Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00361
Subject:
NR_045773.2
Aligned Length:
4238
Identities:
1418
Gaps:
2820

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCAGTCCGATCTCGCGAGAGAGGACGGAAGCCTGTGGGAGCCCGTGGCCTTTAAAGTGCCGTTCAGCCTTTTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCCAGGGGTGCTTTGTAAACACGGCTGTGCTCAGGGCTCGCGGGTGACCGAAAGGATCATGAACTAGTGACCT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGAAAGGGTACTAGATGGAAACTTGAGAAAGGACTGCTTATTGATAACAGCTAAGGTATTCCTGGAAGCAGAGT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AAATAAAGCTCATGGCCCACCAGCTAGAAAGTATTCTTGCCATGAGAAAAAGAATGTGATAAGTTATTCAACTT  296

Query    1  ATGAAATTCAAGTTACATGTGAATTCTGCCAGGCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCCTT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATGAAATTCAAGTTACATGTGAATTCTGCCAGGCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCCTT  370

Query   75  TCTATGTACTGCGCCTGGATGTGGCCAGCGTTTTACCAACGAGGATCATTTGGCTGTCCATAAACATAAACATG  148
            |||||||||||||||||||||||||||                                               
Sbjct  371  TCTATGTACTGCGCCTGGATGTGGCCA-----------------------------------------------  397

Query  149  AGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTGTCATTGTGGCTGATCAGACCCCAACACCAACAAGA  222
                                                              ||||||||||||||||||||||||
Sbjct  398  --------------------------------------------------GATCAGACCCCAACACCAACAAGA  421

Query  223  TTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGC  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  422  TTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGC  495

Query  297  TTCAGAAGATGACATTAAAAAAATGCCTCTAGATTTATCCCCTCTTGCAACACCTATCATAAGAAGCAAAATTG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  496  TTCAGAAGATGACATTAAAAAAATGCCTCTAGATTTATCCCCTCTTGCAACACCTATCATAAGAAGCAAAATTG  569

Query  371  AGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTCCTTTACCTCACCCAGAGTCTACTACCAGTGATGAG  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  570  AGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTCCTTTACCTCACCCAGAGTCTACTACCAGTGATGAG  643

Query  445  AAGGAAGTACCATTGGCACAAACTGCACAGCCCACATCAGCTATTGTTCGTCCAGCATCATTACAGGTTCCCAA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  644  AAGGAAGTACCATTGGCACAAACTGCACAGCCCACATCAGCTATTGTTCGTCCAGCATCATTACAGGTTCCCAA  717

Query  519  TGTGCTGCTTACAAGTTCTGACTCAAGTGTAATTATTCAGCAGGCAGTACCTTCACCAACCTCAAGTACTGTAA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  718  TGTGCTGCTTACAAGTTCTGACTCAAGTGTAATTATTCAGCAGGCAGTACCTTCACCAACCTCAAGTACTGTAA  791

Query  593  TCACCCAGGCACCATCCTCTAACAGGCCAATTGTCCCTGTACCAGGCCCATTTCCTCTTCTGTTACATCTTCCT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  792  TCACCCAGGCACCATCCTCTAACAGGCCAATTGTCCCTGTACCAGGCCCATTTCCTCTTCTGTTACATCTTCCT  865

Query  667  AATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATTACAAGTTCTAATGTGCATGTTCCAGCTGCAGTCCC  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  866  AATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATTACAAGTTCTAATGTGCATGTTCCAGCTGCAGTCCC  939

Query  741  ACTCGTTCGACCAGTCACCATGGTGCCTAGTGTTCCAGGAATCCCAGGTCCTTCCTCTCCCCAACCAGTACAGT  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  940  ACTCGTTCGACCAGTCACCATGGTGCCTAGTGTTCCAGGAATCCCAGGTCCTTCCTCTCCCCAACCAGTACAGT  1013

Query  815  CAGAAGCAAAAATGAGATTAAAAGCTGCTTTGACCCAGCAACATCCTCCAGTTACCAATGGTGATACTGTCAAA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014  CAGAAGCAAAAATGAGATTAAAAGCTGCTTTGACCCAGCAACATCCTCCAGTTACCAATGGTGATACTGTCAAA  1087

Query  889  GGTCATGGTAGCGGATTGGTTAGGACTCAGTCAGAGGAATCTCGACCGCAGTCATTACAACAGCCAGCCACATC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088  GGTCATGGTAGCGGATTGGTTAGGACTCAGTCAGAGGAATCTCGACCGCAGTCATTACAACAGCCAGCCACATC  1161

Query  963  CACTACAGAAACTCCGGCTTCTCCAGCTCACACAACTCCACAGACCCAAAGTACAAGTGGTCGTCGGAGAAGAG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162  CACTACAGAAACTCCGGCTTCTCCAGCTCACACAACTCCACAGACCCAAAGTACAAGTGGTCGTCGGAGAAGAG  1235

Query 1037  CAGCTAACGAAGATCCTGATGAAAAAAGGAGAAAGTTTTTAGAGCGAAATAGAGCAGCAGCTTCAAGATGCCGA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236  CAGCTAACGAAGATCCTGATGAAAAAAGGAGAAAGTTTTTAGAGCGAAATAGAGCAGCAGCTTCAAGATGCCGA  1309

Query 1111  CAAAAAAGGAAAGTCTGGGTTCAGTCTTTAGAGAAGAAAGCTGAAGACTTGAGTTCATTAAATGGTCAGCTG--  1182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct 1310  CAAAAAAGGAAAGTCTGGGTTCAGTCTTTAGAGAAGAAAGCTGAAGACTTGAGTTCATTAAATGGTCAGCTGCA  1383

Query 1183  ------------------------------------------------------------------------CA  1184
                                                                                    ||
Sbjct 1384  GTGAATATATTGCTCGTGAAAGGTGCCAGATTGACAGCTTTGGAAACTGAAGGACTCTAATTATCCACAGACCA  1457

Query 1185  GAGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458  GAGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTG  1531

Query 1259  TAACCGCCATGCAGAAGAAATCTGGCTATCATACTGCTGATAAAGATGATAGTTCAGAAGACATTTCAGTGCCG  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532  TAACCGCCATGCAGAAGAAATCTGGCTATCATACTGCTGATAAAGATGATAGTTCAGAAGACATTTCAGTGCCG  1605

Query 1333  AGTAGTCCACATACAGAAGCTATACAGCATAGTTCGGTCAGCACATCCAATGGAGTCAGTTCAACCTCCAAGGC  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606  AGTAGTCCACATACAGAAGCTATACAGCATAGTTCGGTCAGCACATCCAATGGAGTCAGTTCAACCTCCAAGGC  1679

Query 1407  AGAAGCTGTAGCCACTTCAGTCCTCACCCAGATGGCGGACCAGAGTACAGAGCCTGCTCTTTCACAGATCGTTA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680  AGAAGCTGTAGCCACTTCAGTCCTCACCCAGATGGCGGACCAGAGTACAGAGCCTGCTCTTTCACAGATCGTTA  1753

Query 1481  TGGCTCCTTCCTCCCAGTCACAGCCCTCAGGAAGT---------------------------------------  1515
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 1754  TGGCTCCTTCCTCCCAGTCACAGCCCTCAGGAAGTTGATTAAAAACCTGCAGTACAACAGTTTTAGATACTCAT  1827

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1828  TAGTGACTTCAAAGGGAAATCAAGGAAAGACCAGTTTCCATTTATGCGAAATCTGTGGTTGTAAATTTTTTTTT  1901

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1902  TTTACTTGAAATTAAATTTGGCTCTAAAGTTGGTGTAGCAGCAGTTGATCAGACTGAAAAACGGTTTTTAGTCT  1975

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 1976  CTGGAAAAAGACTGATTTTGCTTTTTTTATAAATATTATTAGATTTATTAATTTTTCTGTGCTCAATGTGTAAA  2049

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2050  TTGTATTATAATTCATTGTGATTTATTTCACTTTTAATTTGCTGGTGTTTTAATAAATGGGGGTGTTACTGAAT  2123

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2124  CTTTCTTCCCACTTCCATTTCTTTTGACCACCCCTTAACCCTCAACTGTGACGGTAGTAGTATTATCATTTATA  2197

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2198  CCAAAGTTTTGCATAGTCCCTGTTGACTTTGTAATGTTAACGGAGTCATAAAAGCACTAGGCAAGAGAAAGATA  2271

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2272  GAAATTTGCTTTTAATCTTTTTGCCTTTTATTTTGCACATTATGCAAAAGGAAAAACATTAAAGAACACTTTTT  2345

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2346  TTTAAGTGAGTGAAAACATGGTAAAGACATACAGTGCTTTTATGCACATTGTTAAGCTAAATCAAGGTCATTTA  2419

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2420  TAATCATTTTCCTTTTTTATTTAAGATTTTAAGTAAACAAATTTTAGAATTTTCAGCATTTCAAAAATGATTTT  2493

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2494  ATTTTTCAAGTCTTAAATTCAATATTTTACACCTATGTTTTGAGGCTAAAAATATGAAATTATATAATGTATGA  2567

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2568  TACAGGGTTATCAAATATCTAATAATTTTTGAAATTAGCTCTTGTTTTTGGTTTTTTTGTTGTTGTTTTTACAG  2641

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2642  ATTTCAGGTTACAAACTGCAAAGTTTATGCATAATTAAGTATGGTATGGTTGCCAGAAAAGCCTAAAATTACTA  2715

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2716  CTTAGAAAATTTAAGACTGTTTACCCCCATTGTCTTGTACTTGCGAGCTAACTTGTACTATTCTTGTGAAAGCA  2789

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2790  CTGTCATCTTTTAGTAGCAAATTTTGATAATGTTTCTCGTGGAAAAAAAAATCAGTATCTATCTTTAGAACAAT  2863

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2864  GTAATTATAATGTGGGAAGTGTGCATGAATGAGAGAGAGTGTGTGTGTATCTGTGTGTGTGTGCGCGTGTGTGT  2937

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 2938  GTGTCTTTTAATAGTTTATGCCAGCAATCTTTGCTTGAATGTTTAACGATGCCTTCAGTGTGATGCTGGCCAAT  3011

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3012  AGATGATTGCAGTTTAAAATGTCATTATTGTGCAGGCTTGGATAACTAACATTCCATGATGTAGCTTGTTTCTG  3085

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3086  ATGAGATGATTGTAGGTACATTTTTCTCATTATCCAATCATCTGTGGGATACTTAGTTTTCTAATGTGCCATTA  3159

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3160  TCTATTTTTATTCTGCAGTTATGTTCAAAATACAGTACATATTTTAAAATAGAATAAATTGTTAAACATAAAAT  3233

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3234  TTTAAAAGTAGTAGATGTGCGTAAGAAAACTTTGTAAAATAGTTATGAGTCCTACCCAGTAGCAACTTCTGGCA  3307

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3308  TTCAAGCAGGATTCCACTATGTAAATATCTGTAATGCATTTATAATAAGTTGTGTAGTTTGTCCTGCATCCATA  3381

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3382  CTACACTATTTGCTAAAGTCTCAGTGCCATCTCCTAATGAGACTGACATTTTAAAAGTCTGTATGGAATATCCT  3455

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3456  TGATAATTCAAGGAAATATCCCTCCTGCCTAAGTTCCAAACTGGGAAACATTCAAATTATATAAATGACATTTC  3529

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3530  AGGACTTTAAGTATGAAGATAATGGGAATTTTATTGTTTTGCTTTTTAAAATGAGAGCATTTTTATTTGATAAT  3603

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3604  TTTTTTTAAATTTTTAATTTTTAACTAATTTCATTATTTTAAAGTAATCAGTTTTTCAAATCATGATTTTGATA  3677

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3678  TCATTATTCTAAGGAGTTATCTCAAAGGCACAAAATATGAATTCTGCAAGAAGGCTATTTTTTATTGTAGTTTG  3751

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3752  AATGGGTTAGGAAAAGCCTCAATTTTTCACTCTTAAGTCCTTCAGTACATTTTTCTTTCATCTTATTACTTATG  3825

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3826  CAAGTTAAGGTTCTTTGGTAACAGAATTCTTGCAACTGTAAAATAAAACTACATAGATGTAAGAAGTCATGTAA  3899

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3900  ACGGTTAACAAGCTTACCAAGGTTAGCAAAACTTTCATTGTAAATCAGTCTGTACTGAGCAAATAAAAATCATT  3973

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 3974  ATTAGTTGTATAAACACAAATTCCATTTTGACTTTCAGGATGTCATACTACTTCTGTACCTAGCATTTTCAGTC  4047

Query 1516  --------------------------------------------------------------------------  1515
                                                                                      
Sbjct 4048  CTTATATTTGCAATGTTACACAAACTGTACTATTTTCTTTTATGTGCAGTTTGCATGAGTAAACCATCAGAGAA  4121

Query 1516  --------------------  1515
                                
Sbjct 4122  TAAATTCTATCTTTAAATTA  4141

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