Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00464
Subject:
XM_011246838.1
Aligned Length:
2217
Identities:
1028
Gaps:
1104

Alignment

Query    1  ATGATTGAAGATAGTGGGAAAAGAGGAAATACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCA  74
            |||||||||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGATTGAAGATAGTGGAAAAAGAGGAAACACCATGGCAGAAAGAAGACAGCTGTTTGCAGAGATGAGGGCTCA  74

Query   75  AGATCTGGATCGCATCCGACTCTCCACCTACAGAACAGCATGCAAGCTTAGGTTTGTTCAGAAGAAATGCAATT  148
            ||||||||||||||||||||||||||||||||||||||||||||||||.||.|||||.||||||||||||||||
Sbjct   75  AGATCTGGATCGCATCCGACTCTCCACCTACAGAACAGCATGCAAGCTGAGATTTGTGCAGAAGAAATGCAATT  148

Query  149  TGCACCTGGTGGACATATGGAATGTCATAGAAGCATTGCGGGAAAATGCTCTGAACAACCTGGACCCAAACACT  222
            ||||||||||||||||.|||||.|||||.|||||||||||.|||||.|||.||||.||||||||||||||||..
Sbjct  149  TGCACCTGGTGGACATTTGGAACGTCATTGAAGCATTGCGCGAAAACGCTTTGAATAACCTGGACCCAAACATA  222

Query  223  GAACTCAACGTGTCCCGCTTAGAGGCTGTGCTCTCCACTATTTTTTACCAGCTCAACAAACGGATGCCAACCAC  296
            ||||||||||||.|||||.|.|||||.||||||||||||||||||||||||||||||||..|||||||||||||
Sbjct  223  GAACTCAACGTGGCCCGCCTGGAGGCGGTGCTCTCCACTATTTTTTACCAGCTCAACAAGAGGATGCCAACCAC  296

Query  297  TCACCAAATCCATGTGGAGCAGTCCATCAGCCTCCTCCTTAACTTCCTGCTTGCAGCGTTTGATCCGGAAGGCC  370
            ||||||||||||.|||||||||||||||||.|||||.||.|||||||||||.|||||.|||||.||||||||||
Sbjct  297  TCACCAAATCCACGTGGAGCAGTCCATCAGTCTCCTGCTGAACTTCCTGCTCGCAGCCTTTGACCCGGAAGGCC  370

Query  371  ATGGTAAAATTTCAGTATTTGCTGTCAAAATGGCTTTAGCCACATTGTGTGGAGGGAAGATCATGGACAAATTA  444
            ||||.|||||.||||||||||||||||||||||||||.||.||||||||||||||.||||||||||||||.|||
Sbjct  371  ATGGAAAAATCTCAGTATTTGCTGTCAAAATGGCTTTGGCTACATTGTGTGGAGGAAAGATCATGGACAAGTTA  444

Query  445  AGATATATTTTCTCAATGATTTCTGACTCCAGTGGGGTGATGGTTTATGGACGATATGACCAATTCCTTCGGGA  518
            ||||||||||||||||||||.||||||||||||||.||||||||.||||||.||||||||||||||||||||||
Sbjct  445  AGATATATTTTCTCAATGATCTCTGACTCCAGTGGAGTGATGGTATATGGAAGATATGACCAATTCCTTCGGGA  518

Query  519  AGTTCTCAAACTACCCACGGCAGTTTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTT  592
            ||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGTTCTCAAACTACCCACAGCAGTTTTTGAAGGTCCTTCATTTGGTTACACAGAACAGTCAGCCAGATCCTGTT  592

Query  593  TCTCCCAACAGAAAAAAGTCACGTTAAATGGTTTCTTGGACACGCTTATGTCAGATCCTCCCCCGCAGTGTCTG  666
            ||||||||||||||||.|||||.||||||||.||||||||||||||.||||||||.|||||.||.|||||.|||
Sbjct  593  TCTCCCAACAGAAAAAGGTCACCTTAAATGGCTTCTTGGACACGCTCATGTCAGACCCTCCTCCACAGTGCCTG  666

Query  667  GTCTGGTTGCCTCTTCTGCATCGACTAGCAAATGTGGAAAATGTCTTCCATCCGGTTGAGTGTTCCTACTGCCA  740
            ||.|||.|||||||||||||.|||||.||||||||.|||||||||||||||||.|||||||||||||||||.||
Sbjct  667  GTATGGCTGCCTCTTCTGCACCGACTGGCAAATGTAGAAAATGTCTTCCATCCAGTTGAGTGTTCCTACTGTCA  740

Query  741  CAGTGAGAGTATGATGGGATTTCGCTACCGATGCCAACAGTGTCACAATTACCAGCTCTGTCAGGACTGCTTCT  814
            |||||||||.||||||||||||||.||||||||.||||||||||||||.||||||||.||.|||||||||||||
Sbjct  741  CAGTGAGAGCATGATGGGATTTCGATACCGATGTCAACAGTGTCACAACTACCAGCTTTGCCAGGACTGCTTCT  814

Query  815  GGAGGGGACATGCCGGTGGTTCTCATAGCAACCAGCACCAAATGAAAGAGTACACGTCATGGAAATCACCTGCT  888
            |||||||.|||||.||.|||||||||||||||||||||||||||||.|||||.|||||.|||||||||||||||
Sbjct  815  GGAGGGGCCATGCAGGAGGTTCTCATAGCAACCAGCACCAAATGAAGGAGTATACGTCGTGGAAATCACCTGCT  888

Query  889  AAGAAGCTGACTAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCCAGCCGTGAACCTTTGCACCCCATGTTCCC  962
            ||||||||.||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct  889  AAGAAGCTAACGAATGCATTAAGCAAGTCCCTGAGCTGTGCTTCAAGCCGTGAACCTTTGCACCCCATGTTCCC  962

Query  963  AGATCAGCCTGAGAAGCCACTCAACTTGGCTCACATCGTGCCTCCCAGACCTGTAACCAGCATGAACGACACCC  1036
            |||.||||||||.||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.|
Sbjct  963  AGACCAGCCTGAAAAGCCACTCAACTTGGCTCACATCGTGCCTCCGAGACCTGTAACCAGCATGAACGACACAC  1036

Query 1037  TGTTCTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTTATTACCAGGAGCTC---------GGACGGTGCTTT-  1100
            |.||.||||||||||||||||||||||||||||||||.||.|||||||||||         ||||.|||...| 
Sbjct 1037  TCTTTTCCCACTCTGTTCCCTCCTCAGGAAGTCCTTTCATCACCAGGAGCTCTCCTCCCAAGGACAGTGAAGTA  1110

Query 1101  -------------TGGTGGATGCGTC------------------------------------------------  1113
                         ||.|||.|..|.|                                                
Sbjct 1111  GAACAGAACAAAATGCTGGCTAGGGCTGCTCCCGCCTTTCTGAAGGGCAGAGGGATACAGTACAGCCTGAATGT  1184

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1185  GGCAGACAGGCTAGCTGATGAACATGTTCTCATTGGGTTGTATGTCAACATGCTCCGGAACAACCCACCATGTA  1258

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1259  TGCTTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAA  1332

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1333  TCCTCCTCATCACAGCCCACACAGCAGAGGAGTGCCCCTGACATCTCCTTCACCATCGATGCAAATAAACAGCA  1406

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1407  AAGGCAGCTGATTGCAGAGCTAGAGAACAAGAACAGAGAAATCTTACAAGAGATTCAGAGACTTCGGGTAGAAC  1480

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1481  ATGAGCAAGCTTCCCAGCCCACGCCAGAGAAAGCTCAGCAGAACCCAACCTTGCTGGCAGAACTCCGGCTCCTC  1554

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1555  AGACAGCGAAAGGATGAGCTAGAACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTGATGGTCCAGTT  1628

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1629  GGAAGGTCTCATGAAGCTCCTGAAGACCCAGGGGGCAAGCTCCCCACGCTCTTCCCCCAGCCACACCATCAGCA  1702

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1703  GGCCGATCCCCATGCCCATCCGTTCAGCATCTGCCTGTCCCACACCAACGCACACCCCGCAGGACTCCCTCACT  1776

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1777  GGGGTAGGCGGAGATGTGCAAGAGGCGTTTGCACAAAGTTCGAGAAGGAATCTAAGGAGTGACCTGCTGGTGGC  1850

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1851  TGCAGACTCCATCACCAATACCATGTCCTCTCTGGTGAAGGAGCTGAATTCAGAGGTGGCGAGTGAAACAGAAA  1924

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1925  GTACTGTGGATTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGCTCCATCACCGACCTCTGAGAAGGCTTTT  1998

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 1999  CTAGCCCAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATGGT  2072

Query 1114  --------------------------------------------------------------------------  1113
                                                                                      
Sbjct 2073  CCCGGAAGATGGGGATCCTTACACGCAACCCGAGGATGGCAATTATGAGAACGAGTCTGTGCGGCAGCTGGAGA  2146

Query 1114  -----------------------------------------------------------------------  1113
                                                                                   
Sbjct 2147  ATGAGCTGCAGCTGGAGGAGTACCTGAAGCAGAAGCTGCAGGACGAGGCCTACCAGGTCAGCTTGCAAGGT  2217

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