Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00028
Subject:
NM_001288578.1
Aligned Length:
1122
Identities:
660
Gaps:
366

Alignment

Query    1  ATGGCGAACGAGGTTATCAAGTGCAAGGCTGCAGTTGCTTGGGAGGCTGGAAAGCCTCTCTCCATAGAGGAGAT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGAGGTGGCACCCCCAAAGGCTCATGAAGTTCGAATCAAGATCATTGCCACTGCGGTTTGCCACACCGATGCCT  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ATACCCTGAGTGGAGCTGATCCTGAGGGTTGTTTTCCAGTGATCTTGGGACATGAAGGTGCTGGAATTGTGGAA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AGTGTTGGTGAGGGAGTTACTAAGCTGAAGGCGGGTGACACTGTCATCCCACTTTACATCCCACAGTGTGGAGA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  ATGCAAATTTTGTCTAAATCCTAAAACTAACCTTTGCCAGAAGATAAGAGTCACTCAAGGGAAAGGATTAATGC  370
                                                                                  ||||
Sbjct    1  ----------------------------------------------------------------------ATGC  4

Query  371  CAGATGGTACCAGCAGATTTACTTGCAAAGGAAAGACAATTTTGCATTACATGGGAACCAGCACATTTTCTGAA  444
            |||||||.||.|||||||||||.||||||||||||.|..||||.||.|.||||||.||.|||||||||||.||.
Sbjct    5  CAGATGGGACTAGCAGATTTACCTGCAAAGGAAAGTCTGTTTTTCACTTCATGGGGACTAGCACATTTTCCGAG  78

Query  445  TACACAGTTGTGGCTGATATCTCTGTTGCTAAAATAGATCCTTTAGCACCTTTGGATAAAGTCTGCCTTCTAGG  518
            |||||||||||||||||.|||||||||||||||||.|||||||..||.|||||||||||||||||||||||.||
Sbjct   79  TACACAGTTGTGGCTGACATCTCTGTTGCTAAAATCGATCCTTCGGCCCCTTTGGATAAAGTCTGCCTTCTCGG  152

Query  519  TTGTGGCATTTCAACCGGTTATGGTGCTGCTGTGAACACTGCCAAGTTGGAGCCTGGCTCTGTTTGTGCCGTCT  592
            .|||||.||||||||.||.||.||.|||||||||||||||||||||.||||||||||.|||..|||||||||||
Sbjct  153  CTGTGGTATTTCAACTGGCTACGGGGCTGCTGTGAACACTGCCAAGGTGGAGCCTGGTTCTACTTGTGCCGTCT  226

Query  593  TTGGTCTGGGAGGAGTCGGATTGGCAGTTATCATGGGCTGTAAAGTGGCTGGTGCTTCCCGGATCATTGGTGTG  666
            ||||.|||||||||||.|||.|||||||.||||||||||||||.|||||||||||.|||||||||||||||.|.
Sbjct  227  TTGGCCTGGGAGGAGTTGGACTGGCAGTGATCATGGGCTGTAAGGTGGCTGGTGCATCCCGGATCATTGGTATC  300

Query  667  GACATCAATAAAGATAAATTTGCAAGGGCCAAAGAGTTTGGAGCCACTGAATGTATTAACCCTCAGGATTTTAG  740
            ||||||||||||||||||||.||||.|||||||||.|||||||||.||||||||||||.|||.||.||.||.||
Sbjct  301  GACATCAATAAAGATAAATTCGCAAAGGCCAAAGAATTTGGAGCCTCTGAATGTATTAGCCCCCAAGACTTCAG  374

Query  741  TAAACCCATCCAGGAAGTGCTCATTGAGATGACCGATGGAGGAGTGGACTATTCCTTTGAATGTATTGGTAATG  814
            ||||.|||||||||||||.|||.||||||||||.|||||.||.|||||.||.||||||||.||.|||||.||.|
Sbjct  375  TAAATCCATCCAGGAAGTCCTCGTTGAGATGACAGATGGGGGCGTGGATTACTCCTTTGAGTGCATTGGCAACG  448

Query  815  TGAAGGTCATGAGAGCAGCACTTGAGGCATGTCACAAGGGCTGGGGCGTCAGCGTCGTGGTTGGAGTAGCTGCT  888
            ||||||||||||||.||||.|||||||||...|||||.||||||||.|||||.||.||.||.||||||||||||
Sbjct  449  TGAAGGTCATGAGATCAGCCCTTGAGGCAGCCCACAAAGGCTGGGGTGTCAGTGTGGTAGTGGGAGTAGCTGCT  522

Query  889  TCAGGTGAAGAAATTGCCACTCGTCCATTCCAGCTGGTAACAGGTCGCACATGGAAAGGCACTGCCTTTGGAGG  962
            |||||.||||||||..||||||||||||||||||||||.|||||.|||||||||||||||||.|||||||||||
Sbjct  523  TCAGGGGAAGAAATCTCCACTCGTCCATTCCAGCTGGTGACAGGACGCACATGGAAAGGCACCGCCTTTGGAGG  596

Query  963  ATGGAAGAGTGTAGAAAGTGTCCCAAAGTTGGTGTCTGAATATATGTCCAAAAAGATAAAAGTTGATGAATTTG  1036
            ||||||||||||.||.||||||||||||.|||||||||||||||||||||||||||||||||||||.|||||||
Sbjct  597  ATGGAAGAGTGTGGAGAGTGTCCCAAAGCTGGTGTCTGAATATATGTCCAAAAAGATAAAAGTTGACGAATTTG  670

Query 1037  TGACTCACAATCTGTCTTTTGATGAAATCAACAAAGCCTTTGAACTGATGCATTCTGGAAAGAGCATTCGAACT  1110
            ||||...||||||.||.||.||..||||.|||.||||||||||.||||||||.||.|||.|.||||||||||||
Sbjct  671  TGACCGGCAATCTCTCCTTCGACCAAATTAACCAAGCCTTTGATCTGATGCACTCGGGAGACAGCATTCGAACT  744

Query 1111  GTTGTAAAGATT  1122
            |||.|||||||.
Sbjct  745  GTTCTAAAGATG  756