Nucleotide Global Alignment
Description
- Query:
- TRCN0000488943
- Subject:
- XM_017319955.1
- Aligned Length:
- 2982
- Identities:
- 1458
- Gaps:
- 1380
Alignment
Query 1 ATGGTTTTTCAAACTCGGTACCCTTCATGGATTATTTTATGCTACATCTGGCTGCTCCGCTTTGCACACACAGG 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGAGGCGCAGGCTGCGAAGGAAGTACTACTGCTGGATTCTAAAGCACAACAAACAGAGTTGGAGTGGATTTCCT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CTCCACCCAATGGGTGGGAAGAAATTAGTGGTTTGGATGAGAACTATACCCCGATACGAACATACCAGGTGTGC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CAAGTCATGGAGCCCAACCAAAACAACTGGCTGCGGACTAACTGGATTTCCAAAGGCAATGCACAAAGGATTTT 296
||||||||||||||.|||||||||||||||||||||||||||||.||||||||.||||||||||||||
Sbjct 1 ------ATGGAGCCCAACCAGAACAACTGGCTGCGGACTAACTGGATTTCTAAAGGCAACGCACAAAGGATTTT 68
Query 297 TGTAGAATTGAAATTCACCCTGAGGGATTGTAACAGTCTTCCTGGAGTACTGGGAACTTGCAAGGAAACATTTA 370
|||||||||||||||||||.|||||||||||||.||||||||.|||||.||||||||||||||||||||.||||
Sbjct 69 TGTAGAATTGAAATTCACCTTGAGGGATTGTAATAGTCTTCCCGGAGTCCTGGGAACTTGCAAGGAAACGTTTA 142
Query 371 ATTTGTACTATTATGAAACAGACTATGACACTGGCAGGAATATAAGAGAAAACCTCTATGTAAAAATAGACACC 444
|||||||||||||||||||||||||.|||||.||||||||||||.||||||||||.|||||.||||||||||||
Sbjct 143 ATTTGTACTATTATGAAACAGACTACGACACCGGCAGGAATATACGAGAAAACCTTTATGTTAAAATAGACACC 216
Query 445 ATTGCTGCAGATGAAAGTTTTACCCAAGGTGACCTTGGTGAAAGAAAGATGAAGCTTAACACTGAGGTGAGAGA 518
||||||||||||||||||||.||.||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 217 ATTGCTGCAGATGAAAGTTTCACACAAGGTGACCTTGGTGAAAGAAAGATGAAGCTGAACACTGAGGTGAGAGA 290
Query 519 GATTGGACCTTTGTCCAAAAAGGGATTCTATCTTGCCTTTCAGGATGTAGGGGCTTGCATAGCTTTGGTTTCTG 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 291 GATTGGACCTTTGTCCAAAAAGGGATTCTATCTTGCCTTTCAGGATGTAGGGGCTTGCATAGCATTGGTTTCTG 364
Query 593 TCAAAGTGTACTACAAGAAGTGCTGGTCCATTATTGAGAACTTAGCTATCTTTCCAGATACAGTGACTGGTTCA 666
||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||||||||||||||||.
Sbjct 365 TCAAAGTGTACTACAAGAAGTGCTGGTCCATTGTTGAGAACTTAGCTGTCTTTCCAGATACAGTGACTGGTTCG 438
Query 667 GAATTTTCCTCTTTAGTCGAGGTTCGAGGGACATGTGTCAGCAGTGCAGAGGAAGAAGCGGAAAACGCCCCCAG 740
|||||||||||.|||||||||||.||.||||||||||||||||||||.||||||||.||.|||||..|||||||
Sbjct 439 GAATTTTCCTCCTTAGTCGAGGTCCGTGGGACATGTGTCAGCAGTGCCGAGGAAGAGGCAGAAAATTCCCCCAG 512
Query 741 GATGCACTGCAGTGCAGAAGGAGAATGGTTAGTGCCCATTGGAAAATGTATCTGCAAAGCAGGCTACCAGCAAA 814
.|||||.|||||||||||||||||.|||.||||.||||||||||||||.|||||||||||||||||.|||||||
Sbjct 513 AATGCATTGCAGTGCAGAAGGAGAGTGGCTAGTACCCATTGGAAAATGCATCTGCAAAGCAGGCTATCAGCAAA 586
Query 815 AAGGAGACACTTGTGAACCCTGTGGCCGTGGGTTCTACAAGTCTTCCTCTCAAGATCTTCAGTGCTCTCGTTGT 888
||||.||||||||.||||||||||||||..||||||||||.|||||||||||.|||||.|||||.|||||||||
Sbjct 587 AAGGGGACACTTGCGAACCCTGTGGCCGCAGGTTCTACAAATCTTCCTCTCAGGATCTCCAGTGTTCTCGTTGT 660
Query 889 CCAACTCACAGTTTTTCTGATAAAGAAGGCTCCTCCAGATGTGAATGTGAAGATGGGTATTACAGGGCTCCATC 962
|||||.|||||.||.|||||...||||||.||.|||||.||||||||||||||||||||.|||||.|||||.||
Sbjct 661 CCAACCCACAGCTTCTCTGACCGAGAAGGATCATCCAGGTGTGAATGTGAAGATGGGTACTACAGAGCTCCTTC 734
Query 963 TGACCCACCATACGTTGCATGCACAAGGCCTCCATCTGCACCACAGAACCTCATTTTCAACATCAACCAAACCA 1036
|||.||||||||||||||||||||.||||||||.|||||||||||||||||.||||||||.|||||.|||||.|
Sbjct 735 TGATCCACCATACGTTGCATGCACGAGGCCTCCCTCTGCACCACAGAACCTTATTTTCAATATCAATCAAACGA 808
Query 1037 CAGTAAGTTTGGAATGGAGTCCTCCTGCAGACAATGGGGGAAGAAACGATGTGACCTACAGAATATTGTGTAAG 1110
|.|||||||||||||||||||||||.||.|||||.|||||||||||||||||.||||||||||||.||||||||
Sbjct 809 CTGTAAGTTTGGAATGGAGTCCTCCGGCTGACAACGGGGGAAGAAACGATGTCACCTACAGAATACTGTGTAAG 882
Query 1111 CGGTGCAGTTGGGAGCAGGGCGAATGTGTTCCCTGTGGGAGTAACATTGGATACATGCCCCAGCAGACTGGATT 1184
||||||||||||||.|||||.||||||||.||.||.||.|||||||||||||||||||||||||||||.|||||
Sbjct 883 CGGTGCAGTTGGGAACAGGGAGAATGTGTGCCATGCGGAAGTAACATTGGATACATGCCCCAGCAGACGGGATT 956
Query 1185 AGAGGATAACTATGTCACTGTCATGGACCTGCTAGCCCACGCTAATTATACTTTTGAAGTTGAAGCTGTAAATG 1258
||||||||||||||||||||||||||||||.||.|||||.||.|||||.|||||.|||||||||||||||||||
Sbjct 957 AGAGGATAACTATGTCACTGTCATGGACCTACTTGCCCATGCAAATTACACTTTCGAAGTTGAAGCTGTAAATG 1030
Query 1259 GAGTTTCTGACTTAAGCCGATCCCAGAGGCTCTTTGCTGCTGTCAGTATCACCACTGGTCAAGCAGCTCCCTCG 1332
|||||||.|||||||||.||||||||||||||||.||||||||.||.||||||||.||||||||||||||||||
Sbjct 1031 GAGTTTCGGACTTAAGCAGATCCCAGAGGCTCTTCGCTGCTGTTAGCATCACCACCGGTCAAGCAGCTCCCTCG 1104
Query 1333 CAAGTGAGCGGAGTAATGAAGGAGAGAGTACTGCAGCGGAGTGTCGAGCTTTCCTGGCAGGAACCAGAGCATCC 1406
||||||||.|||||.|||||||||.|||||||||||||||||||..||||||||||||||||.||.||||||||
Sbjct 1105 CAAGTGAGTGGAGTCATGAAGGAGCGAGTACTGCAGCGGAGTGTGCAGCTTTCCTGGCAGGAGCCGGAGCATCC 1178
Query 1407 CAATGGAGTCATCACAGAATATGAAATCAAGTATTACGAGAAAGATCAAAGGGAACGGACCTACTCAACAGTAA 1480
|||||||||||||||.||||||||||||||||||||.||||||||||||.|||||.||||.|||||||||.|.|
Sbjct 1179 CAATGGAGTCATCACGGAATATGAAATCAAGTATTATGAGAAAGATCAACGGGAAAGGACGTACTCAACACTCA 1252
Query 1481 AAACCAAGTCTACTTCAGCCTCCATTAATAATCTGAAACCAGGAACAGTGTATGTTTTCCAGATTCGGGCTTTT 1554
||||||||||.||.||.|||||||||||||||||||||||.|||||||||||.||.||.|||||.|||||..|.
Sbjct 1253 AAACCAAGTCCACCTCCGCCTCCATTAATAATCTGAAACCGGGAACAGTGTACGTCTTTCAGATCCGGGCGGTC 1326
Query 1555 ACTGCTGCTGGTTATGGAAATTACAGTCCCAGACTTGATGTTGCTACACTAGAGGAAGCTACAGGTAAAATGTT 1628
||||||||.|||||||||||.|||||.||.||.|||||||||||.|||||.|||||||||.|||||||||||||
Sbjct 1327 ACTGCTGCCGGTTATGGAAACTACAGCCCTAGGCTTGATGTTGCCACACTTGAGGAAGCTTCAGGTAAAATGTT 1400
Query 1629 TGAAGCTACAGCTGTCTCCAGTGAACAGAATCCTGTTATTATCATTGCTGTGGTTGCTGTAGCTGGGACCATCA 1702
||||||.|||||.|||||||||||||||||||||||.||.||.||||||||.||.||||||||.||||||||||
Sbjct 1401 TGAAGCGACAGCAGTCTCCAGTGAACAGAATCCTGTCATCATAATTGCTGTAGTGGCTGTAGCAGGGACCATCA 1474
Query 1703 TTTTGGTGTTCATGGTCTTTGGCTTCATCATTGGGAGAAGGCACTGTGGTTATAGCAAAGCTGACCAAGAAGGC 1776
|.||||||||||||||.||.||||||||||||||.|||||||||||||||||||||||.||||||||||||||.
Sbjct 1475 TCTTGGTGTTCATGGTGTTCGGCTTCATCATTGGAAGAAGGCACTGTGGTTATAGCAAGGCTGACCAAGAAGGG 1548
Query 1777 GATGAAGAGCTTTACTTTCATTGCACCAAAACCTACATTGACCCTGAAACCTATGAGGACCCAAATAGAGCTGT 1850
||||||||.||.|||||||||| |.|| .|.|||..|||||.|| ||||
Sbjct 1549 GATGAAGAACTCTACTTTCATT-------------CTTT-----AGTAACAAATGAGCAC----------CTGT 1594
Query 1851 CCATCAATTCGCCAAGGAGCTAGATGCCTCCTGTATTAAAATTGAGCGTGTGATTGGTGCAGGAGAATTCGGTG 1924
|.||.|||
Sbjct 1595 ------------------------------CAGTTTTA------------------------------------ 1602
Query 1925 AAGTCTGCAGTGGCCGTTTGAAACTTCCAGGGAAAAGAGATGTTGCAGTAGCCATAAAAACCCTGAAAGTTGGT 1998
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 1999 TACACAGAAAAACAAAGGAGAGACTTTTTGTGTGAAGCAAGCATCATGGGGCAGTTTGACCACCCAAATGTTGT 2072
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2073 CCATTTGGAAGGGGTTGTTACAAGAGGGAAACCAGTCATGATAGTAATAGAGTTCATGGAAAATGGAGCCCTAG 2146
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2147 ATGCATTTCTCAGGAAACATGATGGGCAATTTACAGTCATTCAGTTAGTAGGAATGCTGAGAGGAATTGCTGCT 2220
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2221 GGAATGAGATATTTGGCTGATATGGGATATGTTCACAGGGACCTTGCAGCTCGCAATATTCTTGTCAACAGCAA 2294
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2295 TCTCGTTTGTAAAGTGTCAGATTTTGGCCTGTCCCGAGTTATAGAGGATGATCCAGAAGCTGTCTATACAACTA 2368
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2369 CTGGTGGAAAAATTCCAGTAAGGTGGACAGCACCCGAAGCCATCCAGTACCGGAAATTCACATCAGCCAGTGAT 2442
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2443 GTATGGAGCTATGGAATAGTCATGTGGGAAGTTATGTCTTATGGAGAAAGACCTTATTGGGACATGTCAAATCA 2516
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2517 AGATGTTATAAAAGCAATAGAAGAAGGTTATCGTTTACCAGCACCCATGGACTGCCCAGCTGGCCTTCACCAGC 2590
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2591 TAATGTTGGATTGTTGGCAAAAGGAGCGTGCTGAAAGGCCAAAATTTGAACAGATAGTTGGAATTCTAGACAAA 2664
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2665 ATGATTCGAAACCCAAATAGTCTGAAAACTCCCCTGGGAACTTGTAGTAGGCCAATAAGCCCTCTTCTGGATTA 2738
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2739 AAACACTCCTGATTTCACTACCTTTTGTTCAGTTGGAGAATGGCTACAAGCTATTAAGATGGAAAGATATAAAG 2812
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2813 ATAATTTCACGGCAGCTGGCTACAATTCCCTTGAATCAGTAGCCAGGATGACTATTGAGGATGTGATGAGTTTA 2886
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2887 GGGATCACACTGGTTGGTCATCAAAAGAAAATCATGAGCAGCATTCAGACTATGAGAGCACAAATGCTACATTT 2960
Sbjct 1603 -------------------------------------------------------------------------- 1602
Query 2961 ACATGGAACTGGCATTCAAGTG 2982
Sbjct 1603 ---------------------- 1602
