Nucleotide Global Alignment
Description
- Query:
- TRCN0000489494
- Subject:
- XR_001785086.1
- Aligned Length:
- 2738
- Identities:
- 1095
- Gaps:
- 1551
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCCATGGAAACTGTGCGGGTAGAAACGTGTGAGCGCGAGGGTGGTTGGAGGAGAAGGAACACTCCCCTGGCGAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCGGCGCGAGGGTGCTCCTCGGATGACGTCACGCACCCAGGTGACGTCACGACCGTGACATGCGGGTGACGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTTGCCGCGGCGACTCCTCGTCGTCTCCGCCCCCTCCCCCCCCCAAATCCCCTCAGGCTCGGCTGCGCCGGGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCCGGCGGGTTCCAGAGGTGGCCTCCGCCCCGGCCGCTCCGCCCACGCCCCCCGCGCCTCCGCGCCCGCCTCC 296
Query 1 ---------------------------------------------------------------------ATGGC 5
|||||
Sbjct 297 GCCCGCCCTGCGCCTCCCTTCCCCCTCCCCGCCCCGCGGCGGCCGCTCGGCCCGGCTCGCGCTTCGAAGATGGC 370
Query 6 GGCGCTGA------------------------------------------------GCGGTGGCGGT------- 24
|||||||| |||||||||||
Sbjct 371 GGCGCTGAGTGGCGGCGGTGGCAGCAGCAGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGTGGCGGTGGCGACG 444
Query 25 --GGTGGCGGCGCGGAGCCGGGCCAGGCTCTGTTCAACGGGGACATGGAGCCCGAGGCCGGCGCCGGCGCCGGC 96
||.||||||||.||||.||||||||||||||||||.||.|||||||||||.||| ||||||||.|||
Sbjct 445 GCGGCGGCGGCGCCGAGCAGGGCCAGGCTCTGTTCAATGGCGACATGGAGCCGGAG------GCCGGCGCTGGC 512
Query 97 GCCGCGGCCTCTTCGGCTGCGGACCCTGCCATTCCGGAGGAGGTGTGGAATATCAAACAAATGATTAAGTTGAC 170
||||||||||||||||||||||||||.||||||||.||.|||||.|||||||||||.|||||||||||||||||
Sbjct 513 GCCGCGGCCTCTTCGGCTGCGGACCCGGCCATTCCTGAAGAGGTATGGAATATCAAGCAAATGATTAAGTTGAC 586
Query 171 ACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGGGAGCATAATCCACCATCAATATATCTGGAGGCCT 244
|||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||||||
Sbjct 587 ACAGGAACATATAGAGGCCCTATTGGACAAATTTGGTGGAGAGCATAACCCACCATCAATATACCTGGAGGCCT 660
Query 245 ATGAAGAATACACCAGCAAGCTAGATGCACTCCAACAAAGAGAACAACAGTTATTGGAATCTCTGGGGAACGGA 318
|||||||.||||||||||||||||||||.||.||.|||||||||||.|||.|.||||||||.|||||.||.|||
Sbjct 661 ATGAAGAGTACACCAGCAAGCTAGATGCCCTTCAGCAAAGAGAACAGCAGCTTTTGGAATCCCTGGGTAATGGA 734
Query 319 ACTGATTTTTCTGTTTCTAGCTCTGCATCAATGGATACCGTTACATCTTCTTCCTCTTCTAGCCTTTCAGTGCT 392
.|.||||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||||||
Sbjct 735 GCAGATTTTTCTGTTTCTAGCTCTGCATCAATGGACACCGTTACATCCTCCTCCTCTTCTAGCCTTTCAGTGCT 808
Query 393 ACCTTCATCTCTTTCAGTTTTTCAAAATCCCACAGATGTGGCACGGAGCAACCCCAAGTCACCACAAAAACCTA 466
|||.||||||||||||||||||||||.|||||||||||...||||||.||||||||||||||||||.|||||||
Sbjct 809 ACCATCATCTCTTTCAGTTTTTCAAACTCCCACAGATGCATCACGGAACAACCCCAAGTCACCACAGAAACCTA 882
Query 467 TCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCTGCAAGGTGTGGAGTTACAGTCCGAGACAGT 540
|||||||||||||||||||||||||||||||||||||||||||.|||||.|||||.||||||||.|||||||||
Sbjct 883 TCGTTAGAGTCTTCCTGCCCAACAAACAGAGGACAGTGGTACCCGCAAGATGTGGTGTTACAGTTCGAGACAGT 956
Query 541 CTAAAGAAAGCACTGATGATGAGAGGTCTAATCCCAGAGTGCTGTGCTGTTTACAGAATTCAGGATGG------ 608
|||||||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||
Sbjct 957 CTAAAGAAAGCACTGATGATGAGAGGTCTCATCCCAGAATGCTGTGCTGTTTACAGAATTCAGGATGGGTATGG 1030
Query 609 ---AGAGAAGAAACCAATTGGTTGGGACACTGATATTTCCTGGCTTACTGGAGAAGAATTGCATGTGGAAGTGT 679
||||||||||||||||||.||||||||.||.||||||||||||||||||||.||.||.|||||.|||||..
Sbjct 1031 TTTAGAGAAGAAACCAATTGGCTGGGACACGGACATTTCCTGGCTTACTGGAGAGGAGTTACATGTTGAAGTAC 1104
Query 680 TGGAGAATGTTCCACTTACAACACACAACTTTGTACGAAAAACGTTTTTCACCTTAGCATTTTGTGACTTTTGT 753
||||||||||.||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||.
Sbjct 1105 TGGAGAATGTCCCACTTACAACACACAACTTTGTACGGAAAACTTTTTTCACCTTAGCATTTTGTGACTTTTGC 1178
Query 754 CGAAAGCTGCTTTTCCAGGGTTTCCGCTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAAGT 827
||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1179 CGAAAGCTGCTTTTCCAGGGTTTCCGTTGTCAAACATGTGGTTATAAATTTCACCAGCGTTGTAGTACAGAGGT 1252
Query 828 TCCACTGATGTGTGTTAATTATGACCAACTTGATTTGCTGTTTGTCTCCAAGTTCTTTGAACACCACCCAATAC 901
|||||||||||||||.||||||||||||||||| ||||||||.||.||||||.|||
Sbjct 1253 TCCACTGATGTGTGTAAATTATGACCAACTTGA-------------------TTCTTTGAGCATCACCCAGTAC 1307
Query 902 CACAGGAAGAGGCGTCCTTAGCAGAGACTGCCCTAACATCTGGATCATCCCCTTCCGCACCCGCCTCGGACTCT 975
|||||||.|||||.|||||..|||||||||||||..||||||| ||||.|||||||||||.||||.||||||
Sbjct 1308 CACAGGAGGAGGCCTCCTTCCCAGAGACTGCCCTTCCATCTGG---ATCCTCTTCCGCACCCCCCTCAGACTCT 1378
Query 976 ATTGGGCCCCAAATTCTCACCAGTCCGTCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGA 1049
|.||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACTGGGCCCCAAATCCTCACCAGTCCATCTCCTTCAAAATCCATTCCAATTCCACAGCCCTTCCGACCAGCAGA 1452
Query 1050 TGAAGATCATCGAAATCAATTTGGGCAACGAGACCGATCCTCATCAGCTCCCAATGTGCATATAAACACAATAG 1123
||||||||||||.|||||.|||||||||||||||||.|||||.||||||||||||||.||||||||||||||.|
Sbjct 1453 TGAAGATCATCGCAATCAGTTTGGGCAACGAGACCGGTCCTCCTCAGCTCCCAATGTTCATATAAACACAATTG 1526
Query 1124 AACCTGTCAATATTGATGACTTGATTAGAGACCAAGGATTTCGTGGTGATGGAGGATCAACCACAGGTTTGTCT 1197
|.|||||.|||||.|||||.||||||||||||||.||.||||||||||||||||
Sbjct 1527 AGCCTGTGAATATCGATGATTTGATTAGAGACCAGGGGTTTCGTGGTGATGGAG-------------------- 1580
Query 1198 GCTACCCCCCCTGCCTCATTACCTGGCTCACTAACTAACGTGAAAGC-----CTTACAGAAAT----CTCCAGG 1262
|||||.|| |||.||| || |.|| ||| |.||||| .|||.||
Sbjct 1581 -----CCCCCTTG-------------------AACCAAC-TG-ATGCGCTGTCTT-CGGAAATACCAATCCCGG 1627
Query 1263 ACCTCAGCGAGAAAGGAAGTCATCTTCATCCTCAGAAGACAGGAATCGAATGAAAACACTTGGTAGACGGGACT 1336
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1337 CGAGTGATGATTGGGAGATTCCTGATGGGCAGATTACAGTGGGACAAAGAATTGGATCTGGATCATTTGGAACA 1410
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1411 GTCTACAAGGGAAAGTGGCATGGTGATGTGGCAGTGAAAATGTTGAATGTGACAGCACCTACACCTCAGCAGTT 1484
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1485 ACAAGCCTTCAAAAATGAAGTAGGAGTACTCAGGAAAACACGACATGTGAATATCCTACTCTTCATGGGCTATT 1558
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1559 CCACAAAGCCACAACTGGCTATTGTTACCCAGTGGTGTGAGGGCTCCAGCTTGTATCACCATCTCCATATCATT 1632
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1633 GAGACCAAATTTGAGATGATCAAACTTATAGATATTGCACGACAGACTGCACAGGGCATGGATTACTTACACGC 1706
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1707 CAAGTCAATCATCCACAGAGACCTCAAGAGTAATAATATATTTCTTCATGAAGACCTCACAGTAAAAATAGGTG 1780
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1781 ATTTTGGTCTAGCTACAGTGAAATCTCGATGGAGTGGGTCCCATCAGTTTGAACAGTTGTCTGGATCCATTTTG 1854
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1855 TGGATGGCACCAGAAGTCATCAGAATGCAAGATAAAAATCCATACAGCTTTCAGTCAGATGTATATGCATTTGG 1928
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 1929 AATTGTTCTGTATGAATTGATGACTGGACAGTTACCTTATTCAAACATCAACAACAGGGACCAGATAATTTTTA 2002
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 2003 TGGTGGGACGAGGATACCTGTCTCCAGATCTCAGTAAGGTACGGAGTAACTGTCCAAAAGCCATGAAGAGATTA 2076
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 2077 ATGGCAGAGTGCCTCAAAAAGAAAAGAGATGAGAGACCACTCTTTCCCCAAATTCTCGCCTCTATTGAGCTGCT 2150
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 2151 GGCCCGCTCATTGCCAAAAATTCACCGCAGTGCATCAGAACCCTCCTTGAATCGGGCTGGTTTCCAAACAGAGG 2224
Sbjct 1628 -------------------------------------------------------------------------- 1627
Query 2225 ATTTTAGTCTATATGCTTGTGCTTCTCCAAAAACACCCATCCAGGCAGGGGGATATGGTGCGTTTCCTGTCCAC 2298
Sbjct 1628 -------------------------------------------------------------------------- 1627
