Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00471
- Subject:
- NR_027677.1
- Aligned Length:
- 2524
- Identities:
- 707
- Gaps:
- 1693
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCGGAAAGATGGCCGGCCAGGGAACCTGAGCGCCTCCGCGGTCACCCTGGTCCCCTCCGAGCCTACCCTGAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCCTCTGCGCCTGGGCTCATCGCTGCGCGAGTGGGACCGCGGCGCTTCGTGGGTGGAGCCGCAGTGCTCCGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGTGGAGCGGGCGGCGCTGAAGGGGCCGGGAACGCGCGCGCCGAGCCTCCGGGGAAGGCGGGAGGGCGCGTGGG 222
Query 1 ---------------------ATGAGTCAGCAGCGGCCGGCGAGGA---AGTTACCCAGTCTCCTCCTGGACCC 50
|||||||||||||||.|||||.||| || |||||.||.||..|||||||
Sbjct 223 GCGCGAGGGGCGCGGGACAGCATGAGTCAGCAGCGGACGGCGCGGAGACAG---CCCAGCCTGCTGGTGGACCC 293
Query 51 GACGGAGGAGACGGTTCGCCGTCGGTGCCGAGACCCCATCAACGTGGA-------------------------- 98
|.||.||||.|||||.|||||.||.|||||||||||||||||||||||
Sbjct 294 GGCGCAGGAAACGGTGCGCCGGCGTTGCCGAGACCCCATCAACGTGGAAAACCTACTGCTTCTAGCCAGGTGTG 367
Query 99 -GGGCC-----------TGC----------------------------TGCCATCAAAAATAAGGATTAATTTA 132
.|||| ||| |||||||||||||||||||||||.||
Sbjct 368 GTGGCCCAGTTCTGTAATGCCAGTCCTTGGGAGGCAGAGACAGAAGGATGCCATCAAAAATAAGGATTAATCTA 441
Query 133 GAAGATAATGTACAATATGTGTCCATGAGAAAAGCTCTAAAAGTGAAGAGACCTCGTTTTGATGTATCGCTGGT 206
|||||.||||||||.|||||||||||||||||||||||.|||||||||||.||.||.||||||||.||.|||||
Sbjct 442 GAAGAAAATGTACAGTATGTGTCCATGAGAAAAGCTCTGAAAGTGAAGAGGCCCCGGTTTGATGTGTCACTGGT 515
Query 207 TTATTTAACTCGAAAATTTATGGATCTTGTCAGATCTGCTCCCGGGGGTATTCTTGACTTAAACAAGGTTGCAA 280
.||.||||||||.||.|||||||||||.|||||||||||.||.|||||.|||||||||||||||||.|||||.|
Sbjct 516 ATACTTAACTCGGAAGTTTATGGATCTCGTCAGATCTGCCCCTGGGGGCATTCTTGACTTAAACAAAGTTGCCA 589
Query 281 CGAAACTGGGAGTCCGAAAGCGGAGAGTGTATGACATCACCAATGTCTTAGATGGAATCGACCTCGTTGAAAAG 354
|.||||||||.||.||.|||.||.|||||||||||||||||||||||||.|||||.|||||.||.||.||||||
Sbjct 590 CAAAACTGGGTGTTCGGAAGAGGCGAGTGTATGACATCACCAATGTCTTGGATGGCATCGAACTGGTGGAAAAG 663
Query 355 AAATCCAAGAACCATATTAGATGGATAGGATCTGATCTTAGCAATTTTGGAGCAGTTCCCCAACAAAAGAAGCT 428
|||||.||||||||.|||.|.||||||||||||||.||.|.|||.|||||.||.|..|||||.||.||||||||
Sbjct 664 AAATCTAAGAACCACATTCGGTGGATAGGATCTGACCTGAACAACTTTGGGGCCGCACCCCAGCAGAAGAAGCT 737
Query 429 ACAGGAGGAACTTTCTGACTTATCAGCAATGGAAGATGCTTTGGATGAGTTAATTAAGGATTGTGCTCAGCAGC 502
.||||..|||||.||.|||.|.||.||.||||||||.||.|||||.|||||.|||||.||||||||||||||.|
Sbjct 738 GCAGGCAGAACTCTCCGACCTGTCGGCCATGGAAGACGCCTTGGACGAGTTGATTAAAGATTGTGCTCAGCAAC 811
Query 503 TGTTTGAGTTAACAGATGACAAAGAAAATGAAAGACTAGCATATGTGACCTATCAAGACATTCATAGCATTCAG 576
||||.|||||||||||||||||.|||||||||||||||||.|||||.||||||||.||.|||||..|||||||.
Sbjct 812 TGTTGGAGTTAACAGATGACAAGGAAAATGAAAGACTAGCGTATGTAACCTATCAGGATATTCACGGCATTCAA 885
Query 577 GCCTTCCATGAACAGATCGTCATTGCAGTTAAAGCTCCAGCAGAAACCAGATTGGATGTTCCAGCTCCCAGAGA 650
||.||||||||||||||.|||||||||||.||.|||||||..|||||||||.||||||||||||||||||||||
Sbjct 886 GCTTTCCATGAACAGATTGTCATTGCAGTGAAGGCTCCAGAGGAAACCAGACTGGATGTTCCAGCTCCCAGAGA 959
Query 651 AGACTCTATCACAGTGCACATAAGGAGCACCAACGGACCTATCGATGTCTATTTGTGTGAAGTGGAGCAGGGTC 724
|||.|||||||||||.||.||.|||||||||||.|||||.||.|||||.||||||||||||||.||.|||
Sbjct 960 AGATTCTATCACAGTACATATTAGGAGCACCAAAGGACCCATTGATGTATATTTGTGTGAAGTAGAACAG---- 1029
Query 725 AGACCAGTAACAAAAGGT-------CTGAAGGTGTCGGGACCTCTTCATCTGAGAGCACTCATCCAGAAGGCCC 791
.||||.| ||||.||| .|||.||..|.||..|||||.|||||.|.||||..||||||.||.||||
Sbjct 1030 -AACCATT--CAAATGGTAAAACCAATGATGGAATAGGAGCCTCTCCATCTAAAAGCAGCCATCCACAATGCCC 1100
Query 792 TGAGGAAGAAGAAAA---TCCTCAGCAAAGTGAAGAATT--GCTTGA------AGTAAGCA----------AC- 843
.|||.|||||||..| ||||||| ..|||||||||.| |..||| ||| |||| ||
Sbjct 1101 AGAGAAAGAAGACGAGCCTCCTCAG-TGAGTGAAGAACTCAGAGTGAGCGGCTAGT-AGCAGTGCAGAGTGACG 1172
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1173 AAGGTTTTTGGAGTATCCCGAGTGGGTGAATCATGTGCCCCATCCAGTGTGGGTGAATCATGTGCCCATCGTTT 1246
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1247 GATTTTCAGCAATAAGTCTCCTCGGAGTGCTCTTGTGCTCTATTGTAGACTGGTAGCCGCACCGAAGGCCAGTA 1320
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1321 GTGTTCTCCCGAGTCGCCTCCAGCACGGGGTCCTGATGGGTTCCCCATCCAGAATCAGCTCTCGAGATAACTCT 1394
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1395 TCGCTGCCCTTGGTCAGTGAAATAGACCTCTTGCCTCCTGAAATCATGTTATCACAAAGACTAGCATAAGGACA 1468
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1469 GACAGCTGGACAGCTGGTCGTGGACTGTGCCCTGCCCTGATGGATAGTGTTTGCCTCACAGAAGAATTGCCTTA 1542
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1543 CACTGGTTCACATTTGCAGTTAGGTGTTGTGCACTGGTGAGGTGCACACACGGGGCCAAATGTGGCGCCTTTGT 1616
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1617 ATATATCTGTATCATGTTTAGAGGACTTTCAAAATATGTCTGAGTGTCACTTATACCCTAGAACACCCAAAATA 1690
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1691 ATGTATGTAGGGAAAATGACAGACAGATCTCTAGTTTCTCAGTTCCTATAACTTATTAGAACCCTCTGGATGGG 1764
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1765 GATGAGAGAGTTTTCTAAAGTTTTACATGTAGAAGTTTCACAGATGCCTGGACATTTAGGTTCATATACTTAAA 1838
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1839 GTATTTTAATACGCTCCCCAGTGCTACAATTGGAACCACAAACTTCTTGATTTTTAAGCTGCCTACAGAGTCAT 1912
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1913 CATGTCCCAGAAGATTGGTGGCATGCCTCAAAGCATTGTGGGAAAGTACAGACTTTCATCTGGCAACAGATCAG 1986
Query 844 -------------------------------------------------------------------------- 843
Sbjct 1987 TTCACTACAATGTGATTTGGTCCTGGTGAAGTTAAAAGCATTATTCCGCTTTTTGTGAGCAGATTTTATAATGT 2060
Query 844 -------------------------------------------------------------------------- 843
Sbjct 2061 GTTTCTGTGTGCAGCCTTGCTCTTCAGTCAGAGGGCCTTACCTCCTGTGCATTGTACCCCGCCTCAGCTCTCAG 2134
Query 844 -------------------------------------------------------------------------- 843
Sbjct 2135 CCCGCCTTCCCAATCACCTAGCGCTCTCTACCTCAGTGGGTAAGTCACTTACCTCTCTGTGCCTCAATTGCCTC 2208
Query 844 -------------------------------------------------------------------------- 843
Sbjct 2209 AGTCATTTACCACTAGACTGTGAGCTCCGTGAGAGACAATTGTTCATAGTGGCTCCCAGCGCCTTGTACCACGC 2282
Query 844 -------------------------------------------------------------------------- 843
Sbjct 2283 CTAGTCCAAGACAAGTGCCCAGTGAATGTCTAGCAAACTCGTGAGTGAACGAGTGCAATGTGGGGCTGATGGAA 2356
Query 844 -------------------------------------------------------------------------- 843
Sbjct 2357 CCTGGATTGTTGGTATACAGGAGTCTGGGAAGCATCGTTAGTTTGGTAAACCTCTCCTGCTTTACAAAAGATTT 2430
Query 844 -------------------------------------------------------------------------- 843
Sbjct 2431 GAAGCAGCTTGAAATAACAATCATGTATACAAAGTAGAGATTCAAAATTAAAGTATTAAAAAAATAAAAAAAAA 2504
Query 844 -------- 843
Sbjct 2505 AAAAAAAA 2512
