Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00361
- Subject:
- NR_045770.2
- Aligned Length:
- 4361
- Identities:
- 1400
- Gaps:
- 2961
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCAGTCCGATCTCGCGAGAGAGGACGGAAGCCTGTGGGAGCCCGTGGCCTTTAAAGTGCCGTTCAGCCTTTTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCCAGGGGTGCTTTGTAAACACGGCTGTGCTCAGGGCTCGCGGGTGACCGAAAGGATCATGAACTAGTGACCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAAAGGGTACTAGATGGAAACTTGAGAAAGGACTGCTTATTGATAACAGCTAAGGTATTCCTGGAAGCAGAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATAAAGCTCATGGCCCACCAGCTAGAAAGATTTCCTGAAGAGGTAGTCTGATTGGCTTAACTCGTATTCTTG 296
Query 1 -----------------------------------ATGAAATTCAAGTTACATGTGAATTCTGCCAGGCAATAC 39
|||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCATGAGAAAAAGAATGTGATAAGTTATTCAACTTATGAAATTCAAGTTACATGTGAATTCTGCCAGGCAATAC 370
Query 40 AAGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGTACTGCGCCTGGATGTGGCCAGCGTTTTACCAA 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAGGACCTGTGGAATATGAGTGATGACAAACCCTTTCTATGTACTGCGCCTGGATGTGGCCAGCGTTTTACCAA 444
Query 114 CGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTG 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CGAGGATCATTTGGCTGTCCATAAACATAAACATGAGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTG 518
Query 188 TCATTGTGGCTGATCAGACCCCAACACCAACAAGATTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAG 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCATTGTGGCTGATCAGACCCCAACACCAACAAGATTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAG 592
Query 262 TTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGCTTCAGAAGATGACATTAAAAAAATGCCTCTAGATTTATC 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGCTTCAGAAGATGACATTAAAAAAATGCCTCTAGATTTATC 666
Query 336 CCCTCTTGCAACACCTATCATAAGAAGCAAAATTGAGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTC 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCCTCTTGCAACACCTATCATAAGAAGCAAAATTGAGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTC 740
Query 410 CTTTACCTCACCCAGAGTCTACTACCAGTGATGAGAAGGAAGTACCATTGGCACAAACTGCACAGCCCACATCA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTTTACCTCACCCAGAGTCTACTACCAGTGATGAGAAGGAAGTACCATTGGCACAAACTGCACAGCCCACATCA 814
Query 484 GCTATTGTTCGTCCAGCATCATTACAGGTTCCCAATGTGCTGCTTACAAGTTCTGACTCAAGTGTAATTATTCA 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCTATTGTTCGTCCAGCATCATTACAGGTTCCCAATGTGCTGCTTACAAGTTCTGACTCAAGTGTAATTATTCA 888
Query 558 GCAGGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCATCCTCTAACAGGCCAATTGTCCCTG 631
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCAGGCAGTACCTTCACCAACCTCAAGTACTGTAATCACCCAGGCACCATCCTCTAACAGGCCAATTGT----- 957
Query 632 TACCAGGCCCATTTCCTCTTCTGTTACATCTTCCTAATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATT 705
Sbjct 958 -------------------------------------------------------------------------- 957
Query 706 ACAAGTTCTAATGTGCATGTTCCAGCTGCAGTCCCACTCGTTCGACCAGTCACCATGGTGCCTAGTGTTCCAGG 779
||||||||||||||||||||||||||||||||||||||
Sbjct 958 ------------------------------------CTCGTTCGACCAGTCACCATGGTGCCTAGTGTTCCAGG 995
Query 780 AATCCCAGGTCCTTCCTCTCCCCAACCAGTACAGTCAGAAGCAAAAATGAGATTAAAAGCTGCTTTGACCCAGC 853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 AATCCCAGGTCCTTCCTCTCCCCAACCAGTACAGTCAGAAGCAAAAATGAGATTAAAAGCTGCTTTGACCCAGC 1069
Query 854 AACATCCTCCAGTTACCAATGGTGATACTGTCAAAGGTCATGGTAGCGGATTGGTTAGGACTCAGTCAGAGGAA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 AACATCCTCCAGTTACCAATGGTGATACTGTCAAAGGTCATGGTAGCGGATTGGTTAGGACTCAGTCAGAGGAA 1143
Query 928 TCTCGACCGCAGTCATTACAACAGCCAGCCACATCCACTACAGAAACTCCGGCTTCTCCAGCTCACACAACTCC 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TCTCGACCGCAGTCATTACAACAGCCAGCCACATCCACTACAGAAACTCCGGCTTCTCCAGCTCACACAACTCC 1217
Query 1002 ACAGACCCAAAGTACAAGTGGTCGTCGGAGAAGAGCAGCTAACGAAGATCCTGATGAAAAAAGGAGAAAGTTTT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 ACAGACCCAAAGTACAAGTGGTCGTCGGAGAAGAGCAGCTAACGAAGATCCTGATGAAAAAAGGAGAAAGTTTT 1291
Query 1076 TAGAGCGAAATAGAGCAGCAGCTTCAAGATGCCGACAAAAAAGGAAAGTCTGGGTTCAGTCTTTAGAGAAGAAA 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 TAGAGCGAAATAGAGCAGCAGCTTCAAGATGCCGACAAAAAAGGAAAGTCTGGGTTCAGTCTTTAGAGAAGAAA 1365
Query 1150 GCTGAAGACTTGAGTTCATTAAATGGTCAGCTG----------------------------------------- 1182
|||||||||||||||||||||||||||||||||
Sbjct 1366 GCTGAAGACTTGAGTTCATTAAATGGTCAGCTGCAGTGAATATATTGCTCGTGAAAGGTGCCAGATTGACAGCT 1439
Query 1183 ---------------------------------CAGAGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCT 1223
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 TTGGAAACTGAAGGACTCTAATTATCCACAGACCAGAGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCT 1513
Query 1224 GAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGGCTATCATA------ 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 GAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGGCTATCATACAAATA 1587
Query 1292 -------------------------------------------------------------------------- 1291
Sbjct 1588 TTTCTTCAGCTCTATTCCATAAGGCAGTGGGCACCCAGATGTTTCCATATGCATGGTTGTGCCTTCTTTTGACC 1661
Query 1292 --------CTGCTGATAAAGATGATAGTTCAGAAGACATTTCAGTGCCGAGTAGTCCACATACAGAAGCTATAC 1357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 TATTGCAGCTGCTGATAAAGATGATAGTTCAGAAGACATTTCAGTGCCGAGTAGTCCACATACAGAAGCTATAC 1735
Query 1358 AGCATAGTTCGGTCAGCACATCCAATGGAGTCAGTTCAACCTCCAAGGCAGAAGCTGTAGCCACTTCAGTCCTC 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 AGCATAGTTCGGTCAGCACATCCAATGGAGTCAGTTCAACCTCCAAGGCAGAAGCTGTAGCCACTTCAGTCCTC 1809
Query 1432 ACCCAGATGGCGGACCAGAGTACAGAGCCTGCTCTTTCACAGATCGTTATGGCTCCTTCCTCCCAGTCACAGCC 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1810 ACCCAGATGGCGGACCAGAGTACAGAGCCTGCTCTTTCACAGATCGTTATGGCTCCTTCCTCCCAGTCACAGCC 1883
Query 1506 CTCAGGAAGT---------------------------------------------------------------- 1515
||||||||||
Sbjct 1884 CTCAGGAAGTTGATTAAAAACCTGCAGTACAACAGTTTTAGATACTCATTAGTGACTTCAAAGGGAAATCAAGG 1957
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1958 AAAGACCAGTTTCCATTTATGCGAAATCTGTGGTTGTAAATTTTTTTTTTTTACTTGAAATTAAATTTGGCTCT 2031
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2032 AAAGTTGGTGTAGCAGCAGTTGATCAGACTGAAAAACGGTTTTTAGTCTCTGGAAAAAGACTGATTTTGCTTTT 2105
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2106 TTTATAAATATTATTAGATTTATTAATTTTTCTGTGCTCAATGTGTAAATTGTATTATAATTCATTGTGATTTA 2179
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2180 TTTCACTTTTAATTTGCTGGTGTTTTAATAAATGGGGGTGTTACTGAATCTTTCTTCCCACTTCCATTTCTTTT 2253
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2254 GACCACCCCTTAACCCTCAACTGTGACGGTAGTAGTATTATCATTTATACCAAAGTTTTGCATAGTCCCTGTTG 2327
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2328 ACTTTGTAATGTTAACGGAGTCATAAAAGCACTAGGCAAGAGAAAGATAGAAATTTGCTTTTAATCTTTTTGCC 2401
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2402 TTTTATTTTGCACATTATGCAAAAGGAAAAACATTAAAGAACACTTTTTTTTAAGTGAGTGAAAACATGGTAAA 2475
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2476 GACATACAGTGCTTTTATGCACATTGTTAAGCTAAATCAAGGTCATTTATAATCATTTTCCTTTTTTATTTAAG 2549
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2550 ATTTTAAGTAAACAAATTTTAGAATTTTCAGCATTTCAAAAATGATTTTATTTTTCAAGTCTTAAATTCAATAT 2623
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2624 TTTACACCTATGTTTTGAGGCTAAAAATATGAAATTATATAATGTATGATACAGGGTTATCAAATATCTAATAA 2697
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2698 TTTTTGAAATTAGCTCTTGTTTTTGGTTTTTTTGTTGTTGTTTTTACAGATTTCAGGTTACAAACTGCAAAGTT 2771
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2772 TATGCATAATTAAGTATGGTATGGTTGCCAGAAAAGCCTAAAATTACTACTTAGAAAATTTAAGACTGTTTACC 2845
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2846 CCCATTGTCTTGTACTTGCGAGCTAACTTGTACTATTCTTGTGAAAGCACTGTCATCTTTTAGTAGCAAATTTT 2919
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2920 GATAATGTTTCTCGTGGAAAAAAAAATCAGTATCTATCTTTAGAACAATGTAATTATAATGTGGGAAGTGTGCA 2993
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2994 TGAATGAGAGAGAGTGTGTGTGTATCTGTGTGTGTGTGCGCGTGTGTGTGTGTCTTTTAATAGTTTATGCCAGC 3067
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3068 AATCTTTGCTTGAATGTTTAACGATGCCTTCAGTGTGATGCTGGCCAATAGATGATTGCAGTTTAAAATGTCAT 3141
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3142 TATTGTGCAGGCTTGGATAACTAACATTCCATGATGTAGCTTGTTTCTGATGAGATGATTGTAGGTACATTTTT 3215
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3216 CTCATTATCCAATCATCTGTGGGATACTTAGTTTTCTAATGTGCCATTATCTATTTTTATTCTGCAGTTATGTT 3289
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3290 CAAAATACAGTACATATTTTAAAATAGAATAAATTGTTAAACATAAAATTTTAAAAGTAGTAGATGTGCGTAAG 3363
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3364 AAAACTTTGTAAAATAGTTATGAGTCCTACCCAGTAGCAACTTCTGGCATTCAAGCAGGATTCCACTATGTAAA 3437
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3438 TATCTGTAATGCATTTATAATAAGTTGTGTAGTTTGTCCTGCATCCATACTACACTATTTGCTAAAGTCTCAGT 3511
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3512 GCCATCTCCTAATGAGACTGACATTTTAAAAGTCTGTATGGAATATCCTTGATAATTCAAGGAAATATCCCTCC 3585
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3586 TGCCTAAGTTCCAAACTGGGAAACATTCAAATTATATAAATGACATTTCAGGACTTTAAGTATGAAGATAATGG 3659
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3660 GAATTTTATTGTTTTGCTTTTTAAAATGAGAGCATTTTTATTTGATAATTTTTTTTAAATTTTTAATTTTTAAC 3733
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3734 TAATTTCATTATTTTAAAGTAATCAGTTTTTCAAATCATGATTTTGATATCATTATTCTAAGGAGTTATCTCAA 3807
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3808 AGGCACAAAATATGAATTCTGCAAGAAGGCTATTTTTTATTGTAGTTTGAATGGGTTAGGAAAAGCCTCAATTT 3881
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3882 TTCACTCTTAAGTCCTTCAGTACATTTTTCTTTCATCTTATTACTTATGCAAGTTAAGGTTCTTTGGTAACAGA 3955
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3956 ATTCTTGCAACTGTAAAATAAAACTACATAGATGTAAGAAGTCATGTAAACGGTTAACAAGCTTACCAAGGTTA 4029
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 4030 GCAAAACTTTCATTGTAAATCAGTCTGTACTGAGCAAATAAAAATCATTATTAGTTGTATAAACACAAATTCCA 4103
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 4104 TTTTGACTTTCAGGATGTCATACTACTTCTGTACCTAGCATTTTCAGTCCTTATATTTGCAATGTTACACAAAC 4177
Query 1516 --------------------------------------------------------------------- 1515
Sbjct 4178 TGTACTATTTTCTTTTATGTGCAGTTTGCATGAGTAAACCATCAGAGAATAAATTCTATCTTTAAATTA 4246
