Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00923
Subject:
NR_110280.3
Aligned Length:
5139
Identities:
813
Gaps:
4301

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTGCTGTGGAAGCCCCATAGGCAGGAGGCCCCCGGGCAGCACATCCTGTCTGCTTGTGTCTGCTGCAGAGTT  74

Query    1  -----------------------------------------------------ATGTCTCCCCACCCCACCGCC  21
                                                                 |||||||||||||||||||||
Sbjct   75  CTGTCCTTGCATTGGTGCGCCTCAGGCCAGGCTGCACTGCTGGGACCTGGGCCATGTCTCCCCACCCCACCGCC  148

Query   22  CTCCTGGGCCT---------------------------------------------------------------  32
            |||||||||||                                                               
Sbjct  149  CTCCTGGGCCTAGCAAGAAGGATTACATGGAGACAGTGATGTCGAGGAGGGTTGGCTTGGTCGTTATGAAATGC  222

Query   33  --------------------------------------------------------------------------  32
                                                                                      
Sbjct  223  TGAATGCCCCCCAGCTCCATCGAGCCCCCTTTTGACAGCAGCCCCGTAAGGAGACTGGGCACTGGGCATTTTTC  296

Query   33  -------------------AGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCC  87
                               |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCACTGGGGCTTCTCTTCCAGTGCTCTGCCTGGCCCAGACCATCCACACGCAGGAGGAAGATCTGCCCAGACCC  370

Query   88  TCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGG  161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TCCATCTCGGCTGAGCCAGGCACCGTGATCCCCCTGGGGAGCCATGTGACTTTCGTGTGCCGGGGCCCGGTTGG  444

Query  162  GGTTCAAACATTCCGCCTGGAGAGGGAGAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTC  235
            |||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGTTCAAACATTCCGCCTGGAGAGGGACAGTAGATCCACATACAATGATACTGAAGATGTGTCTCAAGCTAGTC  518

Query  236  CATCTGAGTCAGAGGCCAGATTCCGCATTGACTCAGTAAG---TGAAGGAAATGCCGGGCCTTATCG----CTG  302
            ||||||||||||||||||||||||||||||||||| .|||   ||.||     |||.||.||...||    |.|
Sbjct  519  CATCTGAGTCAGAGGCCAGATTCCGCATTGACTCA-AAAGCTCTGGAG-----GCCCGGACTCCCCGGACACAG  586

Query  303  CATCTATTATAAGCCC----CCT-AAATGGTCTG-AGCAG--------------AGTGACTAC--------CT-  347
                       |||||    ||| |..|||||.| |||||              .|.||.|||        || 
Sbjct  587  -----------AGCCCGGCTCCTCAGCTGGTCAGTAGCAGGGCCCTCAGCTGGAGGGGATTACAGGGGAATCTG  649

Query  348  ------GGA-GCTG---------------------CTGG---TGAAAGAAACCTCT--GGAGGCC---------  379
                  ||| ||||                     ||||   ||.|...||..|||  |||||||         
Sbjct  650  TGCTGCGGATGCTGTTCCGGGTCCAGCCCTCTGCCCTGGGCTTGGAGTCAAGGTCTAGGGAGGCCACGGGAAGG  723

Query  380  --CGGACTCCC----------CGGA-------------CACAGAGCCC---GGCTCCTCAGC--TGGACCCACG  423
              |.|||.|||          .|||             |||||||.||   |      ||||  ||||||||||
Sbjct  724  CACCGACACCCACCAAGCTCTGGGAGGTCGCTAATGCTCACAGAGACCATAG------CAGCAATGGACCCACG  791

Query  424  CAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGAGCATCTGTATAT  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  792  CAGAGGCCGTCGGACAACAGTCACAATGAGCATGCACCTGCTTCCCAAGGCCTGAAAGCTGAGCATCTGTATAT  865

Query  498  TCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCCATCGCCAGAATC  571
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  866  TCTCATCGGGGTCTCAGTGGTCTTCCTCTTCTGTCTCCTCCTCCTGGTCCTCTTCTGCCTCCATCGCCAGAATC  939

Query  572  AGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGACCTGGCTGTTGAT  645
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  940  AGATAAAGCAGGGGCCCCCCAGAAGCAAGGACGAGGAGCAGAAGCCACAGCAGAGGCCTGACCTGGCTGTTGAT  1013

Query  646  GTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGACGGACACCTCGGC  719
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014  GTTCTAGAGAGGACAGCAGACAAGGCCACAGTCAATGGACTTCCTGAGAAGGACAGAGAGACGGACACCTCGGC  1087

Query  720  CCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACACAGAGGACAGCCC  793
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1088  CCTGGCTGCAGGGAGTTCCCAGGAGGTGACGTATGCTCAGCTGGACCACTGGGCCCTCACACAGAGGACAGCCC  1161

Query  794  GGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCCAGACAC------  861
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct 1162  GGGCTGTGTCCCCACAGTCCACAAAGCCCATGGCCGAGTCCATCACGTATGCAGCCGTTGCCAGACACTGACCC  1235

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1236  CATACCCACCTGGCCTCTGCACCTGAGGGTAGAAAGTCACTCTAGGAAAAGCCTGAAGCAGCCATTTGGAAGGC  1309

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1310  TTCCTGTTGGATTCCTCTTCATCTAGAAAGCCAGCCAGGCAGCTGTCCTGGAGACAAGAGCTGGAGACTGGAGG  1383

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1384  TTTCTAACCAGCATCCAGAAGGTTCGTTAGCCAGGTGGTCCCTTCTACAATCGAGCAGCTCCTTGGACAGACTG  1457

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1458  TTTCTCAGTTATTTCCAGAGACCCAGCTACAGTTCCCTGGCTGTTTCTAGAGACCCAGCTTTATTCACCTGACT  1531

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1532  GTTTCCAGAGACCCAGCTAAAGTCACCTGCCTGTTCTAAAGGCCCAGCTACAGCCAATCAGCCGATTTCCTGAG  1605

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1606  CAGTGATGCCACCTCCAAGCTTGTCCTAGGTGTCTGCTGTGAACCTCCAGTGACCCCAGAGACTTTGCTGTAAT  1679

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1680  TATCTGCCCTGCTGACCCTAAAGACCTTCCTAGAAGTCAAGAGCTAGCCTTGAGACTGTGCTATACACACACAG  1753

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1754  CTGAGAGCCAAGCCCAGTTCTCTGGGTTGTGCTTTACTCCACGCATCAATAAATAATTTTGAAGGCCTCACATC  1827

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1828  TGGCAGCCCCAGGCCTGGTCCTGGGTGCATAGGTCTCTCGGACCCACTCTCTGCCTTCACAGTTGTTCAAAGCT  1901

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1902  GAGTGAGGGAAACAGGACTTACGAAAACGTGTCAGCGTTTTCTTTTTAAAATTTAATTGATCAGGATTGTACGT  1975

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 1976  ATTCAAGGTGTAAAATGTGATAATTTGTCGTACACGTACATTGTGCAATGACAGTCACAATCAATTCCTCAGCG  2049

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2050  CACCCATCGCCACAGATACGATACATTAGATATTCTGAACTTGCTCATCTTAGGACTTCACATTGGTGTCAGTG  2123

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2124  TTTTCTGACAAATCACGTGTATCAGGAATGAATGAGGGAGGTGTGGCTGGGTGAAGGCAGAGAGCCGACCCTAC  2197

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2198  AGGTCCACATCTGCACATACATGCACAGGAATGCATGCTCTCACACACATGCATACACACACGCACACACACAG  2271

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2272  ACATGCACATACACTCACACGCCCCAGGAAATCCAAGGAATCACTGAGCCTGCTGTTGGTTGAGGCATTTCTGA  2345

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2346  GTATCCACCCTACCTGTAGGGTCAGATGTACTGATTGACACAGAAAATTACCCTATGTACCACTAGGAGGCGGC  2419

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2420  AGAATCTCATTTGGGTTAATCTGTGTTTGTCTTTAAAAAACAAAAACAGGCCGGGCATGGAGGCTCACGCCTGT  2493

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2494  AATCCCAGCACTTTGGGAGGCTGAGGTGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGG  2567

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2568  TGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCCGGGTGTGGTGGTGGGTGCCTGTAGTCCCAGCTACT  2641

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2642  CGGGAGGCTGAGGGAGGAGAATGGCGTGAACCCGGGAGGCGGAGTTTGCAGTGAGCCGAGGTGGTGCCACTGCA  2715

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2716  CTCCAGCCTGGGCGACAGAGCGAGACTCCGTCAAAAAAGAAAAGAAAAGAAAAGAAAGATTTTTAAGAATTCAG  2789

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2790  CAAAAACTCAGCCAGCTCTTTCTATGGGGCAGTTGCTAATTTAGTTCTAGGCAAACGTGGACACATTAAATTCT  2863

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2864  CCTACAAACCCTCCACAGCGTGCTCTATTATTTTCCTCATTTATAAAAACAGAAACTATGGACCGAGACATGAA  2937

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 2938  GTAACCTGTCCAAGGTCGGCCAAGTCTCAGAGACAGGGGCTTCAGACCCACCTGAGGCTCCTGACTCCACATTA  3011

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3012  TGAACCCCGGGATGGGCTGCAGCTCGGTCTGCTGGGAGGTTTCTGTGCTGGTTCAAAGAGGGTGGTACCTGACT  3085

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3086  GGCCTACCCAATTTTAATTTGTACTGAGCTTTAATTTTCTATTTGTGCTCAGGTTTAATTTCCTCCTGGGATCT  3159

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3160  GCTTCCCAGTGCTGTACTCTGTATCTTTGCTTTCTTGTGTGAACATTGTGACCGATTTTCCCTGTTCTTCACGT  3233

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3234  GGGACACATTCTCCCTGCTCTGTCTGTCTCTGTCCCTGTCTCTCTTTCTGTCTTTCTCTCTCACTGTGTGTCTC  3307

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3308  TCTGTCTCTCTCTCTCTTTTTTTTTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGG  3381

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3382  CACAATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGCAGCTG  3455

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3456  GGATTACAGGCATGCACCACCACACACGGCTAATTTTTTGTATTTTTGTTAGAGACGGGGGGCTCTCCATGTTG  3529

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3530  CTCAGGCTGGTCTTGAACTCCCGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTCCTGGGATTACAGGC  3603

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3604  ATGAGCCACTGCGTCCAGCCGTCTTTGTCTCTTTTTCTACATCTCTGTCTTTCTTCTCTGGTTGTTTTTCAACC  3677

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3678  ATCAGCTGGGTGTTTTCTCCCATAACGTCTTGTTTGTTTGACTATGAGGTTGACAGGTGGGTACATGAACTCTA  3751

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3752  TAGCAGAAGGTGGACAGTCTGCACATAGCAGAGGATGGGTGAATTTTTCTACCCCTTGCAGAGCACAGGAGAGC  3825

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3826  TGAGCAGATGCCAGTGTCTGCTCCAGTGTAAGGAAGTCCAGGAAGTTCAGGTGGTGAGGTCACAGTGGAAAGCA  3899

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3900  GGACAGATAGAGTTTAGGGGAAATTAAGCAAAAATACCACACTGTTATTTCTTGACATATTAGTGGAAAGAGGA  3973

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 3974  AGGGCCCAGAGAGAAGACAGAAAATTAGATGCAGGGGCTTGTTTTTTCTCTTGACTTGCCAACCCGCCCAACGC  4047

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4048  AGGGGCCAGAACTCAGGGTGGTGAGATCTGGGAACATTGCTGTGCGGAGAAGATGTCCCTCCTGCTGCACGGGC  4121

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4122  CCCCAAGCACCACCTGGGGGAAGAGCCATGTTTAATTCACCTGGCAGTGCAGTGTGGCCAGGCAGAGAGGGAGG  4195

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4196  GCCTACCCTGTGCTTATGATCCCACCCCAGTTCCCCTGGGGTGTGCCCTGGCGGTGAACACCAGGAGGCTGCAG  4269

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4270  TGGGGCCCAACGTGAAAGGGAGGAGCAGCCTCACCGGGGCCAGATGGGGCAGCAGCAGATATTCACAGATGTCC  4343

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4344  CTGTGAGTAACCAGGGCAGAGGCCAGGGGTCTGGCCTTCCCTTTCTTGGAGCCCTGGGCCAGCTGGGCAAGGCG  4417

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4418  TTGAGAGAAAGATTACCCGGTGACCTTTATCAAAGCAGAGTAAGGAGGGCTTTATTCAGAACCATCACTGTAGG  4491

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4492  TACCAGGACCCCAGCGGTGGGATTTTGTAGTAGGGGAAAGAAAATGGGCTCGACGTTGAATACAGCATGAACAA  4565

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4566  GTGAGAATGTTTGTTATACAAACTATAGGGTGGACTTTTTTTTTCTTTTTTTTAACTTTTTTTTACCTTTTAGT  4639

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4640  GTAAAACTGAACATAGAAAATAAATTCATGAAGAAGGGATATTTTCTGAGGGTGTCCAGGGCTGCCCAACACCT  4713

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4714  CGTCTACCTTCTCTGTCATAGCCCCATTTAAAACACTCTCTCTGGATGAATACACCAAACCTCACAGTCTTTGC  4787

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4788  TCTCTTGCTAGGAAGAGGAGCAAGAGCGTGTTTCACTCTTGGCTCCTGCTTACACACCTGCTGTCCAATGGAAA  4861

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4862  CTACTACTTAAGACATTTAAAAATAGTTGTGGTGATAGCATGTTGTGTTTTGGTTGGTGATGCCAGTTAGTCTC  4935

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 4936  TGAAAACTTTCTGTGATGAGTGTAAAATTCTACACCTTAATCTCCTTTCTTGTAGGATCTGGGAAGCAGTATGC  5009

Query  862  --------------------------------------------------------------------------  861
                                                                                      
Sbjct 5010  ACTTGATTGCACCAAAGATTTTACGTTCATAGAAAATTTCTGGCATCTGTGTGAAGAAAGTAAACTATATCTTC  5083

Query  862  ---------------------------------  861
                                             
Sbjct 5084  CATTTAGACAAATAAAATATCTTTTTGATAAAA  5116

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