Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00765
Subject:
NR_002883.1
Aligned Length:
1734
Identities:
883
Gaps:
775

Alignment

Query    1  ------------------------------------------------------------ATGTCTAAGTCAG-  13
                                                                        |||||||||| || 
Sbjct    1  CTTTCTGCTCTTTGACGCTGCCGAGGAAGCATCGCTGAAGGCTCTTGTAACTCTACCGTCATGTCTAAGT-AGT  73

Query   14  ---AGTCTCCTAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTGAAACAACTGATGAG  84
               ||||||..||.|||||.|||||||||.|||||||||||||.||||||.|||||||.||||||||.||.|||
Sbjct   74  CCAAGTCTCTCAAGGAGCCAGAACAGCTGCGGAAGCTCTTCATCGGAGGGCTGAGCTTCGAAACAACCGACGAG  147

Query   85  AGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACGGACTGTGTGGTAATGAGAGATCCAAACACCAAGCG  158
            ||.|||||||||||||||||||||||||||||.||.||..||||||||||||||||||||||||||||||||.|
Sbjct  148  AGTCTGAGGAGCCATTTTGAGCAATGGGGAACACTAACCAACTGTGTGGTAATGAGAGATCCAAACACCAAGAG  221

Query  159  CTCCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCAGCTATGAATGCAAGGCCACACA  232
            .||||||||||||||||||||||||||||||||||||||.||.||||||||.||.|||||||||||.|||||||
Sbjct  222  ATCCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAAGAAGTGGATGCTGCCATGAATGCAAGACCACACA  295

Query  233  AGGTGGATGGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCCAGAGAAGATTCTCAAAGACCAGGTGCCCACTTA  306
            |||||||||||||||||||||||||.||||||.|||||||.||||||||||||||..|||||||||||||||||
Sbjct  296  AGGTGGATGGAAGAGTTGTGGAACCTAAGAGAACTGTCTCAAGAGAAGATTCTCAGCGACCAGGTGCCCACTTA  369

Query  307  ACTGTGAAAAAGATATTTGTTGGTGGCATTAAAGAAGACACTGAAGAACATCACCTAAGAGATTATTTTGAACA  380
            ||||||||||||||.|||||||||||.||||||||||||||||||||||||||||||.|||||||||||||.||
Sbjct  370  ACTGTGAAAAAGATCTTTGTTGGTGGTATTAAAGAAGACACTGAAGAACATCACCTACGAGATTATTTTGAGCA  443

Query  381  GTATGGAAAAATTGAAGTGATTGAAATCATGACTGACCGAGGCAGTGGCAAGAAAAGGGGCTTTGCCTTTGTAA  454
            ||||||.||.|||||||||||.|||||.|||||||||.||||||||||.||.||.|||||||||||.|||||.|
Sbjct  444  GTATGGGAAGATTGAAGTGATAGAAATTATGACTGACAGAGGCAGTGGGAAAAAGAGGGGCTTTGCTTTTGTTA  517

Query  455  CCTTTGACGACCATGACTCCGTGGATAAGATTGTCATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAA  528
            |||||||.|||||||||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct  518  CCTTTGATGACCATGACTCTGTGGATAAGATTGTTATTCAGAAATACCATACTGTGAATGGCCACAACTGTGAA  591

Query  529  GTTAGAAAAGCCCTGTCAAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAAAGAGGTCGAAGTGGTTCTGGAAA  602
            ||.|||||.||.||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||
Sbjct  592  GTAAGAAAGGCTCTGTCAAAGCAAGAGATGGCTAGTGCTTCATCCAGCCAGAGAGGTCGCAGTGGTTCTGGAAA  665

Query  603  CTTTGGTGGTGGTCGTGGAGGTGGTTTCGGTGGGAATGACAACTTCGGTCGTGGAGGAAACTTCAGTGGTCGTG  676
            |||||||||||||||||||||..||||.|||||.||||||||.||..||||.|||||.||||||||||||||||
Sbjct  666  CTTTGGTGGTGGTCGTGGAGGCAGTTTTGGTGGCAATGACAATTTTTGTCGAGGAGGGAACTTCAGTGGTCGTG  739

Query  677  GTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGAT  750
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct  740  GTGGCTTTGGTGGCAGCCGTGGTGGTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGCAATGAT  813

Query  751  GGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGGAATTACAACAATCAGTCTTCAAATTTTGGACC  824
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.||||||||.||
Sbjct  814  GGAAGCAATTTTGGAGGTGGTGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCCAATTTTGGGCC  887

Query  825  CATGAAGGGAGGAAATTTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGTGGAGGCCAATACTTTGCAAAACCAC  898
            .||||||.|||.|||.|||||||||||.|||||||||||.|||||.|||||||||||.||||||||.|||||||
Sbjct  888  GATGAAGCGAGAAAACTTTGGAGGCAGGAGCTCTGGCCCTTATGGTGGTGGAGGCCAGTACTTTGCTAAACCAC  961

Query  899  GAAACCAAGGTGGCTATGGCGGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGATTT------------  960
            |.||||||||||||||||||.||||||||||||||||||||||||||||||||||.||.||.            
Sbjct  962  GGAACCAAGGTGGCTATGGCAGTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGGAGGTTCTAGTTACATACA  1035

Query  961  --------------------------------------------------------------------------  960
                                                                                      
Sbjct 1036  GCCAGGAAACAAAGCTTAGCAGGAGAGGAGAGCCAGAGAAGTGACAGGGAAGCTACAGGTTACAACAGATTTGT  1109

Query  961  --------------------------------------------------------------------------  960
                                                                                      
Sbjct 1110  GAACTCAGCCAAGCACAGTGGTGGCAGGACCTACCTGCTACAAAGAAGACATGTTTTAGACAATACTCATGTGT  1183

Query  961  --------------------------------------------------------------------------  960
                                                                                      
Sbjct 1184  GTGGGCAAAAACTCTAGGACTGTATTTATGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAG  1257

Query  961  --------------------------------------------------------------------------  960
                                                                                      
Sbjct 1258  TGTAAAGCATTCCAACAAAAGGTTTTACTGTAGACCTTTTTCACCCATGCTGTTGATTGCTAAATGTAATAGTC  1331

Query  961  --------------------------------------------------------------------------  960
                                                                                      
Sbjct 1332  TGATCATGACGCTGAATAAATGTGTCTTTTTTTTTTTAATGTGCTGTGTAAAGTTAGTCTATTCTGAAGCCATC  1405

Query  961  --------------------------------------------------------------------------  960
                                                                                      
Sbjct 1406  TTGGTAAACTTCCCCAACAGTGTGAAGTTAGAATTCCTTCAGGGTGGTGCCAAGTTCCATTTGGAATTTATTTA  1479

Query  961  --------------------------------------------------------------------------  960
                                                                                      
Sbjct 1480  TGGTTGCTTGGGTGGAGAAGCCATTGTCTTCAAAAACCTTGACGTTGTTAAACTGCCAGTTACTATTGTAACTT  1553

Query  961  --------------------------------------------------------------------------  960
                                                                                      
Sbjct 1554  TTAATGAGTTTCACCATTGAAAGGGTCATCCAAGCAAGGTCACAATTTGGTTATAAAATGGTTGTTGGCACACC  1627

Query  961  --------------------------------------------------------------------------  960
                                                                                      
Sbjct 1628  CTATGCAATATCAAAATTGAATAACGGTATCAGATAAAATAACAGATGGGAATGAAGCTTATGTATCCATTATC  1701

Query  961  --------------------------------  960
                                            
Sbjct 1702  ATGTGTACTCAATAAACGATTTAATTCTCTTG  1733

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