Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00314
Subject:
NR_135750.1
Aligned Length:
2809
Identities:
1251
Gaps:
1558

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TTTCACGAGGAGAGAGAGAGCAGCAGAGGGGACCACGAGGAAGGCAGAGATTCCCTGACGACCTCATGCCTTTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TACACCACTCGCCTTTACTCTCTGGATTAAACAGCATTAGGGAGACAAGAGAGGAAACACATGTGGTGTCTGGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GACCTGTGCCTGCCTGTTCCAGTCCCACACCCAGTCATCTCACCACACCCTTCACCTCACTTTACCTTCTCCTC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGCACAGGAACTAGGAACTACGGAGAGAGAAGCCAAGGGAGAGGAGGAGGAGGAAACTAACGATTCCCTGCCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ACCCCCACACCCAGCACCACCAACAGGTGGGCAAGCTTGCCGAGAAAACGCAGAGGGCATCCTGTGAGCAGCAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACACATCTGAGCCTGGAAAAGACGCAGAGAAGTAAAAGATCAAAGTCTGATTGGCACCGGCTCCCATTCCGGCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCAGCCTCCAATCCGACCCCCATTTCGGCTGCAGCCTCGGACCTAGCTCCGGCCCTCGGTCTATCCGGTTGCAT  518

Query    1  -----------------------------------------------------------------------ATG  3
                                                                                   |||
Sbjct  519  CCTCCCTCCCTGTTCCGGATCTTATCTTGCGCCAGCGCCTACTCCAGGATCCCGTAGCCAGACCTCAAGCCATG  592

Query    4  GCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCTCT  77
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCTCT  666

Query   78  AGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCCAGTGAACGACGGAGGCTGTATCCCCCGAGCG  151
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCCAGTGAACGACGGAGGCTGTATCCCCCGAGCG  740

Query  152  CTGAGTACCCAGACCTCCGAAAGCACAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCACGGCTC  225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTGAGTACCCAGACCTCCGAAAGCACAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCACGGCTC  814

Query  226  TGCGACAAGACCACACCCACTGGTTGGACGCTAGATCAGTGTATCCAGACTGGCGTGGACAACCCTGGCCACCC  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGCGACAAGACCACACCCACTGGTTGGACGCTAGATCAGTGTATCCAGACTGGCGTGGACAACCCTGGCCACCC  888

Query  300  CTTCATCAAGACTGTGGGCATGGTGGCTGGAGATGAGGAGACCTATGAGGTATTTGCTGACCTGTTTGACCCTG  373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTTCATCAAGACTGTGGGCATGGTGGCTGGAGATGAGGAGACCTATGAGGTATTTGCTGACCTGTTTGACCCTG  962

Query  374  TGATCCAAGAGCGACACAATGGATATGACCCCCGGACAATGAAGCACACCACGGATCTAGATGCCAGTAAAATC  447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGATCCAAGAGCGACACAATGGATATGACCCCCGGACAATGAAGCACACCACGGATCTAGATGCCAGTAAAATC  1036

Query  448  CGTTCTGGCTACTTTGATGAGAGGTATGTATTGTCCTCTAGAGTCAGAACTGGCCGAAGCATCCGAGGACTCAG  521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CGTTCTGGCTACTTTGATGAGAGGTATGTATTGTCCTCTAGAGTCAGAACTGGCCGAAGCATCCGAGGACTCAG  1110

Query  522  TCTGCCTCCAGCTTGCACTCGAGCAGAGCGACGAGAGGTGGAACGTGTTGTGGTGGATGCACTGAGTGGCCTGA  595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TCTGCCTCCAGCTTGCACTCGAGCAGAGCGACGAGAGGTGGAACGTGTTGTGGTGGATGCACTGAGTGGCCTGA  1184

Query  596  AGGGTGACCTGGCTGGACGTTACTATAGGCTCAGTGAGATGACAGAGGCTGAACAGCAGCAGCTTATTGATGAC  669
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGGGTGACCTGGCTGGACGTTACTATAGGCTCAGTGAGATGACAGAGGCTGAACAGCAGCAGCTTATTGATGAC  1258

Query  670  CACTTTCTGTTTGATAAGCCTGTGTCCCCGTTGCTGACTGCAGCAGGAATGGCTCGAGACTGGCCAGATGCTCG  743
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CACTTTCTGTTTGATAAGCCTGTGTCCCCGTTGCTGACTGCAGCAGGAATGGCTCGAGACTGGCCAGATGCTCG  1332

Query  744  TGGAATTTGGCACAACAATGAGAAGAGCTTCCTGATCTGGGTGAATGAGGAGGATCATACACGGGTGATCTCCA  817
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGGAATTTGGCACAACAATGAGAAGAGCTTCCTGATCTGGGTGAATGAGGAGGATCATACACGGGTGATCTCCA  1406

Query  818  TGGAGAAGGGTGGTAACATGAAGAGAGTGTTTGAAAGATTCTGCCGAGGCCTCAAAG-----------------  874
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 
Sbjct 1407  TGGAGAAGGGTGGTAACATGAAGAGAGTGTTTGAAAGATTCTGCCGAGGCCTCAAAGAGGTTGTTGTGGGGATT  1480

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1481  AAGTGAAATACAGGTAAAGTACTTGGTCCACAGTAAGTGCTTAATAAGTGTTAAAGTGTTAGCTGCAATATTAT  1554

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1555  TCTGGATGGAAGAGTTTCCCCCCATGTTCAGCATGTAAGATATCCCCTATGGCATGGTTCCTTCTGAACTATAA  1628

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1629  AGAGGATCCCTTTACTCATGTTGGGTTGTGGTCTTTGTGACCATCATTCTGCTAGATCCCTTGTCTCTTGAACT  1702

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1703  CTAATAGTCATCTTCATGACTACATGGTTAAGTGAAGCCAAACGCCTTCCCCCCGCCCCCTATTCCTATGAATC  1776

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1777  TGGCTTTTCTGCTCTGTTTTCATCTTTCTCTGCATTCACACAGGTGCTCCGTTCACAGCTAACAGAATGTTATC  1850

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1851  TTACCTCTTCCTGGCAAAGCTTACACCTTCATCTTCTGTCTGAAGGGACCCTTCTAAGCTCTAGGCTCATTAGC  1924

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1925  AAAGCAAAGATAATCGATGCATGCAGACCTCATTGAATAATCAGTCATCTCTCAGTTCAGTTTACCACCTCTGT  1998

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 1999  TCATTTCCCTAGATCATCCTTAATACACCACTCCTTCGAGTTTTCTTCTTCCACATAAGATATTTTTTCACAAT  2072

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 2073  CTCATTATTATGCACATCATAATTTTGCATCATGCATGCATGAAAACAATAACAAACCTTTTTCATTTAAAAAA  2146

Query  875  --------------------------------------------------------------------------  874
                                                                                      
Sbjct 2147  AGACCAATGTCATTCATTCACAGCCAAGTTTCTGTTCTAGACATATTTCTAGTGTTCTTGTGGGTCTAGCTAAG  2220

Query  875  ------------------------------------------------------------AGGTGGAGAGACTT  888
                                                                        ||||||||||||||
Sbjct 2221  GGAGGGTCCAGGGTTAATGAAATATCCCTGATTTTTCGTTAACAAAACCTTTGTGGACTCAGGTGGAGAGACTT  2294

Query  889  ATCCAAGAACGTGGCTGGGAGTTCATGTGGAATGAGCGTTTGGGATACATCTTGACCTGTCCATCTAACCTGGG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  ATCCAAGAACGTGGCTGGGAGTTCATGTGGAATGAGCGTTTGGGATACATCTTGACCTGTCCATCTAACCTGGG  2368

Query  963  CACTGGACTTCGGGCAGGAGTGCACATCAAACTGCCCCTGCTAAGCAAAGATAGCCGCTTCCCAAAGATCCTGG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  CACTGGACTTCGGGCAGGAGTGCACATCAAACTGCCCCTGCTAAGCAAAGATAGCCGCTTCCCAAAGATCCTGG  2442

Query 1037  AGAACCTAAGACTCCAAAAACGTGGTACTGGAGGAGTGGACACTGCTGCTACAGGCGGTGTCTTTGATATTTCT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  AGAACCTAAGACTCCAAAAACGTGGTACTGGAGGAGTGGACACTGCTGCTACAGGCGGTGTCTTTGATATTTCT  2516

Query 1111  AATTTGGACCGACTAGGCAAATCAGAGGTGGAGCTGGTGCAACTGGTCATCGATGGAGTAAACTATTTGATTGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  AATTTGGACCGACTAGGCAAATCAGAGGTGGAGCTGGTGCAACTGGTCATCGATGGAGTAAACTATTTGATTGA  2590

Query 1185  TTGTGAACGGCGTCTGGAGAGAGGCCAGGATATCCGCATCCCCACACCTGTCATCCACACCAAGCAT-------  1251
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct 2591  TTGTGAACGGCGTCTGGAGAGAGGCCAGGATATCCGCATCCCCACACCTGTCATCCACACCAAGCATTAACTCC  2664

Query 1252  --------------------------------------------------------------------------  1251
                                                                                      
Sbjct 2665  CCATCGCCAGCTGATGACTCAAGATTCCCAGGAGTTCTGCTCATTCTAATGATGGCCCATTCTACTTGCTCTGG  2738

Query 1252  -----------------------------------------------------------------------  1251
                                                                                   
Sbjct 2739  ACCTGCCCCCGCATCCCCTGCCTCCATCCTAGTAAAGACTCCTTGCTATGCTGCAAAAAAAAAAAAAAAAA  2809

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