAG-GAGGCC---CACAC  2233

Query 2341  CCGGAAAGCACTACCTAT--------------------------ACAATCATTTTCACATGAAA--AAGA--GT  2384
            ||  ||   ||| |||||                          ||||.|    ||.|||.|||  |.||  ||
Sbjct 2234  CC--AA---ACT-CCTATCGCCCAGCAGGGAAGAGGCTTTAGGAACAACC----TCCCATCAAACCATGACGGT  2297

Query 2385  CT------------CACCAAC-------ACAGACA-----ACACTCGGTCCCAGTCATCAGTCGCCCAGGTTCC  2434
            ||            |||||||       .||||||     |.|||...||||| |||      ||||    |||
Sbjct 2298  CTCTCCCAGGCTTCCACCAACCCGGGAAGCAGACACCAGTAAACTTCCTCCCA-TCA------GCCC----TCC  2360

Query 2435  -AACGTCAAACCCACCCTCCC---TCCAATCCCTCAGG--GCC-----------GCAGG---------------  2476
             .|| |||||.|||||  .||   ||..|.|||.||||  |||           |||.|               
Sbjct 2361  GCAC-TCAAAACCACC--ACCAAATCTGAGCCCCCAGGCAGCCCACAGTCTTCAGCAAGTCCAGGAAGAGAAGG  2431

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2432  TCAGTGAGGTGAAACTCCCTCTTATCAGTCCCCCCAGCCAGGAGCAAGCAGAACCTCGCATCCTCAGTCCCGCC  2505

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2506  CAGGAGGAGGCGGCTCAGAAAGTGAGGCTCCCTCGCATTCCTGCTCCTCTTCCGGAGCCAGGGCTGCCCCAGAA  2579

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2580  CTCGGGGACTCAGCCTGATCCAAGGCCTGCAAAGGAAAGGAAAGCTCCCCAAGCAGGCAGCTCCTCCAGGAGGA  2653

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2654  AGATTCCAGACATGCGGGCCTCACCCCACAACCAGGGGCCACTTCAGCAGACAGGGGCTAGGGAAAAAAAGCTC  2727

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2728  CCCAACCAGAAAGGGACGGCTAGAGGACTGGCACCTCTGGAAGAGGCACCACCTGGGAACCACCAGCCAGCCTT  2801

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2802  GCAGCTAGAACCCCACGATCAGCCAGCTCCCACCATGGTGCCCGACGATCCCAACCCCAGCCCTCCTCTTGTTT  2875

Query 2477  -----------  2476
                       
Sbjct 2876  CTTGTCTAAGC  2886