Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00314
Subject:
NR_135748.1
Aligned Length:
2858
Identities:
1251
Gaps:
1607

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGAGGGGGCTACATCCCCGGCTTTAGACGCGCGAGTCTCAGGTCCCGCTAATTACCTGGCGGGTGCTGCCCAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCTGCCCTCGCGCACCTAGCGCGGTGGCAGGCGGGAAGGCGGGGCCTGGGGGAGCCCCACCCCTGGAGACTGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCTGGGGCCTCCCTCTCCTCCGCCCGCCCGCCTGCCACTAGCTCATTGCGCCTCTCCTGCAGTCTGATTGGCA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCGGCTCCCATTCCGGCTCCAGCCTCCAATCCGACCCCCATTTCGGCTGCAGCCTCGGACCTAGCTCCGGCCCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CGGTCTATCCGGTTGCATCCTCCCTCCCTGTTCCGGATCTTATCTTGCGCCAGCGCCTACTCCAGGATCCCGTA  370

Query    1  ---------------ATGGCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTT  59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCCAGACCTCAAGCCATGGCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTT  444

Query   60  GGCCGGAGCGGGGTCTCTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCCAGTGAACGACGGA  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGCCGGAGCGGGGTCTCTAGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCCAGTGAACGACGGA  518

Query  134  GGCTGTATCCCCCG------------------------------------------------------------  147
            ||||||||||||||                                                            
Sbjct  519  GGCTGTATCCCCCGAGTGTTGTGTCATGGGAGGAAAGAACTGAGCAGATCTGAAGAAACTGAGCTGGCCAGCCA  592

Query  148  --------------------------------------------------------------------------  147
                                                                                      
Sbjct  593  GAGGCAACTAGAACTATTAGGAAAGCATAGACTCTGAAAGTCCCTAAAGAGATTACCAAGGTTTACCCTCTTTC  666

Query  148  --------------------------------------------------------------------------  147
                                                                                      
Sbjct  667  TAATTCCCCCTCCTCCCGCGGAGCAAAGCCAGACATGGCCAACTGGACAGCTCCCAGGTAACTGCACTAGGTCT  740

Query  148  ---------------------------------------------AGCGCTGAGTACCCAGACCTCCGAAAGCA  176
                                                         |||||||||||||||||||||||||||||
Sbjct  741  AGGCGTCTGTGCCCTCCCTCCATGGTTACTGGGTACCCCCTCCCCAGCGCTGAGTACCCAGACCTCCGAAAGCA  814

Query  177  CAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCACGGCTCTGCGACAAGACCACACCCACTGGTT  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCACGGCTCTGCGACAAGACCACACCCACTGGTT  888

Query  251  GGACGCTAGATCAGTGTATCCAGACTGGCGTGGACAACCCTGGCCACCCCTTCATCAAGACTGTGGGCATGGTG  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GGACGCTAGATCAGTGTATCCAGACTGGCGTGGACAACCCTGGCCACCCCTTCATCAAGACTGTGGGCATGGTG  962

Query  325  GCTGGAGATGAGGAGACCTATGAGGTATTTGCTGACCTGTTTGACCCTGTGATCCAAGAGCGACACAATGGATA  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GCTGGAGATGAGGAGACCTATGAGGTATTTGCTGACCTGTTTGACCCTGTGATCCAAGAGCGACACAATGGATA  1036

Query  399  TGACCCCCGGACAATGAAGCACACCACGGATCTAGATGCCAGTAAAATCCGTTCTGGCTACTTTGATGAGAGGT  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGACCCCCGGACAATGAAGCACACCACGGATCTAGATGCCAGTAAAATCCGTTCTGGCTACTTTGATGAGAGGT  1110

Query  473  ATGTATTGTCCTCTAGAGTCAGAACTGGCCGAAGCATCCGAGGACTCAGTCTGCCTCCAGCTTGCACTCGAGCA  546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  ATGTATTGTCCTCTAGAGTCAGAACTGGCCGAAGCATCCGAGGACTCAGTCTGCCTCCAGCTTGCACTCGAGCA  1184

Query  547  GAGCGACGAGAGGTGGAACGTGTTGTGGTGGATGCACTGAGTGGCCTGAAGGGTGACCTGGCTGGACGTTACTA  620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GAGCGACGAGAGGTGGAACGTGTTGTGGTGGATGCACTGAGTGGCCTGAAGGGTGACCTGGCTGGACGTTACTA  1258

Query  621  TAGGCTCAGTGAGATGACAGAGGCTGAACAGCAGCAGCTTATTGATGACCACTTTCTGTTTGATAAGCCTGTGT  694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TAGGCTCAGTGAGATGACAGAGGCTGAACAGCAGCAGCTTATTGATGACCACTTTCTGTTTGATAAGCCTGTGT  1332

Query  695  CCCCGTTGCTGACTGCAGCAGGAATGGCTCGAGACTGGCCAGATGCTCGTGGAATTTGGCACAACAATGAGAAG  768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCCCGTTGCTGACTGCAGCAGGAATGGCTCGAGACTGGCCAGATGCTCGTGGAATTTGGCACAACAATGAGAAG  1406

Query  769  AGCTTCCTGATCTGGGTGAATGAGGAGGATCATACACGGGTGATCTCCATGGAGAAGGGTGGTAACATGAAGAG  842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  AGCTTCCTGATCTGGGTGAATGAGGAGGATCATACACGGGTGATCTCCATGGAGAAGGGTGGTAACATGAAGAG  1480

Query  843  AGTGTTTGAAAGATTCTGCCGAGGCCTCAAAG------------------------------------------  874
            ||||||||||||||||||||||||||||||||                                          
Sbjct 1481  AGTGTTTGAAAGATTCTGCCGAGGCCTCAAAGAGGTTGTTGTGGGGATTAAGTGAAATACAGGTAAAGTACTTG  1554

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1555  GTCCACAGTAAGTGCTTAATAAGTGTTAAAGTGTTAGCTGCAATATTATTCTGGATGGAAGAGTTTCCCCCCAT  1628

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1629  GTTCAGCATGTAAGATATCCCCTATGGCATGGTTCCTTCTGAACTATAAAGAGGATCCCTTTACTCATGTTGGG  1702

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1703  TTGTGGTCTTTGTGACCATCATTCTGCTAGATCCCTTGTCTCTTGAACTCTAATAGTCATCTTCATGACTACAT  1776

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1777  GGTTAAGTGAAGCCAAACGCCTTCCCCCCGCCCCCTATTCCTATGAATCTGGCTTTTCTGCTCTGTTTTCATCT  1850

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1851  TTCTCTGCATTCACACAGGTGCTCCGTTCACAGCTAACAGAATGTTATCTTACCTCTTCCTGGCAAAGCTTACA  1924

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1925  CCTTCATCTTCTGTCTGAAGGGACCCTTCTAAGCTCTAGGCTCATTAGCAAAGCAAAGATAATCGATGCATGCA  1998

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1999  GACCTCATTGAATAATCAGTCATCTCTCAGTTCAGTTTACCACCTCTGTTCATTTCCCTAGATCATCCTTAATA  2072

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 2073  CACCACTCCTTCGAGTTTTCTTCTTCCACATAAGATATTTTTTCACAATCTCATTATTATGCACATCATAATTT  2146

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 2147  TGCATCATGCATGCATGAAAACAATAACAAACCTTTTTCATTTAAAAAAAGACCAATGTCATTCATTCACAGCC  2220

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 2221  AAGTTTCTGTTCTAGACATATTTCTAGTGTTCTTGTGGGTCTAGCTAAGGGAGGGTCCAGGGTTAATGAAATAT  2294

Query  875  -----------------------------------AGGTGGAGAGACTTATCCAAGAACGTGGCTGGGAGTTCA  913
                                               |||||||||||||||||||||||||||||||||||||||
Sbjct 2295  CCCTGATTTTTCGTTAACAAAACCTTTGTGGACTCAGGTGGAGAGACTTATCCAAGAACGTGGCTGGGAGTTCA  2368

Query  914  TGTGGAATGAGCGTTTGGGATACATCTTGACCTGTCCATCTAACCTGGGCACTGGACTTCGGGCAGGAGTGCAC  987
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  TGTGGAATGAGCGTTTGGGATACATCTTGACCTGTCCATCTAACCTGGGCACTGGACTTCGGGCAGGAGTGCAC  2442

Query  988  ATCAAACTGCCCCTGCTAAGCAAAGATAGCCGCTTCCCAAAGATCCTGGAGAACCTAAGACTCCAAAAACGTGG  1061
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  ATCAAACTGCCCCTGCTAAGCAAAGATAGCCGCTTCCCAAAGATCCTGGAGAACCTAAGACTCCAAAAACGTGG  2516

Query 1062  TACTGGAGGAGTGGACACTGCTGCTACAGGCGGTGTCTTTGATATTTCTAATTTGGACCGACTAGGCAAATCAG  1135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TACTGGAGGAGTGGACACTGCTGCTACAGGCGGTGTCTTTGATATTTCTAATTTGGACCGACTAGGCAAATCAG  2590

Query 1136  AGGTGGAGCTGGTGCAACTGGTCATCGATGGAGTAAACTATTTGATTGATTGTGAACGGCGTCTGGAGAGAGGC  1209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  AGGTGGAGCTGGTGCAACTGGTCATCGATGGAGTAAACTATTTGATTGATTGTGAACGGCGTCTGGAGAGAGGC  2664

Query 1210  CAGGATATCCGCATCCCCACACCTGTCATCCACACCAAGCAT--------------------------------  1251
            ||||||||||||||||||||||||||||||||||||||||||                                
Sbjct 2665  CAGGATATCCGCATCCCCACACCTGTCATCCACACCAAGCATTAACTCCCCATCGCCAGCTGATGACTCAAGAT  2738

Query 1252  --------------------------------------------------------------------------  1251
                                                                                      
Sbjct 2739  TCCCAGGAGTTCTGCTCATTCTAATGATGGCCCATTCTACTTGCTCTGGACCTGCCCCCGCATCCCCTGCCTCC  2812

Query 1252  ----------------------------------------------  1251
                                                          
Sbjct 2813  ATCCTAGTAAAGACTCCTTGCTATGCTGCAAAAAAAAAAAAAAAAA  2858

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