Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00340
Subject:
NR_024091.1
Aligned Length:
3544
Identities:
596
Gaps:
2944

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGGGGGGGGCGCCCTCGGAGCCGGGCGGAGGGGAGGGGGGAAAGAGGAGCGCAGGGTGAGAGTGAGCCGCAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTTCGGGAGGCGAGGGGGCGGGGGGAGCAGCGCCGAGGCCGCCGCCTCCGCCTCCGCCGCCTAGGACTAGGGGG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGGGGGACGGACAAGCCCCGATGCCGGGGGAGACGGAAGAGCCGAGACCCCCGGAGCAGCAGGACCAGGAAGGG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGAGAGGCGGCCAAGGCGGCTCCGGAGGAGCCCCAACAACGGCCCCCTGAGGCGGTCGCGGCGGCGCCTGCAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GACCACTAGCAGCCGCGTGCTGAGGGGAGGTCGGGACCGAGGCCGGGCCGCTGCGGCCGCCGCCGCCGCAGCTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TGTCCCGCCGGAGGAAGGCCGAGTATCCCCGCCGGCGGAGGAGCAGCCCCAGCGCCAGGCCTCCCGACGTCCCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GGGCAGCAGCCCCAGGCCGCGAAGTCCCCGTCTCCAGTTCAGGGCAAGAAGAGTCCGCGACTCCTATGCATAGA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AAAAGTAACAACTGATAAAGATCCCAAGGAAGAAAAAGAGGAAGAAGACGATTCTGCCCTCCCTCAGGAAGTTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCATTGCTGCATCTAGACCTAGCCGGGGCTGGCGTAGTAGTAGGACATCTGTTTCTCGCCATCGTGATACAGAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AACACCCGAAGCTCTCGGTCCAAGACCGGTTCATTGCAGCTCATTTGCAAGTCAGAACCAAATACAGACCAACT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGATTATGATGTTGGAGAAGAGCATCAGTCTCCAGGTGGCATTAGTAGTGAAGAGGAAGAGGAGGAGGAAGAAG  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AGATGTTAATCAGTGAAGAGGAGATACCATTCAAAGATGATCCAAGAGATGAGACCTACAAACCCCACTTAGAA  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AGGGAAACCCCAAAGCCACGGAGAAAATCAGGGAAGGTAAAAGAAGAGAAGGAGAAGAAGGAAATTAAAGTGGA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  AGTAGAGGTGGAGGTGAAAGAAGAGGAGAATGAAATTAGAGAGGATGAGGAACCTCCAAGGAAGAGAGGAAGAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  GACGAAAAGATGACAAAAGTCCACGTTTACCCAAAAGGAGAAAAAAGCCTCCAATCCAGTATGTCCGTTGTGAG  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  ATGGAAGGATGTGGAACTGTCCTTGCCCATCCTCGCTATTTGCAGCACCACATTAAATACCAGCATTTGCTGAA  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GAAGAAATATGTATGTCCCCATCCCTCCTGTGGACGACTCTTCAGGCTTCAGAAGCAACTTCTGCGACATGCCA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  AACATCATACAGATCAAAGGGATTATATCTGTGAATATTGTGCTCGGGCCTTCAAGAGTTCCCACAATCTGGCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  GTGCACCGGATGATTCACACTGGCGAGAAGCCATTACAATGTGAGATCTGTGGATTTACTTGTCGACAAAAGGC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ATCTCTTAATTGGCACATGAAGAAACATGATGCAGACTCCTTCTACCAGTTTTCTTGCAATATCTGTGGCAAAA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AATTTGAGAAGAAGGACAGCGTAGTGGCACACAAGGCAAAAAGCCACCCTGAGGTGCTGATTGCAGAAGCTCTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GCTGCCAATGCAGGCGCCCTCATCACCAGCACAGATATCTTGGGCACTAACCCAGAGTCCCTGACGCAGCCTTC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AGATGGTCAGGGTCTTCCTCTTCTTCCTGAGCCCTTGGGAAACTCAACCTCTGGAGAGTGCCTACTGTTAGAAG  1702

Query    1  ----ATGGCTTTC------------------------ACAGAGCATTCACCGCTGACCCCTCACCGTCGGGACC  46
                |.||.|.||                        ||.||||||||||||||||||||||||||||||||||
Sbjct 1703  CTGAAGGGATGTCAAAGTCATACTGCAGTGGGACGGAACGGAGCATTCACCGCTGACCCCTCACCGTCGGGACC  1776

Query   47  TCTGTAGCCGCTCTATCTGGCTAGCAAGGAAGATTCGTTCAGACCTGACTGCTCTTACGGAATCCTATGTGAAG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TCTGTAGCCGCTCTATCTGGCTAGCAAGGAAGATTCGTTCAGACCTGACTGCTCTTACGGAATCCTATGTGAAG  1850

Query  121  CATCAGGGCCTGAACAAGAACATCAACCTGGACTCTGCGGATGGGATGCCAGTGGCAAGCACTGATCAGTGGAG  194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CATCAGGGCCTGAACAAGAACATCAACCTGGACTCTGCGGATGGGATGCCAGTGGCAAGCACTGATCAGTGGAG  1924

Query  195  TGAGCTGACCGAGGCAGAGCGACTCCAAGAGAACCTTCAAGCTTATCGTACCTTCCATGTTTTGTTGGCCAGGC  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  TGAGCTGACCGAGGCAGAGCGACTCCAAGAGAACCTTCAAGCTTATCGTACCTTCCATGTTTTGTTGGCCAGGC  1998

Query  269  TCTTAGAAGACCAGCAGGTGCATTTTACCCCAACCGAAGGTGACTTCCATCAAGCTATACATACCCTTCTTCTC  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TCTTAGAAGACCAGCAGGTGCATTTTACCCCAACCGAAGGTGACTTCCATCAAGCTATACATACCCTTCTTCTC  2072

Query  343  CAAGTCGCTGCCTTTGCATACCAGATAGAGGAGTTAATGATACTCCTGGAATACAAGATCCCCCGCAATGAGGC  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CAAGTCGCTGCCTTTGCATACCAGATAGAGGAGTTAATGATACTCCTGGAATACAAGATCCCCCGCAATGAGGC  2146

Query  417  TGATGGGATGCCTATTAATGTTGGAGATGGTGGTCTCTTTGAGAAGAAGCTGTGGGGCCTAAAGGTGCTGCAGG  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TGATGGGATGCCTATTAATGTTGGAGATGGTGGTCTCTTTGAGAAGAAGCTGTGGGGCCTAAAGGTGCTGCAGG  2220

Query  491  AGCTTTCACAGTGGACAGTAAGGTCCATCCATGACCTTCGTTTCATTTCTTCTCATCAGACTGGGATCCCAGCA  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  AGCTTTCACAGTGGACAGTAAGGTCCATCCATGACCTTCGTTTCATTTCTTCTCATCAGACTGGGATCCCAGCA  2294

Query  565  CGTGGGAGCCATTATATTGCTAACAACAAGAAAATG--------------------------------------  600
            ||||||||||||||||||||||||||||||||||||                                      
Sbjct 2295  CGTGGGAGCCATTATATTGCTAACAACAAGAAAATGTAGCAGTTAGTCCCTTCTCTCTTCCTTGCTTTCTCTTC  2368

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 2369  TAATGGAATATGCGTAGTTCCCTGGGGCCTCGCTTTCCCATCTTAAATTTCTAAAAACAGTTAAGACAACAGGC  2442

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 2443  ATTTTCTTTCTTTTTTCTCTGACCACCTGCAGCCTGTTGAAGGACTACAGGTATTTTCATCAAGTAGCGTTGGA  2516

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 2517  GACATACACAAATGGGCATACAAGTTTAGCCTGGGGGGTGTGATTTGTGTGCGTGCTTGCATGTGCTGCAGGTG  2590

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 2591  TAAGAGAGTGGGAGCAGGGACAACGTCCTTCCACTTCAGGGTTCTAACCTTTCTAACCCACTAAGTAACCTCTA  2664

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 2665  CAGGCATTTAACTGCCTTACAGACAGAATATACATATGTTAATTCTAGTCCTGGATGACTCGGTCTGAGAAGAT  2738

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 2739  TCAATTTAAAATCAGACTCTTTAGTTGATTTAAACTCTTAGAGAATAAGAATAATAATGGCTAACTTTTATTAT  2812

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 2813  CTTCTATATTAAGGCAGTATGCCAAGGGTCTTTATGTATATTATGTACAGCGTTTACAACCTTGTGAGCAAGGT  2886

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 2887  GGTGTTACTCCCATTAGGTAGATGAGAAAACAGGCTCACAGAGATTTGGTTAAGCTCACACAGCTAACAAGTAG  2960

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 2961  CACACTGAGTTTGAACACAGATCATTCTCCTTGTAAAAGCCTATGTGCCTTTCACTTTAGAGGCTTGATCATGA  3034

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 3035  ATCACTGCACCTCTTTGTCACAGGGTGTTGGAAGATGCATCCATGTAATCTATTCCCATCGCTGGAAAACAGCT  3108

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 3109  GCTGTTAGATGTCCTCAGAAGTCAGTTGCAAATTTTAGCGTTAAAGTCAGGATTTATTGTTCATACTTGGCGGT  3182

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 3183  GAGGAGGGCAGCTGGAGATCTTAAGATTCCATTTTGGAAAATGATTAGGCCCGCCAAACTTCTGAACTTTGGAA  3256

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 3257  GCTGGGGATGTTTAGTAATACAGCCTGGTTTTTAAGTACTCACTAAAAGTTCTCAAATATTGGGTTGGGCACGG  3330

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 3331  CTTATACCAGGTTACCTCACTTTTAATTAGTGATGCAGGCAGTGTAACCCAAGCATTTGTGGACAATGAGTGGA  3404

Query  601  --------------------------------------------------------------------------  600
                                                                                      
Sbjct 3405  ATACTAAAGTTAAAAAGTCAAACTTTCACCTCAGATTTTCTGGACTTAGTCATGAGGAGAGGGTGAGGCCCACT  3478

Query  601  ------------------------------------------------------------------  600
                                                                              
Sbjct 3479  CTGTTCCTACTGGAGATACCAGAGACTCTGAAACTATAGAATAAAGCCTCTGTGCTGCACAACAAA  3544

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