Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00875
- Subject:
- XR_945735.1
- Aligned Length:
- 5684
- Identities:
- 1146
- Gaps:
- 4476
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGACTTGCCCTCAGCCTGAGTCGGCGGCGGCTGCGGGAACTTTCCCAGCGGATCTAATGGCTGCGCGCGGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTGTGAGGCGCGGCGGCGAGCGACGGGCGCGGGGCCGCGGAGCAGCGAGCGAGCGAGCGAGCGCGAGGCCGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCCCGGCCAGGCCCGGCCGACCCGCCGAGCCCGCGATGCGCCCCGGGGCCGCCCCCCGGCGCAGCTGACGCCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCGGCCCCGCGAAGACCCCGGCCGGCCGGTCCCGGAGGAAGCGGCCGCCGCCGCCGCCGCCCAGCCCAGCGCC 296
Query 1 -----------------ATGGCGGGGAAGGCGGCCGCCCCGGGCACCGCGGTGCTGCTGGTCACGGCCAACGTG 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGCGCCGCCCGGGCACCATGGCGGGGAAGGCGGCCGCCCCGGGCACCGCGGTGCTGCTGGTCACGGCCAACGTG 370
Query 58 GGCTCGCTCTTCGACGACCCAGAAAACCTGCAGAAGAACTGGCTTCGGGAATTTTACCAGGTCGTGCACACACA 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCTCGCTCTTCGACGACCCAGAAAACCTGCAGAAGAACTGGCTTCGGGAATTTTACCAGGTCGTGCACACACA 444
Query 132 CAAGCCGCACTTCATGGCCTTGCACTGTCAGGAGTTTGGAGGGAAGAACTACGAGGCCTCCATGTCCCACGTGG 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CAAGCCGCACTTCATGGCCTTGCACTGTCAGGAGTTTGGAGGGAAGAACTACGAGGCCTCCATGTCCCACGTGG 518
Query 206 ACAAGTTCGTCAAAGAACTATTGTCGAGTGATGCGATGAAAGAATATAACAGGGCTCGAGTCTACCTGGATGAA 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACAAGTTCGTCAAAGAACTATTGTCGAGTGATGCGATGAAAGAATATAACAGGGCTCGAGTCTACCTGGATGAA 592
Query 280 AACTACAAATCCCAGGAGCACTTCACGGCACTAGGAAGCTTTTATTTTCTTCATGAGTCCTTAAAAAACATCTA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACTACAAATCCCAGGAGCACTTCACGGCACTAGGAAGCTTTTATTTTCTTCATGAGTCCTTAAAAAACATCTA 666
Query 354 CCAGTTTGACTTTAAAGCTAAGAAGTATAGAAAGGTCGCTGGCAAAGAGATCTACTCGGATACCTTAGAGAGCA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCAGTTTGACTTTAAAGCTAAGAAGTATAGAAAGGTCGCTGGCAAAGAGATCTACTCGGATACCTTAGAGAGCA 740
Query 428 CGCCCATGCTGGAGAAGGAGAAGTTTCCGCAGGACTACTTCCCCGAGTGCAAATGGTCAAGAAAAGGCTTCATC 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CGCCCATGCTGGAGAAGGAGAAGTTTCCGCAGGACTACTTCCCCGAGTGCAAATGGTCAAGAAAAGGCTTCATC 814
Query 502 CGGACGAGGTGGTGCATTGCAGACTGTGCCTTTGACTTGGTGAATATCCATCTTTTCCATGATGCTTCCAATCT 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CGGACGAGGTGGTGCATTGCAGACTGTGCCTTTGACTTGGTGAATATCCATCTTTTCCATGATGCTTCCAATCT 888
Query 576 GGTCGCCTGGGAAACAAGCCCTTCCGTGTACTCGGGAATCCGGCACAAGGCACTGGGCTACGTGCTGGACAGAA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GGTCGCCTGGGAAACAAGCCCTTCCGTGTACTCGGGAATCCGGCACAAGGCACTGGGCTACGTGCTGGACAGAA 962
Query 650 TCATTGATCAGCGATTCGAGAAGGTTTCCTACTTTGTATTTGGTGATTTCAACTTCCGGCTGGATTCCAAGTCC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCATTGATCAGCGATTCGAGAAGGTTTCCTACTTTGTATTTGGTGATTTCAACTTCCGGCTGGATTCCAAGTCC 1036
Query 724 GTCGTGGAGACGCTCTGCACAAAAGCCACCATGCAGACGGTCCGGGCCGCCGACACCAATGAAGTGGTGAAGCT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTCGTGGAGACGCTCTGCACAAAAGCCACCATGCAGACGGTCCGGGCCGCCGACACCAATGAAGTGGTGAAGCT 1110
Query 798 CATATTTCGTGAGTCGGACAACGACCGGAAGGTTATGCTCCAGTTAGAAAAGAAACTCTTCGACTACTTCAACC 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CATATTTCGTGAGTCGGACAACGACCGGAAGGTTATGCTCCAGTTAGAAAAGAAACTCTTCGACTACTTCAACC 1184
Query 872 AGGAGGTTTTCCGAGACAACAACGGCACCGCG---------CTCTTGGAGTTTGACAA-------------GGA 923
|||||||||||||||||||||||||||||||| |.|.|||.|| || |||
Sbjct 1185 AGGAGGTTTTCCGAGACAACAACGGCACCGCGGTGGGAAGACCCGTGGGGT-----AAAGACCGCGTGTTTGGA 1253
Query 924 GTTGTCTGTCTTTAAGGACAG------------------ACTGT-------------ATGA------------- 953
| |||||| |.|||| ||.|| ||||
Sbjct 1254 G-TGTCTG-------GCACAGTGCCGACGTGGGAGCAGCACGGTGAGCCCGTGTCCAATGAGGATGGAGGCAGG 1319
Query 954 ------ACTGGACATCTCGTTC---------CCT------------------CCCAGCTACCCGTACAGTGAG- 993
.|.|||||.|||..|| ||| |.|||.|| |.|||||||.|
Sbjct 1320 CCCAGGCCAGGACACCTCTGTCAGGAGACAGCCTCACGAGTATGTTCAGATGCGCAGGTA--CTTACAGTGTGT 1391
Query 994 GACGCC----------------CGCC-------AGGGTGAGCAGTACATGAACACCCGGTGCC----------C 1034
.||||| .||| .||||..|||| .|.||.|..|.||| ||| |
Sbjct 1392 TACGCCACCTGCGGTGGTCGGTGGCCTGCTGTGCGGGTCTGCAG-CCCTGGAGCCACGG-GCCTCCCACTGTAC 1463
Query 1035 AG-CCTGGTGTG------AC-CGCATCCTCATGTCCC----CG---TCTGCC-AAGGAGCTGGTGCTGCGGTCG 1092
|| ||.||.||| || |||....|.||||||| || || ||| ||| |||||||.||..|
Sbjct 1464 AGCCCAGGCGTGGAGCGTACACGCGCTGTGATGTCCCACAGCGAAATC-GCCTAAG-----GGTGCTGAGGAAG 1531
Query 1093 G------AGAGC-GAGGAGAAG-------------GTTGTCACCT------ATGACCAC--------------- 1125
| ||||| |..||.||| .|||||.||| |.||.|||
Sbjct 1532 GACCCCCAGAGCTGCTGAAAAGCCTTAGACCGTCCTTTGTCTCCTCTCATGAGGAGCACAAGGCTGGGAGCTGC 1605
Query 1126 ---------ATTGGGCCCAACGT--------------CTGCATGGGA------------GACCACAAGCCCGTG 1164
||..||||| |||| ||| ||||| |.||....|||| ||
Sbjct 1606 CATCTGTGGATGTGGCCC-ACGTGGGGTCTCCTGTGGCTG--TGGGACTCTCCCACGGTGTCCGGCGGCCC-TG 1675
Query 1165 T-TCCTGGCCTTC--------------CGAATCATGCCCGGG-----------------------GCAGG---- 1196
| |||||..|.|| .||.|||..||||.| ||.||
Sbjct 1676 TCTCCTGAGCGTCGGGTTTCGTCAGTTGGATTCAGACCCGCGTTCCTCCTGAAAAGGATCGGAAAGCTGGGTTT 1749
Query 1197 -TAA--------ACCTCA---TGCCCATG----TGCACA-----------------AGTG---TTG-----TGT 1229
||| .|.||| |.||| || ||||.| |||| ||| |||
Sbjct 1750 TTAATTTTTCTGCCATCACGTTTCCC-TGTCAATGCAAATCATTGGTTCAGCCAACAGTGATATTGAACTCTGT 1822
Query 1230 ------------CG------TGCAG------------------------------------------------- 1236
|| |||||
Sbjct 1823 TTACATTTAGGGCGAGGAGTTGCAGAGACTTTTCTCCCCGAAGGCGGAGTTCTGATTTCCAGAGCACTGTGCAT 1896
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 1897 GGTATGCTTCTGACTGAGGCCCTGAGTGTGCAGCAGGTCAGCGTGGCCCAGGCCTCAGTGAGGCCATGCCCGTC 1970
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 1971 CACACGCTCAGAGCCCCCAGGGACCAACAGTGTCCTTAGGGGGACAGGAAGTCCCCAGGCCCCTCAGTGCCAGC 2044
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2045 TTGGATGCACCAGGGAAGACCCCCGGGGTAGTGAGGGGTCCTCAGAATCCTGATCTGGGCAAAGGTCTCTCCAC 2118
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2119 CCACGAGTGTACAGAGGAGGGTCGGGGATCTTATCCCCTGAGGCGCCTCATGCCAGACAGAAGCTGTGGCCACA 2192
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2193 CTCCGTGGCTTCTGCCTCAGGAACTTGCAAAGGGTGCACAGGCCTGGAATGGTTCAGAAACACCTCAGCCTGGG 2266
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2267 ATTTCCGGCTTCCAGAACCTGCACCAACAGGCGTTAGGGGCTGCCTGGGGCTTCGCTCGCTGCTGTGCTGTGGT 2340
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2341 AGCCGGAGGGGCCCAGCATCGGAAGTTCCAGTAGGTGGGGCTCCACGTCAGGGTGTGTCCCCAGGCACCCCCAT 2414
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2415 TCCTGCTAACATCGAAGCTCTCGGGAAGGGAGGTGGTGGGGGGCTCTCGGGGGTCCGGCTACAGTGAACAGTCT 2488
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2489 GTGTTCTATGGCCCGGCGCCCTCCTCACCCTGCAGGAGCCCCGGCCGTAAGCATCAGTGACCCCCTCACCCTGC 2562
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2563 AGGAGCCCCGGCCCCATGCCCACGCCAGCCCATGGAGGTAGCCCTGGCGTCCTCAGAGCCCCCCGGCCCTGTTC 2636
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2637 AGAGTCCCCTGGGCCTGTTCTCCCTCTTCTTGTTCACGTGCCCCTTGATGCGCAGTCCCGTGCTCACTGTGCCC 2710
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2711 GGTGCATTCACCAGGCTGGGGACACTCACTCAGGGCTGCGGCCTCACGACTTCGGTGCTCAGCCACGCAGCACC 2784
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2785 GTGCTCACAGACCCCACGCCGTGGACCCTGGCGGCCAGAGGCAGGGATGACCCACCCTGGGCGATAGCCACACC 2858
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2859 GTGCAGGAAGCCCGGTGCTCTGCTCTCTGAAGCTAAACGAATTCATGTCGGCCAAGAGCTCCAGCTACTCGTTC 2932
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2933 CCTCTGCTCACATGCCCAGCCTCTCTGCAGCACCTGCTGCTTCTAGGAGGTGGAGCAGCCCCAGCAGCCCCAGG 3006
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3007 CCCTCAAAGGCCTACGTGGTAAGGCACAGCCCGGGCCTGGCTGCAGCCCAGACAGGCACAGGGCCAGCACCGAG 3080
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3081 GACTGGGGGTGCTGAGGACTTGAGGGGTGCTGGTGGTTGCTGGAGGCAGAGCCAGGGTCGGACGCTGTGCCGCA 3154
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3155 CGCCTGCGAGGGGCGATGGTCCTTCTGGGCTCCAGAGCTCCCTGAGTGCTCCATGAGAGCTGTGGGCCCGCTGT 3228
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3229 GAGCAGAGCCCTCATTGCAAGAGGCCATCTGTGCCCCTGCACTTTGGTGCTGTCCAGGACTGCGTCCCCCACAG 3302
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3303 CTGTGAAAGCTCTGGGGTCACTGCAGAAGGTTGGAGGAATGCTGATCCGGGACAACTTCATTAAGGACGTGGCA 3376
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3377 TCGGAGGGCCCCACACAGCAGAGCTGTCATTCTGGCTCACCTGAGCGGGAGCTTTGCTGAGGACTCTCCTTTCC 3450
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3451 TCTGTGCCCATCTCTGGTACGGGGTGACTGTGGCGCAGCGTGTGCTTCCTCATGACGCCCGGGCCCCTCTCTCC 3524
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3525 CATGGCCCAGGTCAAGGCAGGAGGACGCTCGGTTTCCCATCTGCACAGCTGGGCCTGTCCTTCCTGGGCGGTCC 3598
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3599 TTTGTCCACTGTCTTCCTGAGGGGAGTTTGAGGAGAAGCCCCAGGTCTAACTCTGTGGCAGACAGGCCCACCGC 3672
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3673 CCTGCATCTCGGGACACAGCAGGCAGTGTTTCCACTGTAAACGCGGGGAGAGGGACCCACTTTCAGAGAAAGAA 3746
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3747 TTTGGCATCTGGTGAGAGCATCTCGTTTCCAGGGGGAATTTCAGAAAGAGTTTGCATCCGCATAATATAAATAC 3820
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3821 ACACTTGGCAAAAGCAAAACACAAAGCCAGGCTCTTTGGATTCTTAGACTAAAAATGTGCTGGGACCGCCAGGC 3894
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3895 TTCGTGCCACGTCTGGTTCGACCTCGACTCCCTGGTGTGCTCTGCAGAGGTCATGGCGTCTTCGGGTGCCACAT 3968
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3969 GCCCGTCTCTGGGTGGCACGGGCCCCTGAGACTTCTATGAACTTGCATCTCCAGCTTTTCAAGTTTTACTGGAG 4042
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4043 TGTCATTGAGGCAGTAACTTGATGTGAGAAAGAAAGCAAATGCCTAGATTGTCTGGAGACCACACGCTGGGAAC 4116
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4117 AGGAAAGGCACTGCAGTGCACTGTGGGGGCATGTGTTCATTTGACAGCACTCTGGGTGCCTGCTCTGAGCCAGG 4190
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4191 CCCTGCTCTGGGTTAACAAGACAGACAGACACATCCCTGCCATGGAGCTCTGGGGGTGGCAGGGGACAGCATGG 4264
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4265 TGGGGAGGAGCCTGGGAATAGTGTGCTCAGCAGGTGAGCAGCACCTGTGGGGGAGGAGCCTGGGGGTGCCACGA 4338
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4339 GGAAGCTTGCTGAGGATGGCATGGCTGGTGGGGGACAGCACGGTGGGGCGGAGCCTGGGGGTGCCATGCGGAGG 4412
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4413 CTTGCTGAGAAGAGCCATAAACAGTCACCCTGGGTGACTCCAAGCTGTGGGAGGCCAGTGCGGTGCAGGGACCC 4486
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4487 AGTCGGTCACTTTGGAGGGCAGGTCCACATTCATTGTCACAACTAAAAAAATTCCCAAAAATCAAGACCCACCA 4560
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4561 AAGACGATCTTACAGTTGCAAACTGTGAACCACGTAAGGACACATTCCACAGATAGCAAGAGTCCAGAAATACA 4634
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4635 ACAAAGGCAGGACAGACCGTCAATAATGCCAAATCATCGAATAATTGATACAAATTATAATATTGTAAATTATT 4708
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4709 AAAAGCATGACAGAATTAGAAACATAAGTACCACACTATGAAAAAAATCCCAACAGATAAAAAAAAGTAGGACT 4782
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4783 CATAGAAGTATTATCATTAAAATTAAAAGCTCCAGGGATGAATTAAGTGCCGGAGTAGACACAGCTGGAGAAGG 4856
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4857 GATTGAGGAATGGGATGGCAGGCCTGGGGAATGGCCCAGAATGCAGCACAGAAACGTGGCAGGATGGGACAGGA 4930
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 4931 GGGTCGGGGCTGGGAGAGGAGGGAAGAGCCCAGCGCTTGCGCAGTGAGGGTCCACGAGGGGCACACTGGAGAGT 5004
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 5005 CAATGGCTGGGCGTTTTCCAGAATTATCCAAGACATAAACCTCAGGAAGCATGGTGAGTCCTGAGCAGGAGGAA 5078
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 5079 TGGAAGTAAATCCACACACAGACATGTCAGAGTGAAACAGCGGAACATCAAAGACGAAGAGAATATTTTTGAAG 5152
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 5153 CATTGTGGGAAAAATGTCCTATTACATAAGAATGCAAGTGGCGGCGGGTTTCCAGAACAACCACAAAAATACAC 5226
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 5227 ACCAGGAGAAGTGGAGGCGTTCAGTCAAAGAGCTGGTGGAAAACCCCACCCACACACTTAGAGTTCTCTCAGCA 5300
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 5301 GCCAAGTCAGCCTTCAGAACACTGGCCACCATAAAGACAGTACCTGGCGATGGAGAGACACAGCCCCACCAGCA 5374
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 5375 GGTCCCACAGAGAACCAGGAGTAGCTGAGCTTCTGGAGCAGGGTGGGATGAAGAAGGAAGAAGAACATTTGTGT 5448
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 5449 AAAGCTTAAAAACATGTAGGCTGAGGCGAGCTGCTTTTTGTGGACTCATGCATGGCGGTAATATAGAAACATAC 5522
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 5523 TTGGGGCTGGGCACGGTAGAACACTTGGGGAGGCCGAGGCAGGAGGATTGCTTGAGGCCAGTAGTCTCAGACAA 5596
Query 1237 ------------------------------------------------------------ 1236
Sbjct 5597 GCCAGGGCAATGTGGCAAGACCCCGTCTCTACAAAAAATAAAGACTTAGCAGGAGTGGTG 5656
