Nucleotide Global Alignment

Description

Query:
TRCN0000491311
Subject:
XR_001782584.1
Aligned Length:
2438
Identities:
813
Gaps:
1494

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GAAGGAGCCCTCTCGCGGCCGCGGCAGCAGCAGCAGCGCCCGCCCCGGCTGCAGTCCGGCCGCCGCTGCCGCCG  74

Query    1  ------------------------------------ATGAGTGAGGCGGTTCGGGTACCCTCGCCCGCCACTCC  38
                                                |||||||||||||.|||||..|.||||||||...|.||
Sbjct   75  CCGCCACCGCCTCGCGCCTCAGCCGCCCGGCCAGACATGAGTGAGGCGGCTCGGGATCTCTCGCCCGGAGCGCC  148

Query   39  GCTGGTGGTGGCGGCGGCCGCGCCTGAGGAGAGGAAAGGGAAGGAGTCAGAGCGCGAGAAGCTGCCGCCCATCG  112
            ||.||.|||.||.||||||||.||.|||||||||||.|||||.||..|.|||||||||||||||||||||||||
Sbjct  149  GCCGGCGGTAGCCGCGGCCGCCCCGGAGGAGAGGAAGGGGAAAGAACCGGAGCGCGAGAAGCTGCCGCCCATCG  222

Query  113  TATCGGCGGGCGCCGGCGCGACCGCGGGTTTGGACAGAGGAGCCAAAGGCCAAATTTCCACTTTCAGCAGTTTT  186
            |..||      ||||||||..|||||||.||||||||||||.||||.|||||.||||||||.||||||||.|||
Sbjct  223  TGACG------GCCGGCGCAGCCGCGGGCTTGGACAGAGGATCCAAGGGCCAGATTTCCACCTTCAGCAGCTTT  290

Query  187  ATTTCAGCTGTTAGCCCGAAGAAAGAAGCTGCTGAAAACAGAAGTTCACCTGCACATCTTGTTTTCCCTAACAT  260
            .|.||..||||.|.||.||||||.|||||||||||.||||||||.||.|||.|.||.||||.|.||||||||||
Sbjct  291  GTCTCGACTGTCACCCAGAAGAAGGAAGCTGCTGAGAACAGAAGCTCGCCTACCCACCTTGCTCTCCCTAACAT  364

Query  261  CAAGAATGTGAGAGAACCACCACCAATTTGCCTTGATGTTAGACAAAAACAGCGTACATCTATGGATGCATCAT  334
            ||.||||||||||||.|.||||||||||||.|||||||||||||||||||||||.|..|||.||||.||.|.|.
Sbjct  365  CAGGAATGTGAGAGACCTACCACCAATTTGTCTTGATGTTAGACAAAAACAGCGCATGTCTGTGGAAGCGTTAC  438

Query  335  CATCCGAAATGAAGGCCCCAGTCCTTCCAGAACCTATTCTTCCTATCCAGCCCAAAACTGTGAAAGACTTTCAG  408
            ||||.|||.||||||.|||...|||||||||||||..||||||||.|||||||||||||||.|||||||||.||
Sbjct  439  CATCTGAAGTGAAGGTCCCGCCCCTTCCAGAACCTTCTCTTCCTAGCCAGCCCAAAACTGTAAAAGACTTTGAG  512

Query  409  GAAGATGTAGAAAAAGTTAAGTCATCAGGAGATTGGAAAGCAGTACATGATTTTTATCTAACAACGTTTGATTC  482
            ||||||.|||||||||.|.||.|..||||..|||||||..|||||||||.|||||||.|||||.|.||||||||
Sbjct  513  GAAGATTTAGAAAAAGCTGAGGCCACAGGGAATTGGAAGACAGTACATGCTTTTTATATAACAGCATTTGATTC  586

Query  483  TTTCCCAGAATTAAATGCTGCATTTAAGAAAGATGCCACTGCCTCATTTAACACCATTGAAGACTCTGGGATTA  556
            ||||.|||||.||||..||||||||||||||||||||||.|||||||||||.||.|||||.|||||||||.|||
Sbjct  587  TTTCACAGAACTAAACACTGCATTTAAGAAAGATGCCACGGCCTCATTTAATACTATTGAGGACTCTGGGCTTA  660

Query  557  ATGCTAAATTTGTGAATGCTGTGTATGATACCTTACTTAATACTCCTCAAGACGTTCAGAAGACAGTATTAAAG  630
            ||||.||.||.|||||||||||||.||||.||||||||||||||||||||||..|.||||||.|||||||.|||
Sbjct  661  ATGCCAATTTGGTGAATGCTGTGTTTGATGCCTTACTTAATACTCCTCAAGATATCCAGAAGTCAGTATTGAAG  734

Query  631  GGAATCATTAACAGCCTGTTACGAGAATGGAAAGGTCCACGAACAAAAGATGATCTTAGAGCATATTTTATACT  704
            |||||||||||||||.||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  GGAATCATTAACAGCTTGTTACAAGAATGGAAAGGTCCACGAACAAAAGATGATCTTAGAGCATATTTTATACT  808

Query  705  TTTACAGAATCCTCAGTTTAATAACACATCTACGTATGTCATCTATGCTCACTTGCTACGACAGATAGCTACCT  778
            .||||||                                                                   
Sbjct  809  GTTACAG-------------------------------------------------------------------  815

Query  779  TAGTGGAAGCTGACCATCATTTCCTAGTTCACTGGTTTAAAAAATTGTCCCAGAAGAGGTTCAAACAATTGGTA  852
                                                       |||.||||||||||..|||||.|||.|||||
Sbjct  816  -------------------------------------------ATTATCCCAGAAGAAATTCAAGCAACTGGTA  846

Query  853  GAGAGATTGCTGCAATTTATTTCTTTACGCCTGTTTCCTGCAAAGCCTGAAGAATTTCCACCTATAACAAAGTG  926
            ||||||||||||||||||.||||||||||.||||||||.|||||.|||||||||||.||.|||.||||.|||||
Sbjct  847  GAGAGATTGCTGCAATTTGTTTCTTTACGGCTGTTTCCAGCAAAACCTGAAGAATTCCCGCCTCTAACGAAGTG  920

Query  927  TTCCTGGTGGATTCCATCAGCCGCTAAAGTGTTGGCTTTACTTAATACTGCAAACAATTTAGTTCACCCTCCCC  1000
            |.||||||||||.|||||||||||||||||..|||||||.|||||.|||||.||||||||.|||||||||||||
Sbjct  921  TACCTGGTGGATCCCATCAGCCGCTAAAGTTCTGGCTTTGCTTAACACTGCCAACAATTTGGTTCACCCTCCCC  994

Query 1001  TTATTCCTTATACTGATTTCTATAATTCTACATTGGATCACATTGATCTCATGGAAGAATATCATACTTGGCAA  1074
            |..|||||||.||||||||||||||||||||..|||||||||||||||||||||||||.|              
Sbjct  995  TCGTTCCTTACACTGATTTCTATAATTCTACCCTGGATCACATTGATCTCATGGAAGAGT--------------  1054

Query 1075  AACTTTGGAAACTCTCACAGGTTTTCCTTCTGTCAGTACCCATTCGTTATTTCTGTAGCTGCAAAAAAAATCAT  1148
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1149  TATTCAGAGAGACTCAGAGCAACAGATGATAAACATCGCAAGGCAAAGTCTGGTGGATAAAGTATCTCGAAGAC  1222
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1223  AGAGACCTGATATGAATATATTATTTCTAAATATGAAAGTAAGACGGACACATCTGGTTAGCGATTCACTTGAT  1296
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1297  GAGCTAACCCGGAAAAGAGCCGATTTGAAAAAGAAGTTAAAAGTTACATTTGTAGGGGAAGCTGGTTTGGATAT  1370
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1371  GGGTGGTTTGACTAAAGAATGGTTCCTTCTTCTAATTCGCCAAATTTTTCATCCAGATTATGGCATGTTTACAT  1444
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1445  ATCACAAGGATTCACACTGCCATTGGTTTAGCAGCTTTAAATGTGATAACTATTCTGAATTCCGATTGGTTGGA  1518
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1519  ATTCTTATGGGACTAGCTGTTTATAACAGCATCACCTTGGATATTCGTTTCCCTCCCTGCTGTTACAAGAAATT  1592
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1593  ATTGAGCCCTCCCATCATTCCTAGTGATCAAAATATACCAGTAGGCATCTGCAATGTTACCGTGGACGACTTAT  1666
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1667  GTCAAATTATGCCTGAGTTGGCCCATGGATTAAGTGAACTCTTATCACATGAAGGCAATGTTGAAGAAGATTTC  1740
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1741  TATTCAACATTTCAGGTTTTTCAAGAAGAATTTGGAATAATCAAGTCCTATAATTTAAAGCCCGGTGGTGATAA  1814
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1815  AATTTCAGTTACCAATCAAAATAGAAAAGAATATGTACAGCTTTATACTGACTTCCTTCTGAACAAATCCATCT  1888
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1889  ATAAGCAGTTTGCTGCATTTTATTATGGATTTCATAGTGTGTGTGCTTCAAATGCCCTAATGCTGCTTCGTCCA  1962
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 1963  GAAGAGGTTGAAATTTTGGTCTGTGGAAGTCCTGACCTGGATATGCATGCTCTGCAGAGAAGTACTCAGTATGA  2036
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 2037  TGGCTATGCAAAAACGGACTTAACTATAAAATACTTTTGGGATGTTGTGCTTGGATTTCCTCTTGATCTTCAAA  2110
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 2111  AGAAGTTGCTACATTTTACTACAGGGAGTGACAGAGTACCTGTAGGAGGGATGGCTGATTTGAACTTTAAAATC  2184
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 2185  TCAAAGAATGAAACTTCTACTAACTGCTTACCTGTGGCCCATACCTGCTTCAATCAACTTTGCCTTCCCCCCTA  2258
                                                                                      
Sbjct 1055  --------------------------------------------------------------------------  1054

Query 2259  CAAGAGCAAAAAGGATCTGAAACAGAAATTGATCATTGGAATTTCAAATTCAGAAGGTTTTGGACTTGAG  2328
                                                                                  
Sbjct 1055  ----------------------------------------------------------------------  1054

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