Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00566
- Subject:
- NR_135491.2
- Aligned Length:
- 5574
- Identities:
- 385
- Gaps:
- 5150
Alignment
Query 1 -----------------------------------------ATGTCGTTCAGA---TTTGGCCAACATCT--CA 28
||.||.|.|| | |||| ||||| ||
Sbjct 1 ACTCCTCCTCTTTCCTGGCAAGGTCACAAGAACAGTCATCTATTTCATCCA-AGTGTTTG-----CATCTAACA 68
Query 29 TCAA-----GCCCTCTGTAGTG---TTTCTCA--AAACAGAACTGTCCTTCGCTCTTGTGAATAGGAAACCTGT 92
||| ||..||.||..|| |||.||| ||||| ||||| |.|.||||..|.|.|.||...|||
Sbjct 69 -CAATCACTGCATTCAGTTTTGAGATTTGTCATCAAACA-AACTG-----CACCCTTGCCATTTGTAACTTTGT 135
Query 93 GGTAC--CAGGA------CATGTCCTTGTGTGCCCG--CTGCGGCC----AGTGGAGC--------GCTTCCAT 144
||.|| ||||| .||.||.|..|||.||.| || |.|| |.|||||| .||.|.|.
Sbjct 136 GGCACCACAGGATATTCTAATCTCATCTTGTTCCTGTCCT--GTCCCATTAATGGAGCCAACCACTTCTCCAAG 207
Query 145 GA--CCTGCGTCCT-------------------GATGAAGTGG----------CC--GATTTG--TTTCAGACG 183
|| .|||..|||| || ||| ||| || |||.|| ..|||||||
Sbjct 208 GAGGTCTGGTTCCTTTTTTATTTTTATTTTTTGGA-GAA-TGGTATTTAGAAACCAAGATCTGGACATCAGACG 279
Query 184 ACCCAGAGAGTCGGGACAGTGGTGGAAAAACATTTCCATGGGACCTCTCTCACCTTTTCCATGCAGGATGGCCC 257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 ACCCAGAGAGTCGGGACAGTGGTGGAAAAACATTTCCATGGGACCTCTCTCACCTTTTCCATGCAGGATGGCCC 353
Query 258 CGAAGCCGGACAGACTGTGAAGCACGTTCACGTCCATGTTCTTCCCAGGAAGGCTGGAGACTTTCACAGGAATG 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 CGAAGCCGGACAGACTGTGAAGCACGTTCACGTCCATGTTCTTCCCAGGAAGGCTGGAGACTTTCACAGGAATG 427
Query 332 ACAGCATCTATGAG------------------------------------------------------------ 345
||||||||||||||
Sbjct 428 ACAGCATCTATGAGGAGGAGCTGGGATGCTCAGGTGAAATGTGGCCTCAGGCTCACCTGGGAATGAGCGAGTGA 501
Query 346 --------GAGCTCCAGAAACATGACAAGGAGGACTTTCCTGCCTCTTGGAGATCAGAGGAGGAAATGGCAGCA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 AGTTAGGAGAGCTCCAGAAACATGACAAGGAGGACTTTCCTGCCTCTTGGAGATCAGAGGAGGAAATGGCAGCA 575
Query 412 GAAGCCGCAGCTCTGCGGGTCTACTTTCAG-------------------------------------------- 441
||||||||||||||||||||||||||||||
Sbjct 576 GAAGCCGCAGCTCTGCGGGTCTACTTTCAGTGACACAGGTAAAGACTGCATTTCGTCATTACCCAGACCCTCCC 649
Query 442 -------------------------------------------------------------------------- 441
Sbjct 650 GTGGGCCTCAGGAAAGAGGCTGCACTCTCAGAATGGGGATGCACAAAAACACCTTCACCAGCATCCTTGGGTGG 723
Query 442 -------------------------------------------------------------------------- 441
Sbjct 724 TGGCTGCAAAGGACAAAGAGCTGGAGGGGAGAAAACCCTGGCCCTTGAGTACTGTATTCCCAGCCTCCCAGTCT 797
Query 442 -------------------------------------------------------------------------- 441
Sbjct 798 CTTCCAACTCTCCTGCCTCTTCACTCTCTTCTTCCAAGCCAGTGCCCCCAGCCCACCACCACCTTTCTCCAGTC 871
Query 442 -------------------------------------------------------------------------- 441
Sbjct 872 TTTCCTGCGGTGGTGCTCCTCCAGAATCCAATGTTCACAAAGCAGACCTTCTGTCATGCACAACTTCTTGTTTA 945
Query 442 -------------------------------------------------------------------------- 441
Sbjct 946 AAAGGTCAACCCCAACTTAACTTAAAGGTGTGACATGGCCCTTAGGCTCAAGTCTGTCTGCAAAGCCCTGTAAA 1019
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1020 CCAGCTTTCTCTGCCTCCCTAACACGCCCCCGGGCAAACTCCTCTGCTTTCACTGAGTGGACTCTTCTCTTCAG 1093
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1094 TTGCTATTTGGTAAATTGCCCTTCATGTTTCCCTTTATGTTCGGCTCCTAGGAAGCTCAGGCCACAGGGAAAAG 1167
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1168 TCAAGGCTTGATAGAATTAATCTTTGTCTTAATGATGACTAACTGTTGAGAGATCATAGGTTTAAGACTCTGGT 1241
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1242 AGAAAGATAGCTATAGCCAATTTCCTTGTCAAAATGCTTCTACTCCAAATTTTTATGCAGTGTCTAACGAGCTC 1315
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1316 ATGCCTAGATCTATCTGGCAATCTATATTATCCCTCCTAGTCTCAGTTCACATAGTAGACTGCTGGAATGACTG 1389
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1390 AGGGTGATGTTTGGCCTGTAAACAAAAAGTGTTAAAGAAGGCCAGGTACAGTGGCTCATGCCTATAATCCCAAC 1463
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1464 TACTTGGGAAGCTGAGGCAGGAGAACTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCAC 1537
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1538 TGCATTCCAGCCTGGGTGACAGAGCAAGACTCAGTTTCAAAAAAACAGGAGAGAGAGAGAGAGAAATGTATCTA 1611
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1612 TCTCTCTGAAATTTGTTTATAAATATAGGGTTACCATGCAATACTGGCATATATCTAGACTAAAAAAATTACTT 1685
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1686 GTTTATCTGAAATTCAAATTTAACTGGTATCTTGTATTTTTTTCTGGCAAACCTGTTAATAAACTCCCATGGAC 1759
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1760 CCCAGTTACAGATCCTCTCCTATAAATAGTTTCTTTTTTGTTTTTAGAATTAGATAATTCCAAATTAAAATTAG 1833
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1834 GCAATTCTTCATCTGACCTGTGAATAAATATGTTCATGTTATAAGTTGCAGAAGTAGATCAGACACAAATAAAA 1907
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1908 AACAAAATTAGTGAATAAATGCTGTTAGCAATTGATTGGAAAAAATTGTATCAACCACTTAGTGATCATGATTT 1981
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1982 TTAGCTAGAAAACACATTCATTGTATTCTGATTTCACCTTGAAATGTAAGTAAGTCTTTACTGGATAGCTTTAA 2055
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2056 ATATATGTGCACTTGGCCTTTCTCTCCCCAGCCCTCTTTTTAGAGTATTCTAAATAGTTAAAGACCCAGACTAC 2129
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2130 CTTGCCCCCTATTGTTGTTCAAATATGGTGTTGTACTCAGATCCTTGCATTCTAGAAAGCTTATTTCATTCTCC 2203
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2204 CATGTCATAAGTTTGTCAGCTCTGCACTCAGTTGCCTGGGGGGATATGGCAAGTGCTATAACAGAGGCTGTCTT 2277
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2278 TCATATTTTATTTTGAACCTTTTCCACTGTTCACCATCTCTCTCTCGTTTTTTAAGGATCAAGCTAGTTTAGTT 2351
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2352 TACCTAAGAACATAGGCCTATGGGCATGACTACAAACCTCTTTCTGTTCCTCTTATGAAGGCCAGTATGTCATT 2425
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2426 TTAGAGTGCCCTGTTCAAATTTAAATGGGGTGACAATACCTCAGACTTGACTGCCTAGGTTGAATTTTTTCTCC 2499
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2500 TGGGTTTTCTATGCAGTGGGTATTTTCAGGTAGAGGCTAGAAAGCTTTAGCCTTTTTCCCAAGGCTTGCTGAAT 2573
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2574 TGTAGGAGTTTTGTCTTAGAATGCTTTTTCTAGACACTTTAAGAACTTTAAGAAGATTCAAACTTATTACCCAA 2647
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2648 ATTTCCTGTAGGCTTTGTTTTGTCAGTTTTTGCTTCTGTCTTGCCTGGAGGCCTGACACCTCCTGTCTTCCAGG 2721
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2722 TAAATTGACTTCCCTTGTACATCTTACCAGAAAGATATTTACCCTAACTTGTTACACAAACTATTGCCACAGTA 2795
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2796 CCTGTGGATTTTTAAGTTAACTAACATGTGTATTTCTCTTTAAAGGTTTTGTGCACAGACCAAACAAATCACCC 2869
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2870 TCAGTCTTCCCAGCAGTCAGATGTGGTAACTAAGACTAGGACGGATAATATAGGTTGTGAGGTGGCAAACAACT 2943
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2944 TAGGGTCCTAAGATTTTGCCAAGACTGTCATCATTACCTGGAGTATAATGGGACTAACTATACCTCCCTTTAAG 3017
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3018 GACAATGGAAACATTCTATTGAAACCATCCTCACAGGGTTAACAAGAATTAGATGCTGGGTTCTGGACAGAAAT 3091
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3092 ATAGTTGTAATTAAGCATTAATCAGGCTGCACTTTGGCCCACTTCTTCGTAACCAAAAGTCCCAGAGCACCAGA 3165
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3166 TGCTAACCATTTGCCTCCTCATTGTTCCTACAGAGAAGATTTCTGATGTTAGAATCATAAGGCCTTTGTTTGTT 3239
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3240 TAAAAATGGCTTAAGATGTTTTTCAGATCCTGAATTCCAGCAAAAGAGCTATTGCCAACCAGTTTGAAGACCGC 3313
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3314 CCCCCGCCTCTCCCCAAGAGGAACTGAATCAGCATGAAAATGCAGTTTCTTCATCTCACCATCCTGTATTCTTC 3387
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3388 AACCAGTGATCCCCCACCTCGGTCACTCCAACTCCCTTAAAATACCTAGACCTAAACGGCTCAGACAGGCAGAT 3461
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3462 TTGAGGTTTCCCCCTGTCTCCTTATTCGGCAGCCTTATGATTAAACTTCCTTCTCTGCTGCAACCCTGTGTCTC 3535
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3536 GGTGTATTGACTTGCCATGAATTAGGCAACAAACCTATTACAGTTACAGTTACTTTTTTAAAGGAAATTCAATC 3609
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3610 GTTGGATTGGTCCACCTGCTTATTTCTTCCCTTTTCAAAAAAAATGTCTACATATTGAATTTTTATACATTAAG 3683
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3684 TGGTTCATGAAACCCCTGAAATGTGTTAGTAAATAGGGCAATTATGAAATATTTGGACATAGCTAGACTTTAAA 3757
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3758 AATTGTTAATCTGAAGGTCAGATAGACTTGGCCTTCTCCAGCTTTCGTGATTATTCCCTCAGCAGCAAGCTAGT 3831
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3832 CTTAGGCAGAGCAAGTTTAAAGACATTCATGGTGCTCACTCTGCAAAACTGCACAATTCTCAACATGCACAGAG 3905
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3906 GCAGACATGATAGGGCTCAGCCCTGGAATTGATAACACTAGCCAACACACTTGCTAAGAATTTATAAGATGTAG 3979
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3980 ACCCTGTTATTATCCTGTCTTGCAAGTGATGAGAAAACTAAGGCTTAAGGATGTTAAGTATTATTAGTTCAAGG 4053
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4054 CCAACGGTAAGTGGCAAAGCTCAGATTTGAATCCAGGCAGTCCCACCCTAAAGGCCATTCTCTTAGTCTGTGTA 4127
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4128 CTGCCCTCCTTGCTAAAAGAGCTCACCTCTCTAGCCACTTCCTTCTCCCTGTCCCATCTCCCCTTGTACCCTCC 4201
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4202 AAATAGTCTTCTTAGCCTCTTCACCTTATCTACTGGCCTATTTCTGCCTTGAGGACCTCCCACCTCCTCGCCTG 4275
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4276 CTGGACTTCTTCCTTACCTGCCTTGTTAATACAACCCTGCCCAGCACCTGCCTCCCTGGTCACACTACAGCCAG 4349
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4350 GTAGCAGAAACCAAAATGGGCCTGGATTTCCCCAACCAACTTGGTTCTACTTGCAAGATTCTCAGATCATGCTG 4423
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4424 AATCCTGCCTAGGCTACCCTCCCACTTTCTTTTCTTTACCATCTGACCACATGCCTAAATAAACATCACTTGGG 4497
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4498 CGAATACAGTGTTCCCCAAATTGCATTCATTCCCATTTTGTCATGATTTTTCTTATCTTTGTGGACCACCTAGA 4571
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4572 GCATTATTTACTTGATTCACTTTTTGAATTTTAGTATATATATCTTAAACTTTATATTTCAGCCTCAAAGAAAA 4645
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4646 ACAAGTACTACCTGTAATTAGAAGTTAAGCATAAAAATAAACATAAGAGAAAAACAATGCTGATGATTTCCAGC 4719
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4720 TCTGCATAGTTGCTTGCCTTAGCAACTAGGAGTGAGATTCAGTCTCTGTGTTAAAAAGTGAGGCTAGCCACCAT 4793
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4794 TAGAGGGGCATTTAATTCTAGCACCAAACCGAAACTCTCCATTTGGCATATTCAGAAGGATTAAAGAGAATAAC 4867
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4868 CTACTGAGAGATTCAATGTAGATCACTTAAGATTATCTTAAACAGGAATATGACTGACTCCCAACTTTGGAGAA 4941
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4942 ACAGCAGTGGAGGCCAGATCTTAAACCCAGAGCAAGCTGGCTTTAGACTTGCTTCAACCCTAAACCAGTACTCC 5015
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5016 TTTCCACCCACCCACCTCCCCCCAACCCCTGCAGGCATATCAAGAAGACAAGGTGCATGGGGGAAAACCAAAGA 5089
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5090 GTCAGCTTCCCTAGGGCTGATGGGTCAAATCTCAGTGCTTGCCTCTGACATTTTGCTTGCCGACAGTCTGTCTT 5163
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5164 GAAAACCAACAGGTTGCAAAGAAGAATGTGAACACCTATATCCAGAGATGCCCTATATAAGAATAAAGACTATA 5237
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5238 AGACCAAAAAGATGTTCTTGACTTAATGTTTGGGGTGGACATACCTAGTTATACGATTTGGCTGTTTCCCCACC 5311
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5312 CACATCTCATCTTGAATTGTAGCTCCCATAATCCCCACATGTCATGGGAGGGACCCAGTGGGAGGTAACTGAAT 5385
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5386 CAAGGGGGAGGGTCTTTCCCATGCTGTTCTCATGATTGATAGTGATGGTTTTATAAAGGACATTTCCCCTGAAT 5459
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5460 ACGCTGTCTTGCCTGCTGCCATGTAAGATGTGGCTTTGCTCCTCTTTTGCCTTCCTCCATGATTGCGAGTCCAT 5533
Query 442 ------------------------ 441
Sbjct 5534 TAAACCTCATTCCTTTATAAATTA 5557
