Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00923
Subject:
NR_110279.3
Aligned Length:
4875
Identities:
765
Gaps:
4108

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT  74

Query    1  -----------------------------------------------------ATGTCTCCCCACCCCACCGCC  21
                                                                 |||||||||||||||||||||
Sbjct   75  CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC  148

Query   22  CTCCTGGGCCTAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCCTCCATCTC  95
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTCCTGGGCCTAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCCTCCATCTC  222

Query   96  GGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGGGGTTCAAA  169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGGGGTTCAAA  296

Query  170  CATTCCGCCTGGAGAGGGAGAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTCCATCTGAG  243
            |||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTCCATCTGAG  370

Query  244  TCAGAGGCCAGATTCCGCATTGACTCAGTAAGTGAAGGAAATGCCGGGCCTTATCGCTGCATCTATTATAAGCC  317
            |||||||||||||||||||||||||||                                               
Sbjct  371  TCAGAGGCCAGATTCCGCATTGACTCA-----------------------------------------------  397

Query  318  CCCTAAATGGTCTGAGCAGAGTGACTACCTGGAGCTGCTGGTGAAAGAAACCTCTGGAGGCCCGGACTCCCCGG  391
                                                           |||.|||||||||||||||||||||||
Sbjct  398  -----------------------------------------------AAAGCTCTGGAGGCCCGGACTCCCCGG  424

Query  392  ACACAGAGCCCGGCTCCTCAGCTGGACCCACGCAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCT  465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  425  ACACAGAGCCCGGCTCCTCAGCTGGACCCACGCAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCT  498

Query  466  TCCCAAGGCCTGAAAGCTGAGCATCTGTATATTCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCT  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  499  TCCCAAGGCCTGAAAGCTGAGCATCTGTATATTCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCT  572

Query  540  CCTGGTCCTCTTCTGCCTCCATCGCCAGAATCAGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGA  613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  573  CCTGGTCCTCTTCTGCCTCCATCGCCAGAATCAGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGA  646

Query  614  AGCCACAGCAGAGGCCTGACCTGGCTGTTGATGTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTT  687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  647  AGCCACAGCAGAGGCCTGACCTGGCTGTTGATGTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTT  720

Query  688  CCTGAGAAGGACAGAGAGACGGACACCTCGGCCCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCT  761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  721  CCTGAGAAGGACAGAGAGACGGACACCTCGGCCCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCT  794

Query  762  GGACCACTGGGCCCTCACACAGAGGACAGCCCGGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCA  835
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  795  GGACCACTGGGCCCTCACACAGAGGACAGCCCGGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCA  868

Query  836  TCACGTATGCAGCCGTTGCCAGACAC------------------------------------------------  861
            ||||||||||||||||||||||||||                                                
Sbjct  869  TCACGTATGCAGCCGTTGCCAGACACTGACCCCATACCCACCTGGCCTCTGCACCTGAGGGTAGAAAGTCACTC  942

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct  943  TAGGAAAAGCCTGAAGCAGCCATTTGGAAGGCTTCCTGTTGGATTCCTCTTCATCTAGAAAGCCAGCCAGGCAG  1016

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1017  CTGTCCTGGAGACAAGAGCTGGAGACTGGAGGTTTCTAACCAGCATCCAGAAGGTTCGTTAGCCAGGTGGTCCC  1090

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1091  TTCTACAATCGAGCAGCTCCTTGGACAGACTGTTTCTCAGTTATTTCCAGAGACCCAGCTACAGTTCCCTGGCT  1164

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1165  GTTTCTAGAGACCCAGCTTTATTCACCTGACTGTTTCCAGAGACCCAGCTAAAGTCACCTGCCTGTTCTAAAGG  1238

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1239  CCCAGCTACAGCCAATCAGCCGATTTCCTGAGCAGTGATGCCACCTCCAAGCTTGTCCTAGGTGTCTGCTGTGA  1312

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1313  ACCTCCAGTGACCCCAGAGACTTTGCTGTAATTATCTGCCCTGCTGACCCTAAAGACCTTCCTAGAAGTCAAGA  1386

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1387  GCTAGCCTTGAGACTGTGCTATACACACACAGCTGAGAGCCAAGCCCAGTTCTCTGGGTTGTGCTTTACTCCAC  1460

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1461  GCATCAATAAATAATTTTGAAGGCCTCACATCTGGCAGCCCCAGGCCTGGTCCTGGGTGCATAGGTCTCTCGGA  1534

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1535  CCCACTCTCTGCCTTCACAGTTGTTCAAAGCTGAGTGAGGGAAACAGGACTTACGAAAACGTGTCAGCGTTTTC  1608

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1609  TTTTTAAAATTTAATTGATCAGGATTGTACGTATTCAAGGTGTAAAATGTGATAATTTGTCGTACACGTACATT  1682

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1683  GTGCAATGACAGTCACAATCAATTCCTCAGCGCACCCATCGCCACAGATACGATACATTAGATATTCTGAACTT  1756

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1757  GCTCATCTTAGGACTTCACATTGGTGTCAGTGTTTTCTGACAAATCACGTGTATCAGGAATGAATGAGGGAGGT  1830

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1831  GTGGCTGGGTGAAGGCAGAGAGCCGACCCTACAGGTCCACATCTGCACATACATGCACAGGAATGCATGCTCTC  1904

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1905  ACACACATGCATACACACACGCACACACACAGACATGCACATACACTCACACGCCCCAGGAAATCCAAGGAATC  1978

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1979  ACTGAGCCTGCTGTTGGTTGAGGCATTTCTGAGTATCCACCCTACCTGTAGGGTCAGATGTACTGATTGACACA  2052

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2053  GAAAATTACCCTATGTACCACTAGGAGGCGGCAGAATCTCATTTGGGTTAATCTGTGTTTGTCTTTAAAAAACA  2126

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2127  AAAACAGGCCGGGCATGGAGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGG  2200

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2201  TCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCCGGG  2274

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2275  TGTGGTGGTGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGGAGGAGAATGGCGTGAACCCGGGAGGCGG  2348

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2349  AGTTTGCAGTGAGCCGAGGTGGTGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAGAAA  2422

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2423  AGAAAAGAAAAGAAAGATTTTTAAGAATTCAGCAAAAACTCAGCCAGCTCTTTCTATGGGGCAGTTGCTAATTT  2496

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2497  AGTTCTAGGCAAACGTGGACACATTAAATTCTCCTACAAACCCTCCACAGCGTGCTCTATTATTTTCCTCATTT  2570

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2571  ATAAAAACAGAAACTATGGACCGAGACATGAAGTAACCTGTCCAAGGTCGGCCAAGTCTCAGAGACAGGGGCTT  2644

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2645  CAGACCCACCTGAGGCTCCTGACTCCACATTATGAACCCCGGGATGGGCTGCAGCTCGGTCTGCTGGGAGGTTT  2718

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2719  CTGTGCTGGTTCAAAGAGGGTGGTACCTGACTGGCCTACCCAATTTTAATTTGTACTGAGCTTTAATTTTCTAT  2792

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2793  TTGTGCTCAGGTTTAATTTCCTCCTGGGATCTGCTTCCCAGTGCTGTACTCTGTATCTTTGCTTTCTTGTGTGA  2866

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2867  ACATTGTGACCGATTTTCCCTGTTCTTCACGTGGGACACATTCTCCCTGCTCTGTCTGTCTCTGTCCCTGTCTC  2940

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2941  TCTTTCTGTCTTTCTCTCTCACTGTGTGTCTCTCTGTCTCTCTCTCTCTTTTTTTTTTTTTTTGAGATGGAGTT  3014

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3015  TCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAG  3088

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3089  CGATTCTCCTGCCTCAGCCTCCTGAGCAGCTGGGATTACAGGCATGCACCACCACACACGGCTAATTTTTTGTA  3162

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3163  TTTTTGTTAGAGACGGGGGGCTCTCCATGTTGCTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCTGCCCA  3236

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3237  CCTCAGCCTCCCAAAGTCCTGGGATTACAGGCATGAGCCACTGCGTCCAGCCGTCTTTGTCTCTTTTTCTACAT  3310

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3311  CTCTGTCTTTCTTCTCTGGTTGTTTTTCAACCATCAGCTGGGTGTTTTCTCCCATAACGTCTTGTTTGTTTGAC  3384

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3385  TATGAGGTTGACAGGTGGGTACATGAACTCTATAGCAGAAGGTGGACAGTCTGCACATAGCAGAGGATGGGTGA  3458

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3459  ATTTTTCTACCCCTTGCAGAGCACAGGAGAGCTGAGCAGATGCCAGTGTCTGCTCCAGTGTAAGGAAGTCCAGG  3532

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3533  AAGTTCAGGTGGTGAGGTCACAGTGGAAAGCAGGACAGATAGAGTTTAGGGGAAATTAAGCAAAAATACCACAC  3606

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3607  TGTTATTTCTTGACATATTAGTGGAAAGAGGAAGGGCCCAGAGAGAAGACAGAAAATTAGATGCAGGGGCTTGT  3680

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3681  TTTTTCTCTTGACTTGCCAACCCGCCCAACGCAGGGGCCAGAACTCAGGGTGGTGAGATCTGGGAACATTGCTG  3754

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3755  TGCGGAGAAGATGTCCCTCCTGCTGCACGGGCCCCCAAGCACCACCTGGGGGAAGAGCCATGTTTAATTCACCT  3828

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3829  GGCAGTGCAGTGTGGCCAGGCAGAGAGGGAGGGCCTACCCTGTGCTTATGATCCCACCCCAGTTCCCCTGGGGT  3902

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3903  GTGCCCTGGCGGTGAACACCAGGAGGCTGCAGTGGGGCCCAACGTGAAAGGGAGGAGCAGCCTCACCGGGGCCA  3976

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3977  GATGGGGCAGCAGCAGATATTCACAGATGTCCCTGTGAGTAACCAGGGCAGAGGCCAGGGGTCTGGCCTTCCCT  4050

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4051  TTCTTGGAGCCCTGGGCCAGCTGGGCAAGGCGTTGAGAGAAAGATTACCCGGTGACCTTTATCAAAGCAGAGTA  4124

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4125  AGGAGGGCTTTATTCAGAACCATCACTGTAGGTACCAGGACCCCAGCGGTGGGATTTTGTAGTAGGGGAAAGAA  4198

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4199  AATGGGCTCGACGTTGAATACAGCATGAACAAGTGAGAATGTTTGTTATACAAACTATAGGGTGGACTTTTTTT  4272

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4273  TTCTTTTTTTTAACTTTTTTTTACCTTTTAGTGTAAAACTGAACATAGAAAATAAATTCATGAAGAAGGGATAT  4346

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4347  TTTCTGAGGGTGTCCAGGGCTGCCCAACACCTCGTCTACCTTCTCTGTCATAGCCCCATTTAAAACACTCTCTC  4420

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4421  TGGATGAATACACCAAACCTCACAGTCTTTGCTCTCTTGCTAGGAAGAGGAGCAAGAGCGTGTTTCACTCTTGG  4494

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4495  CTCCTGCTTACACACCTGCTGTCCAATGGAAACTACTACTTAAGACATTTAAAAATAGTTGTGGTGATAGCATG  4568

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4569  TTGTGTTTTGGTTGGTGATGCCAGTTAGTCTCTGAAAACTTTCTGTGATGAGTGTAAAATTCTACACCTTAATC  4642

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4643  TCCTTTCTTGTAGGATCTGGGAAGCAGTATGCACTTGATTGCACCAAAGATTTTACGTTCATAGAAAATTTCTG  4716

Query  862  -----------------------------------------------------------------  861
                                                                             
Sbjct 4717  GCATCTGTGTGAAGAAAGTAAACTATATCTTCCATTTAGACAAATAAAATATCTTTTTGATAAAA  4781

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