Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00361
- Subject:
- NR_045773.2
- Aligned Length:
- 4238
- Identities:
- 1418
- Gaps:
- 2820
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTCAGTCCGATCTCGCGAGAGAGGACGGAAGCCTGTGGGAGCCCGTGGCCTTTAAAGTGCCGTTCAGCCTTTTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCCAGGGGTGCTTTGTAAACACGGCTGTGCTCAGGGCTCGCGGGTGACCGAAAGGATCATGAACTAGTGACCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAAAGGGTACTAGATGGAAACTTGAGAAAGGACTGCTTATTGATAACAGCTAAGGTATTCCTGGAAGCAGAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATAAAGCTCATGGCCCACCAGCTAGAAAGTATTCTTGCCATGAGAAAAAGAATGTGATAAGTTATTCAACTT 296
Query 1 ATGAAATTCAAGTTACATGTGAATTCTGCCAGGCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCCTT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATGAAATTCAAGTTACATGTGAATTCTGCCAGGCAATACAAGGACCTGTGGAATATGAGTGATGACAAACCCTT 370
Query 75 TCTATGTACTGCGCCTGGATGTGGCCAGCGTTTTACCAACGAGGATCATTTGGCTGTCCATAAACATAAACATG 148
|||||||||||||||||||||||||||
Sbjct 371 TCTATGTACTGCGCCTGGATGTGGCCA----------------------------------------------- 397
Query 149 AGATGACACTGAAATTTGGTCCAGCACGTAATGACAGTGTCATTGTGGCTGATCAGACCCCAACACCAACAAGA 222
||||||||||||||||||||||||
Sbjct 398 --------------------------------------------------GATCAGACCCCAACACCAACAAGA 421
Query 223 TTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TTCTTGAAAAACTGTGAAGAAGTGGGTTTGTTTAATGAGTTGGCGAGTCCATTTGAGAATGAATTCAAGAAAGC 495
Query 297 TTCAGAAGATGACATTAAAAAAATGCCTCTAGATTTATCCCCTCTTGCAACACCTATCATAAGAAGCAAAATTG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 TTCAGAAGATGACATTAAAAAAATGCCTCTAGATTTATCCCCTCTTGCAACACCTATCATAAGAAGCAAAATTG 569
Query 371 AGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTCCTTTACCTCACCCAGAGTCTACTACCAGTGATGAG 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 AGGAGCCTTCTGTTGTAGAAACAACTCACCAGGATAGTCCTTTACCTCACCCAGAGTCTACTACCAGTGATGAG 643
Query 445 AAGGAAGTACCATTGGCACAAACTGCACAGCCCACATCAGCTATTGTTCGTCCAGCATCATTACAGGTTCCCAA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AAGGAAGTACCATTGGCACAAACTGCACAGCCCACATCAGCTATTGTTCGTCCAGCATCATTACAGGTTCCCAA 717
Query 519 TGTGCTGCTTACAAGTTCTGACTCAAGTGTAATTATTCAGCAGGCAGTACCTTCACCAACCTCAAGTACTGTAA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TGTGCTGCTTACAAGTTCTGACTCAAGTGTAATTATTCAGCAGGCAGTACCTTCACCAACCTCAAGTACTGTAA 791
Query 593 TCACCCAGGCACCATCCTCTAACAGGCCAATTGTCCCTGTACCAGGCCCATTTCCTCTTCTGTTACATCTTCCT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TCACCCAGGCACCATCCTCTAACAGGCCAATTGTCCCTGTACCAGGCCCATTTCCTCTTCTGTTACATCTTCCT 865
Query 667 AATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATTACAAGTTCTAATGTGCATGTTCCAGCTGCAGTCCC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 AATGGACAAACCATGCCTGTTGCTATTCCTGCATCAATTACAAGTTCTAATGTGCATGTTCCAGCTGCAGTCCC 939
Query 741 ACTCGTTCGACCAGTCACCATGGTGCCTAGTGTTCCAGGAATCCCAGGTCCTTCCTCTCCCCAACCAGTACAGT 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 ACTCGTTCGACCAGTCACCATGGTGCCTAGTGTTCCAGGAATCCCAGGTCCTTCCTCTCCCCAACCAGTACAGT 1013
Query 815 CAGAAGCAAAAATGAGATTAAAAGCTGCTTTGACCCAGCAACATCCTCCAGTTACCAATGGTGATACTGTCAAA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CAGAAGCAAAAATGAGATTAAAAGCTGCTTTGACCCAGCAACATCCTCCAGTTACCAATGGTGATACTGTCAAA 1087
Query 889 GGTCATGGTAGCGGATTGGTTAGGACTCAGTCAGAGGAATCTCGACCGCAGTCATTACAACAGCCAGCCACATC 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088 GGTCATGGTAGCGGATTGGTTAGGACTCAGTCAGAGGAATCTCGACCGCAGTCATTACAACAGCCAGCCACATC 1161
Query 963 CACTACAGAAACTCCGGCTTCTCCAGCTCACACAACTCCACAGACCCAAAGTACAAGTGGTCGTCGGAGAAGAG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 CACTACAGAAACTCCGGCTTCTCCAGCTCACACAACTCCACAGACCCAAAGTACAAGTGGTCGTCGGAGAAGAG 1235
Query 1037 CAGCTAACGAAGATCCTGATGAAAAAAGGAGAAAGTTTTTAGAGCGAAATAGAGCAGCAGCTTCAAGATGCCGA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 CAGCTAACGAAGATCCTGATGAAAAAAGGAGAAAGTTTTTAGAGCGAAATAGAGCAGCAGCTTCAAGATGCCGA 1309
Query 1111 CAAAAAAGGAAAGTCTGGGTTCAGTCTTTAGAGAAGAAAGCTGAAGACTTGAGTTCATTAAATGGTCAGCTG-- 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 CAAAAAAGGAAAGTCTGGGTTCAGTCTTTAGAGAAGAAAGCTGAAGACTTGAGTTCATTAAATGGTCAGCTGCA 1383
Query 1183 ------------------------------------------------------------------------CA 1184
||
Sbjct 1384 GTGAATATATTGCTCGTGAAAGGTGCCAGATTGACAGCTTTGGAAACTGAAGGACTCTAATTATCCACAGACCA 1457
Query 1185 GAGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 GAGTGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTG 1531
Query 1259 TAACCGCCATGCAGAAGAAATCTGGCTATCATACTGCTGATAAAGATGATAGTTCAGAAGACATTTCAGTGCCG 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TAACCGCCATGCAGAAGAAATCTGGCTATCATACTGCTGATAAAGATGATAGTTCAGAAGACATTTCAGTGCCG 1605
Query 1333 AGTAGTCCACATACAGAAGCTATACAGCATAGTTCGGTCAGCACATCCAATGGAGTCAGTTCAACCTCCAAGGC 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 AGTAGTCCACATACAGAAGCTATACAGCATAGTTCGGTCAGCACATCCAATGGAGTCAGTTCAACCTCCAAGGC 1679
Query 1407 AGAAGCTGTAGCCACTTCAGTCCTCACCCAGATGGCGGACCAGAGTACAGAGCCTGCTCTTTCACAGATCGTTA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 AGAAGCTGTAGCCACTTCAGTCCTCACCCAGATGGCGGACCAGAGTACAGAGCCTGCTCTTTCACAGATCGTTA 1753
Query 1481 TGGCTCCTTCCTCCCAGTCACAGCCCTCAGGAAGT--------------------------------------- 1515
|||||||||||||||||||||||||||||||||||
Sbjct 1754 TGGCTCCTTCCTCCCAGTCACAGCCCTCAGGAAGTTGATTAAAAACCTGCAGTACAACAGTTTTAGATACTCAT 1827
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1828 TAGTGACTTCAAAGGGAAATCAAGGAAAGACCAGTTTCCATTTATGCGAAATCTGTGGTTGTAAATTTTTTTTT 1901
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1902 TTTACTTGAAATTAAATTTGGCTCTAAAGTTGGTGTAGCAGCAGTTGATCAGACTGAAAAACGGTTTTTAGTCT 1975
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 1976 CTGGAAAAAGACTGATTTTGCTTTTTTTATAAATATTATTAGATTTATTAATTTTTCTGTGCTCAATGTGTAAA 2049
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2050 TTGTATTATAATTCATTGTGATTTATTTCACTTTTAATTTGCTGGTGTTTTAATAAATGGGGGTGTTACTGAAT 2123
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2124 CTTTCTTCCCACTTCCATTTCTTTTGACCACCCCTTAACCCTCAACTGTGACGGTAGTAGTATTATCATTTATA 2197
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2198 CCAAAGTTTTGCATAGTCCCTGTTGACTTTGTAATGTTAACGGAGTCATAAAAGCACTAGGCAAGAGAAAGATA 2271
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2272 GAAATTTGCTTTTAATCTTTTTGCCTTTTATTTTGCACATTATGCAAAAGGAAAAACATTAAAGAACACTTTTT 2345
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2346 TTTAAGTGAGTGAAAACATGGTAAAGACATACAGTGCTTTTATGCACATTGTTAAGCTAAATCAAGGTCATTTA 2419
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2420 TAATCATTTTCCTTTTTTATTTAAGATTTTAAGTAAACAAATTTTAGAATTTTCAGCATTTCAAAAATGATTTT 2493
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2494 ATTTTTCAAGTCTTAAATTCAATATTTTACACCTATGTTTTGAGGCTAAAAATATGAAATTATATAATGTATGA 2567
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2568 TACAGGGTTATCAAATATCTAATAATTTTTGAAATTAGCTCTTGTTTTTGGTTTTTTTGTTGTTGTTTTTACAG 2641
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2642 ATTTCAGGTTACAAACTGCAAAGTTTATGCATAATTAAGTATGGTATGGTTGCCAGAAAAGCCTAAAATTACTA 2715
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2716 CTTAGAAAATTTAAGACTGTTTACCCCCATTGTCTTGTACTTGCGAGCTAACTTGTACTATTCTTGTGAAAGCA 2789
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2790 CTGTCATCTTTTAGTAGCAAATTTTGATAATGTTTCTCGTGGAAAAAAAAATCAGTATCTATCTTTAGAACAAT 2863
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2864 GTAATTATAATGTGGGAAGTGTGCATGAATGAGAGAGAGTGTGTGTGTATCTGTGTGTGTGTGCGCGTGTGTGT 2937
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 2938 GTGTCTTTTAATAGTTTATGCCAGCAATCTTTGCTTGAATGTTTAACGATGCCTTCAGTGTGATGCTGGCCAAT 3011
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3012 AGATGATTGCAGTTTAAAATGTCATTATTGTGCAGGCTTGGATAACTAACATTCCATGATGTAGCTTGTTTCTG 3085
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3086 ATGAGATGATTGTAGGTACATTTTTCTCATTATCCAATCATCTGTGGGATACTTAGTTTTCTAATGTGCCATTA 3159
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3160 TCTATTTTTATTCTGCAGTTATGTTCAAAATACAGTACATATTTTAAAATAGAATAAATTGTTAAACATAAAAT 3233
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3234 TTTAAAAGTAGTAGATGTGCGTAAGAAAACTTTGTAAAATAGTTATGAGTCCTACCCAGTAGCAACTTCTGGCA 3307
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3308 TTCAAGCAGGATTCCACTATGTAAATATCTGTAATGCATTTATAATAAGTTGTGTAGTTTGTCCTGCATCCATA 3381
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3382 CTACACTATTTGCTAAAGTCTCAGTGCCATCTCCTAATGAGACTGACATTTTAAAAGTCTGTATGGAATATCCT 3455
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3456 TGATAATTCAAGGAAATATCCCTCCTGCCTAAGTTCCAAACTGGGAAACATTCAAATTATATAAATGACATTTC 3529
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3530 AGGACTTTAAGTATGAAGATAATGGGAATTTTATTGTTTTGCTTTTTAAAATGAGAGCATTTTTATTTGATAAT 3603
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3604 TTTTTTTAAATTTTTAATTTTTAACTAATTTCATTATTTTAAAGTAATCAGTTTTTCAAATCATGATTTTGATA 3677
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3678 TCATTATTCTAAGGAGTTATCTCAAAGGCACAAAATATGAATTCTGCAAGAAGGCTATTTTTTATTGTAGTTTG 3751
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3752 AATGGGTTAGGAAAAGCCTCAATTTTTCACTCTTAAGTCCTTCAGTACATTTTTCTTTCATCTTATTACTTATG 3825
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3826 CAAGTTAAGGTTCTTTGGTAACAGAATTCTTGCAACTGTAAAATAAAACTACATAGATGTAAGAAGTCATGTAA 3899
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3900 ACGGTTAACAAGCTTACCAAGGTTAGCAAAACTTTCATTGTAAATCAGTCTGTACTGAGCAAATAAAAATCATT 3973
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 3974 ATTAGTTGTATAAACACAAATTCCATTTTGACTTTCAGGATGTCATACTACTTCTGTACCTAGCATTTTCAGTC 4047
Query 1516 -------------------------------------------------------------------------- 1515
Sbjct 4048 CTTATATTTGCAATGTTACACAAACTGTACTATTTTCTTTTATGTGCAGTTTGCATGAGTAAACCATCAGAGAA 4121
Query 1516 -------------------- 1515
Sbjct 4122 TAAATTCTATCTTTAAATTA 4141
