Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00038
- Subject:
- XM_011240280.2
- Aligned Length:
- 4596
- Identities:
- 2578
- Gaps:
- 1614
Alignment
Query 1 ATGGGACACAGTAAACAGATTCGAATTTTACTTCTGAACGAAATGGAGAAACTGGAAAAGACCCTCTTCAGACT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 TGAACAAGGGTATGAGCTACAGTTCCGATTAGGCCCAACTTTACAGGGAAAAGCAGTTACCGTGTATACAAATT 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ACCCATTTCCTGGAGAAACATTTAATAGAGAAAAATTCCGTTCTCTGGATTGGGAAAATCCAACAGAAAGAGAA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GATGATTCTGATAAATACTGTAAACTTAATCTGCAACAATCTGGTTCATTTCAGTATTATTTCCTTCAAGGAAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TGAGAAAAGTGGTGGAGGTTACATAGTTGTGGACCCCATTTTACGTGTTGGTGCTGATAATCATGTGCTACCCT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 TGGACTGTGTTACTCTTCAGACATTTTTAGCTAAGTGTTTGGGACCTTTTGATGAATGGGAAAGCAGACTTAGG 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GTTGCAAAAGAATCAGGCTACAACATGATTCATTTTACCCCATTGCAGACTCTTGGACTATCTAGGTCATGCTA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 CTCCCTTGCCAATCAGTTAGAATTAAATCCTGACTTTTCAAGACCTAATAGAAAGTATACCTGGAATGATGTTG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GACAGCTAGTGGAAAAATTAAAAAAGGAATGGAATGTTATTTGTATTACTGATGTTGTCTACAATCATACTGCT 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 GCTAATAGTAAATGGATCCAGGAACATCCAGAATGTGCCTATAATCTTGTGAATTCTCCACACTTAAAACCTGC 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 CTGGGTCTTAGACAGAGCACTTTGGCGTTTCTCCTGTGATGTTGCAGAAGGGAAATACAAAGAAAAGGGAATAC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 CTGCTTTGATTGAAAATGATCACCATATGAATTCCATCCGAAAAATAATTTGGGAGGATATTTTTCCAAAGCTT 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 AAACTCTGGGAATTTTTCCAAGTAGATGTCAACAAAGCGGTTGAGCAATTTAGAAGACTTCTTACACAAGAAAA 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 TAGGCGAGTAACCAAGTCTGATCCAAACCAACACCTTACGATTATTCAAGATCCTGAATACAGACGGTTTGGCT 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 GTACTGTAGATATGAACATTGCACTAACGACTTTCATACCACATGACAAGGGGCCAGCAGCAATTGAAGAATGC 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 TGTAATTGGTTTCATAAAAGAATGGAGGAATTAAATTCAGAGAAGCATCGACTCATTAACTATCATCAGGAACA 1184
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1185 GGCAGTTAATTGCCTTTTGGGAAATGTGTTTTATGAACGACTGGCTGGCCATGGTCCAAAACTAGGACCTGTCA 1258
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1259 CTAGAAAGCATCCTTTAGTTACCAGGTATTTTACTTTCCCATTTGAAGAGATAGACTTCTCCATGGAAGAATCT 1332
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1333 ATGATTCATCTGCCAAATAAAGCTTGTTTTCTGATGGCACACAATGGATGGGTAATGGGAGATGATCCTCTTCG 1406
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1407 AAACTTTGCTGAACCGGGTTCAGAAGTTTACCTAAGGAGAGAACTTATTTGCTGGGGAGACAGTGTTAAATTAC 1480
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1481 GCTATGGGAATAAACCAGAGGACTGTCCTTATCTCTGGGCACACATGAAAAAATACACTGAAATAACTGCAACT 1554
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1555 TATTTCCAGGGAGTACGTCTTGATAACTGCCACTCAACACCTCTTCACGTAGCTGAGTACATGTTGGATGCTGC 1628
|||.||||||||||
Sbjct 1 ------------------------------------------------------------ATGCTGGATGCTGC 14
Query 1629 TAGGAATTTGCAACCCAATTTATATGTAGTAGCTGAACTGTTCACAGGAAGTGAAGATCTGGACAATGTCTTTG 1702
||||||.||.||.||||||.|.||||||||.|||||.||||||||||||||.|||||.|||||||||.||||.|
Sbjct 15 TAGGAAATTACAGCCCAATCTTTATGTAGTGGCTGAGCTGTTCACAGGAAGCGAAGAGCTGGACAATATCTTCG 88
Query 1703 TTACTAGACTGGGCATTAGTTCCTTAATAAGAGAGGCAATGAGTGCATATAATAGTCATGAAGAGGGCAGATTA 1776
||||||||||||||||.||||||||||||||||||||||||||.||.|||||.|||||.||||||||||||.|.
Sbjct 89 TTACTAGACTGGGCATCAGTTCCTTAATAAGAGAGGCAATGAGCGCGTATAACAGTCACGAAGAGGGCAGACTG 162
Query 1777 GTTTACCGATATGGAGGAGAACCTGTTGGATCCTTTGTTCAGCCCTGTTTGAGGCCTTTAATGCCAGCTATTGC 1850
||.|||||.||.|||||.||||||||.||.|||||.||||||||||||||||||||..|.|||||.|||||.||
Sbjct 163 GTCTACCGGTACGGAGGGGAACCTGTCGGCTCCTTCGTTCAGCCCTGTTTGAGGCCGCTCATGCCTGCTATCGC 236
Query 1851 ACATGCCCTGTTTATGGATATTACGCATGATAATGAGTGTCCTATTGTGCATAGATCAGCGTATGATGCTCTTC 1924
.|||||||||||||||||.||.||.||.||||||||||||||.||||||||.||||||||.|||||||||||||
Sbjct 237 GCATGCCCTGTTTATGGACATCACCCACGATAATGAGTGTCCGATTGTGCACAGATCAGCCTATGATGCTCTTC 310
Query 1925 CAAGTACTACAATTGTTTCTATGGCATGTTGTGCTAGTGGAAGTACAAGAGGCTATGATGAATTAGTGCCTCAT 1998
|||||||.|||.|||||||.||||||||.|||||.||||||||.|||||||||||.||.||..|||||||||||
Sbjct 311 CAAGTACCACAGTTGTTTCCATGGCATGCTGTGCCAGTGGAAGCACAAGAGGCTACGACGAGCTAGTGCCTCAT 384
Query 1999 CAGATTTCAGTGGTTTCTGAAGAACGGTTTTACACTAAGTGGAATCCTGAAGCATTGCCTTCAAACACAGGTGA 2072
|||||||||||||||.|.||.||.||.||||||||||||||||||||||..||||..||..||.|.|||||.||
Sbjct 385 CAGATTTCAGTGGTTGCAGAGGAGCGATTTTACACTAAGTGGAATCCTGGGGCATCACCGGCAGATACAGGGGA 458
Query 2073 AGTTAATTTCCAAAGCGGCATTATTGCAGCCAGGTGTGCTATCAGTAAACTTCATCAGGAGCTTGGAGCCAAGG 2146
.||||||.||||.|||||.||||||||||||||.|||||.||||.||..||.|||||.||||||||||||||||
Sbjct 459 TGTTAATGTCCATAGCGGGATTATTGCAGCCAGATGTGCCATCAATAGGCTCCATCAAGAGCTTGGAGCCAAGG 532
Query 2147 GTTTTATTCAGGTGTATGTGGATCAAGTTGATGAAGACATAGTGGCAGTAACAAGACACTCACCTAGCATCCAT 2220
||||.|||||.|||||||||||||||||.|||||||||||||||||.|||||.||.|||||.||.||||||||.
Sbjct 533 GTTTCATTCAAGTGTATGTGGATCAAGTGGATGAAGACATAGTGGCTGTAACCAGGCACTCCCCGAGCATCCAC 606
Query 2221 CAGTCTGTTGTGGCTGTATCTAGAACTGCTTTCAGGAATCCCAAGACTTCATTTTACAGCAAGGAAGTGCCTCA 2294
||||||||||||||||||||.|||||||||||.|||||||||||||||||.|||||||||||.|||||||||||
Sbjct 607 CAGTCTGTTGTGGCTGTATCGAGAACTGCTTTTAGGAATCCCAAGACTTCCTTTTACAGCAAAGAAGTGCCTCA 680
Query 2295 AATGTGCATCCCTGGCAAAATTGAAGAAGTAGTTCTTGAAGCTAGAACTATTGAGAGAAACACGAAACCTTATA 2368
.||||||||||||||||||||||||||.||||||||.|||||||||||||||||.||.|||||.||||||||||
Sbjct 681 GATGTGCATCCCTGGCAAAATTGAAGAGGTAGTTCTGGAAGCTAGAACTATTGAAAGGAACACAAAACCTTATA 754
Query 2369 GGAAGGATGAGAATTCAATCAATGGAACACCAGATATCACAGTAGAAATTAGAGAACATATTCAGCTTAATGAA 2442
.|||.||.|||||.||.||||||||||..||..|.||.|||||.|||.||||||||||.||.||||||.|||||
Sbjct 755 AGAAAGACGAGAACTCGATCAATGGAATGCCGAACATGACAGTGGAACTTAGAGAACACATCCAGCTTCATGAA 828
Query 2443 AGTAAAATTGTTAAACAAGCTGGAGTTGCCACAAAAGGGCCCAATGAATATATTCAAGAAATAGAATTTGAAAA 2516
|||||||||||.|.|||||||||||||||||||||.||.|||||||||||||||||.||||||||||||||.||
Sbjct 829 AGTAAAATTGTCAGACAAGCTGGAGTTGCCACAAAGGGTCCCAATGAATATATTCAGGAAATAGAATTTGAGAA 902
Query 2517 CTTGTCTCCAGGAAGTGTTATTATATTCAGAGTTAGTCTTGATCCACATGCACAAGTCGCTGTTGGAATTCTTC 2590
|.|.|||||||||||||||||||||||||||||||||||.||||||||.||.|||||.|||||.||.|||||||
Sbjct 903 CCTATCTCCAGGAAGTGTTATTATATTCAGAGTTAGTCTCGATCCACACGCTCAAGTTGCTGTGGGGATTCTTC 976
Query 2591 GAAATCATCTGACACAATTCAGTCCTCACTTTAAATCTGGCAGCCTAGCTGTTGACAATGCAGATCCTATATTA 2664
|.||.||.|||||.||.|||||..||||||||||.||.||.|||||.|||||||||||.|||||||||||||||
Sbjct 977 GGAACCACCTGACCCAGTTCAGCTCTCACTTTAAGTCCGGAAGCCTTGCTGTTGACAACGCAGATCCTATATTA 1050
Query 2665 AAAATTCCTTTTGCTTCTCTTGCCTCCAGATTAACTTTGGCTGAGCTAAATCAGATCCTTTACCGATGTGAATC 2738
|||||.||.||.|||||..|||||||.|.|||.|||||||||||||||||.|||.|.|||||||||||||||||
Sbjct 1051 AAAATCCCCTTCGCTTCCATTGCCTCTAAATTGACTTTGGCTGAGCTAAACCAGGTACTTTACCGATGTGAATC 1124
Query 2739 AGAAGAAAAGGAAGATGGTGGAGGGTGCTATGACATACCAAACTGGTCAGCCCTTAAATATGCAGGTCTTCAAG 2812
|||||||.|.|||||.|||||.||.||||||||||||||||||||||||.|.|||||.||.|||||.|||||||
Sbjct 1125 AGAAGAACAAGAAGACGGTGGCGGTTGCTATGACATACCAAACTGGTCATCACTTAAGTACGCAGGACTTCAAG 1198
Query 2813 GTTTAATGTCTGTATTGGCAGAAATAAGACCAAAGAATGACTTGGGGCATCCTTTTTGTAATAATTTGAGATCT 2886
|.||||||||.||.|||||||||||||||||.|||||||||.||||||||||.||.|||.|.||.|||||.||.
Sbjct 1199 GATTAATGTCCGTGTTGGCAGAAATAAGACCGAAGAATGACCTGGGGCATCCATTCTGTGAAAACTTGAGGTCG 1272
Query 2887 GGAGATTGGATGATTGACTATGTCAGTAACCGGCTTATTTCACGATCAGGAACTATTGCTGAAGTTGGTAAATG 2960
|||||.||||||||.|||||.||.|||...||||||||||||.|||||||||.|||||||||.|||||||||||
Sbjct 1273 GGAGACTGGATGATCGACTACGTGAGTGGTCGGCTTATTTCAAGATCAGGAAGTATTGCTGAGGTTGGTAAATG 1346
Query 2961 GTTGCAGGCTATGTTCTTCTACCTGAAGCAGATCCCACGTTACCTTATCCCATGTTACTTTGATGCTATATTAA 3034
|.|||||||||||||||||||||||||||||||||||||.|||||.|||||.||.||||||||.||||||||.|
Sbjct 1347 GCTGCAGGCTATGTTCTTCTACCTGAAGCAGATCCCACGCTACCTCATCCCCTGCTACTTTGACGCTATATTGA 1420
Query 3035 TTGGTGCATATACCACTCTTCTGGATACAGCATGGAAGCAGATGTCAAGCTTTGTTCAGAATGGTTCAACCTTT 3108
||||||||||.||||||||.||||||..|||.|||||.|||||||||||||||||||||||.||.||.|||||.
Sbjct 1421 TTGGTGCATACACCACTCTGCTGGATGTAGCGTGGAAACAGATGTCAAGCTTTGTTCAGAACGGATCCACCTTC 1494
Query 3109 GTGAAACACCTTTCATTGGGTTCAGTTCAACTGTGTGGAGTAGGAAAATTCCCTTCCCTGCCAATTCTTTCACC 3182
|||||.|||||.|||.|||||||.||.||..||||||||||.||.||||.|||||..|||||..|.|||||.||
Sbjct 1495 GTGAAGCACCTGTCACTGGGTTCTGTCCAGATGTGTGGAGTCGGGAAATGCCCTTGTCTGCCGCTGCTTTCTCC 1568
Query 3183 TGCCCTAATGGATGTACCTTATAGGTTAAATGAGATCACAAAAGAAAAGGAGCAATGTTGTGTTTCTCTAGCTG 3256
..|.||..|||||||.||.|..||||||||||||||||||||.||.||||||||.||.||||..||..||||||
Sbjct 1569 CTCGCTCCTGGATGTGCCGTGCAGGTTAAATGAGATCACAAAGGAGAAGGAGCAGTGCTGTGCCTCCTTAGCTG 1642
Query 3257 CAGGCTTACCTCATTTTTCTTCTGGTATTTTCCGCTGCTGGGGAAGGGATACTTTTATTGCACTTAGAGGTATA 3330
|||||||||||||.||||||||.|||.||||.|||||||||||.|||||.|||||.|||||.|||.||||.||.
Sbjct 1643 CAGGCTTACCTCACTTTTCTTCCGGTCTTTTTCGCTGCTGGGGGAGGGACACTTTCATTGCCCTTCGAGGGATG 1716
Query 3331 CTGCTGATTACTGGACGCTATGTAGAAGCCAGGAATATTATTTTAGCATTTGCGGGTACCCTGAGGCATGGTCT 3404
||||||.|||||||||||||..|.|||||||||||.||.||||||||.|||||..||||||||.||||.|||||
Sbjct 1717 CTGCTGGTTACTGGACGCTACCTGGAAGCCAGGAACATCATTTTAGCGTTTGCTAGTACCCTGCGGCACGGTCT 1790
Query 3405 CATTCCTAATCTACTGGGTGAAGGAATTTATGCCAGATACAATTGTCGGGATGCTGTGTGGTGGTGGCTGCAGT 3478
|||.|||||.||.||.||.|||||.|..||||||||.|||||.||.|||||.||.|||||||||||||||||||
Sbjct 1791 CATCCCTAACCTCCTCGGCGAAGGGACATATGCCAGGTACAACTGCCGGGACGCCGTGTGGTGGTGGCTGCAGT 1864
Query 3479 GTATCCAGGATTACTGTAAAATGGTTCCAAATGGTCTAGACATTCTCAAGTGCCCAGTTTCCAGAATGTATCCT 3552
|.||.|||||.||.||.|..|..||||||||.||.||.|||||.|||||.|||||.||.|||||.||||||||.
Sbjct 1865 GCATTCAGGACTATTGCAGGACAGTTCCAAACGGCCTGGACATCCTCAAATGCCCGGTGTCCAGGATGTATCCA 1938
Query 3553 ACAGATGATTCTGCTCCTTTGCCTGCTGGCACACTGGATCAGCCATTGTTTGAAGTCATACAGGAAGCAATGCA 3626
||||||||.||.||.||.|||||||||||.||||||||.|||||.||||||||||||||.||||||||.|||||
Sbjct 1939 ACAGATGACTCCGCACCCTTGCCTGCTGGGACACTGGACCAGCCTTTGTTTGAAGTCATCCAGGAAGCTATGCA 2012
Query 3627 AAAACACATGCAGGGCATACAGTTCCGAGAAAGGAATGCTGGTCCCCAGATAGATCGAAACATGAAGGACGAAG 3700
.|..||||||||||||||.|||||||||||.|||||.||.|||||.|||||.||.|||||||||||||||||.|
Sbjct 2013 GAGGCACATGCAGGGCATCCAGTTCCGAGAGAGGAACGCCGGTCCACAGATCGACCGAAACATGAAGGACGAGG 2086
Query 3701 GTTTTAATATAACTGCAGGAGTTGATGAAGAAACAGGATTTGTTTATGGAGGAAATCGTTTCAATTGTGGCACA 3774
||||.||.||||||||.||..|||||||||||||||||||||||||||||||||||||.|||||.||||||||.
Sbjct 2087 GTTTCAACATAACTGCGGGGATTGATGAAGAAACAGGATTTGTTTATGGAGGAAATCGCTTCAACTGTGGCACG 2160
Query 3775 TGGATGGATAAAATGGGAGAAAGTGACAGAGCTAGAAACAGAGGAATCCCAGCCACACCAAGAGATGGGTCTGC 3848
||||||||||||||||||||.||||||.|||||||.||||||||.|||||||||||.|||||||||||||||||
Sbjct 2161 TGGATGGATAAAATGGGAGAGAGTGACCGAGCTAGGAACAGAGGGATCCCAGCCACTCCAAGAGATGGGTCTGC 2234
Query 3849 TGTGGAAATTGTGGGCCTGAGTAAATCTGCTGTTCGCTGGTTGCTGGAATTATCCAAAAAAAATATTTTCCCTT 3922
|||||||||.||||||.||.||||||||||||||||.||||||||||||||.||.||.||||||||.||.||||
Sbjct 2235 TGTGGAAATCGTGGGCTTGTGTAAATCTGCTGTTCGTTGGTTGCTGGAATTGTCTAAGAAAAATATCTTTCCTT 2308
Query 3923 ATCATGAAGTCACAGTAAAAAGACATGGAAAGGCTATAAAGGTCTCATATGATGAGTGGAACAGAAAAATACAA 3996
||||||||||||.||||||||||||||||||||.|.|....|||||.||.||||||||||||||||||||||||
Sbjct 2309 ATCATGAAGTCAGAGTAAAAAGACATGGAAAGGTTGTGGCAGTCTCGTACGATGAGTGGAACAGAAAAATACAA 2382
Query 3997 GACAACTTTGAAAAGCTATTTCATGTTTCCGAAGACCCTTCAGATTTAAATGAAAAGCATCCAAATCTGGTTCA 4070
.||||.||.||||||||.|||||||||||||||||||||||||||...||.||.||||||||.||.||||||||
Sbjct 2383 AACAATTTCGAAAAGCTGTTTCATGTTTCCGAAGACCCTTCAGATCCTAACGAGAAGCATCCGAACCTGGTTCA 2456
Query 4071 CAAACGTGGCATATACAAAGATAGTTATGGAGCTTCAAGTCCTTGGTGTGACTATCAGCTCAGGCCTAATTTTA 4144
||||||.|||||.|||||.||.||.|||||.||.||.|||||||||||||||||||||||||||||.||.||.|
Sbjct 2457 CAAACGCGGCATCTACAAGGACAGCTATGGTGCGTCGAGTCCTTGGTGTGACTATCAGCTCAGGCCCAACTTCA 2530
Query 4145 CCATAGCAATGGTTGTGGCCCCTGAGCTCTTTACTACAGAAAAAGCATGGAAAGCTTTGGAGATTGCAGAAAAA 4218
|||||||||||||.|||||||||||.|||||||||.|.||.||.||.|||||.||||||||.||||||||||||
Sbjct 2531 CCATAGCAATGGTCGTGGCCCCTGAACTCTTTACTGCTGAGAAGGCTTGGAAGGCTTTGGAAATTGCAGAAAAA 2604
Query 4219 AAATTGCTTGGTCCCCTTGGCATGAAAACTTTAGATCCAGATGATATGGTTTACTGTGGAATTTATGACAATGC 4292
|||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||.|||||||.|||||
Sbjct 2605 AAATTGCTTGGTCCCCTTGGCATGAAAACTTTAGACCCAGATGACATGGTTTACTGTGGAGTTTATGATAATGC 2678
Query 4293 ATTAGACAATGACAACTACAATCTTGCTAAAGGTTTCAATTATCACCAAGGACCTGAGTGGCTGTGGCCTATTG 4366
.||||||||||||||||||||.|||||||.|||.||||||||.||||||||||||||||||||||||||.||||
Sbjct 2679 CTTAGACAATGACAACTACAACCTTGCTAGAGGCTTCAATTACCACCAAGGACCTGAGTGGCTGTGGCCAATTG 2752
Query 4367 GGTATTTTCTTCGTGCAAAATTATATTTTTCCAGATTGATGGGCCCGGAGACTACTGCAAAGACTATAGTTTTG 4440
|||||||||||||||||||.||.||||||||||.|.|||||||.||.||||||.||||.||||||.||.|||||
Sbjct 2753 GGTATTTTCTTCGTGCAAAGTTGTATTTTTCCAAAATGATGGGTCCAGAGACTGCTGCGAAGACTGTATTTTTG 2826
Query 4441 GTTAAAAATGTTCTTTCCCGACATTATGTTCATCTTGAGAGATCCCCTTGGAAAGGACTTCCAGAACTGACCAA 4514
|||||||||||||||||..||||||||||||||||||||||||||||.||||||||.|||||.||.||.|||||
Sbjct 2827 GTTAAAAATGTTCTTTCTAGACATTATGTTCATCTTGAGAGATCCCCATGGAAAGGCCTTCCGGAGCTCACCAA 2900
Query 4515 TGAGAATGCCCAGTACTGTCCTTTCAGCTGTGAAACACAAGCCTGGTCAATTGCTACTATTCTTGAGACACTTT 4588
||||||.|.|||||||||.||||||||||||||.|||||.||.||||||||.|||..|.||||.||.||.||.|
Sbjct 2901 TGAGAACGGCCAGTACTGCCCTTTCAGCTGTGAGACACAGGCGTGGTCAATGGCTGTTGTTCTGGAAACCCTCT 2974
Query 4589 ATGATTTA 4596
||||||||
Sbjct 2975 ATGATTTA 2982
