Nucleotide Global Alignment

Description

Query:
TRCN0000489494
Subject:
XR_001785085.1
Aligned Length:
2734
Identities:
1187
Gaps:
1448

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCATGGAAACTGTGCGGGTAGAAACGTGTGAGCGCGAGGGTGGTTGGAGGAGAAGGAACACTCCCCTGGCGACA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCGGCGCGAGGGTGCTCCTCGGATGACGTCACGCACCCAGGTGACGTCACGACCGTGACATGCGGGTGACGCCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTCGGCTGCGCCGGGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCTCCGCGCCCGCCTCCG  296

Query    1  --------------------------------------------------------------------ATGGCG  6
                                                                                ||||||
Sbjct  297  CCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGCGCTTCGAAGATGGCG  370

Query    7  GCGCTGA------------------------------------------------GCGGTGGCGGT--------  24
            |||||||                                                |||||||||||        
Sbjct  371  GCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGGCGACGG  444

Query   25  -GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGCG  97
             ||.||||||||.||||.||||||||||||||||||.||.|||||||||||.|||      ||||||||.||||
Sbjct  445  CGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG------GCCGGCGCTGGCG  512

Query   98  CCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAAATGATTAAGTTGACA  171
            |||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.||||||||||||||||||
Sbjct  513  CCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAAATGATTAAGTTGACA  586

Query  172  CAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGAGGCCTA  245
            ||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.|||||||||||
Sbjct  587  CAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAATATACCTGGAGGCCTA  660

Query  246  TGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAATCTCTGGGGAACGGAA  319
            ||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.||||||||.|||||.||.|||.
Sbjct  661  TGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAATCCCTGGGTAATGGAG  734

Query  320  CTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCTAGCCTTTCAGTGCTA  393
            |.||||||||||||||||||||||||||||||||.|||||||||||.||.||||||||||||||||||||||||
Sbjct  735  CAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCTAGCCTTTCAGTGCTA  808

Query  394  CCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTCACCACAAAAACCTAT  467
            ||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||||||||.||||||||
Sbjct  809  CCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTCACCACAGAAACCTAT  882

Query  468  CGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTACAGTCCGAGACAGTC  541
            ||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.||||||||||
Sbjct  883  CGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTACAGTTCGAGACAGTC  956

Query  542  TAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATTCAGGATGG-------  608
            ||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||       
Sbjct  957  TAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATTCAGGATGGGTATGGT  1030

Query  609  --AGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAGAAGAATTGCATGTGGAAGTGTT  680
              ||||||||||||||||||.||||||||.||.||||||||||||||||||||.||.||.|||||.|||||..|
Sbjct 1031  TTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTTACATGTTGAAGTACT  1104

Query  681  GGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACCTTAGCATTTTGTGACTTTTGTC  754
            |||||||||.||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||.|
Sbjct 1105  GGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCATTTTGTGACTTTTGCC  1178

Query  755  GAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAAGTT  828
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1179  GAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAGGTT  1252

Query  829  CCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCCAATACC  902
            ||||||||||||||.|||||||||||||||||                   ||||||||.||.||||||.||||
Sbjct 1253  CCACTGATGTGTGTAAATTATGACCAACTTGA-------------------TTCTTTGAGCATCACCCAGTACC  1307

Query  903  ACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCTA  976
            ||||||.|||||.|||||..|||||||||||||..|||||||   ||||.|||||||||||.||||.|||||||
Sbjct 1308  ACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCACCCCCCTCAGACTCTA  1378

Query  977  TTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGAT  1050
            .||||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379  CTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGAT  1452

Query 1051  GAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAGA  1124
            |||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||||||||||||||.||
Sbjct 1453  GAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCATATAAACACAATTGA  1526

Query 1125  ACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATGGAGGATCAACCACAGGTTTGTCTG  1198
            .|||||.|||||.|||||.||||||||||||||.||.|||||||||||||||||.|||||||||||.|||||.|
Sbjct 1527  GCCTGTGAATATCGATGATTTGATTAGAGACCAGGGGTTTCGTGGTGATGGAGGGTCAACCACAGGCTTGTCCG  1600

Query 1199  CTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGCCTTACAGAAATCTCCAGGACCTCAGCGA  1272
            |.|||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||.||||||||.
Sbjct 1601  CCACCCCGCCTGCCTCATTACCTGGCTCACTCACTAACGTGAAAGCCTTACAGAAATCTCCAGGTCCTCAGCGG  1674

Query 1273  GAAAGGAAGTCATCT------TCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACTCGAG  1340
            |||||||||||||||      ||||||||.||.|||||.|.|||.|||                          
Sbjct 1675  GAAAGGAAGTCATCTTCTTCCTCATCCTCGGAGGACAGAAGTCGGATG--------------------------  1722

Query 1341  TGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACAGTCT  1414
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 1415  ACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTTACAA  1488
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 1489  GCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATTCCAC  1562
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 1563  AAAGCCACAACTGGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTGTATCACCATCTCCATATCATTGAGA  1636
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 1637  CCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACACGCCAAG  1710
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 1711  TCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGGTGATTT  1784
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 1785  TGGTCTAGCTACAGTGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTTTGTGGA  1858
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 1859  TGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTTGGAATT  1932
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 1933  GTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCAGATAATTTTTATGGT  2006
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 2007  GGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTAATGG  2080
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 2081  CAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTGCTGGCC  2154
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 2155  CGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGAGGATTT  2228
                                                                                      
Sbjct 1723  --------------------------------------------------------------------------  1722

Query 2229  TAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTTCCTGTCCAC  2298
                                                                                  
Sbjct 1723  ----------------------------------------------------------------------  1722

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.